Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Reverse (-)

58922122 .. 58926460

Gene Structure 4339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG399600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAGCTGTTTTAGAAGAGACTTTCTCAAAACTCTTATTAGAGTTTCCAAGCAGACGAAAATGGCTTCCATCTCTCTCTCTCCAACAGTTGCAACAGGATACGTTCAAACGAAAACAAAAAGAAGCCCAAGTAGTAGTTCAGCTCCATGCCCATCCATGGCTTTCTCGATCCCGCCCATCAAATCATCACTTTTCCAACATGGCTTCTCTCTTCTACAATCATCTTATTCAAATGGGCGCTTCTTCAAATCCCGTCACTCTCACTCGGGTGTTTATGCAAGAGCAGCTACTGAGAAGACTCTCTATGATTTTACAGTCAAGGATATCGATGGAAAGGATGTCCCTCTTAGCAAGTTTAAGGGGAAGGTTCTTTTGGTTGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAACTGTCACATGTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCGGGATCAAATACAGAAATCAAGCAATTTGCTTGTACACGGTATAAAGCCGAATACCCCATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGTGGGAGGTTTCTTAGGTGACATTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTAGTGGAGAGGTATCCACCAACAACATCACCTTTTCAAATTGAGGTATATGCTTTTCCTTGGTTGGGTTTCTGCAATTCCTTCATAGGTGTGTTTCCTGAGATAGTCTCTTTCAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

274

Amino Acids

30.53

Weight (kDa)

9.43

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	100 - 160	9.6e-07	Redoxin
GSHPx	PF00255	101 - 209	1.4e-42	Glutathione peroxidase
AhpC-TSA	PF00578	101 - 164	4.2e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	2 cut(s)	163, 520
AcsI	RAATTY	1 cut(s)	667
AfaI	GTAC	2 cut(s)	449, 544
AfiI	CCNNNNNNNGG	3 cut(s)	157, 508, 767
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	6 cut(s)	107, 231, 247, 393, 414, 740
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 356, 388
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	5 cut(s)	6, 143, 287, 476, 605
AluI	AGCT	5 cut(s)	6, 143, 287, 476, 605
Alw26I	GTCTC	2 cut(s)	12, 814
AlwI	GGATC	2 cut(s)	163, 520
AlwNI	CAGNNNCTG	2 cut(s)	290, 622
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	667
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	499, 593
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	662, 723
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	4 cut(s)	77, 160, 185, 323
BciVI	GTATCC	2 cut(s)	92, 726
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	12, 814
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	241
BfuI	GTATCC	2 cut(s)	92, 726
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	499, 593
BmiI	GGNNCC	2 cut(s)	500, 595
BmrFI	CCNGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	3 cut(s)	9, 41, 794
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	156, 761
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 508, 767
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	156, 761
BseGI	GGATG	2 cut(s)	152, 343
BseLI	CCNNNNNNNGG	3 cut(s)	157, 508, 767
BseMII	CTCAG	3 cut(s)	282, 435, 792
BseXI	GCAGC	1 cut(s)	296
BseYI	CCCAGC	1 cut(s)	596
BshFI	GGCC	1 cut(s)	501
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	509, 608
BslFI	GGGAC	2 cut(s)	326, 579
BslI	CCNNNNNNNGG	3 cut(s)	157, 508, 767
BsmAI	GTCTC	2 cut(s)	12, 814
BsmFI	GGGAC	2 cut(s)	326, 579
BsnI	GGCC	1 cut(s)	501
BsoBI	CYCGRG	1 cut(s)	265
Bsp1407I	TGTACA	1 cut(s)	542
Bsp143I	GATC	2 cut(s)	168, 512
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	3 cut(s)	283, 434, 793
BspDI	ATCGAT	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	500, 595
BspPI	GGATC	2 cut(s)	163, 520
BsrGI	TGTACA	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	156, 761
BssMI	GATC	2 cut(s)	168, 512
BssT1I	CCWWGG	2 cut(s)	156, 761
Bst4CI	ACNGT	4 cut(s)	88, 316, 429, 549
Bst6I	CTCTTC	3 cut(s)	10, 216, 415
BstAUI	TGTACA	1 cut(s)	542
BstDEI	CTNAG	5 cut(s)	291, 347, 421, 646, 801
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	152, 343
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	171, 515
BstMAI	GTCTC	2 cut(s)	12, 814
BstMBI	GATC	2 cut(s)	168, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	327
BsuI	GTATCC	2 cut(s)	92, 726
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	152, 343
CaiI	CAGNNNCTG	2 cut(s)	290, 622
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	499, 593
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	448, 543
CviAII	CATG	4 cut(s)	147, 157, 200, 434
CviQI	GTAC	2 cut(s)	448, 543
DdeI	CTNAG	5 cut(s)	291, 347, 421, 646, 801
DpnI	GATC	2 cut(s)	170, 514
DpnII	GATC	2 cut(s)	168, 512
Eam1104I	CTCTTC	3 cut(s)	10, 216, 415
EarI	CTCTTC	3 cut(s)	10, 216, 415
Eco130I	CCWWGG	2 cut(s)	156, 761
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	156, 761
ErhI	CCWWGG	2 cut(s)	156, 761
FaeI	CATG	4 cut(s)	150, 160, 203, 437
FaqI	GGGAC	2 cut(s)	326, 579
FatI	CATG	4 cut(s)	146, 156, 199, 433
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	139, 350
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	2 cut(s)	509, 608
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	150, 160, 203, 437
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	298, 469
HpaII	CCGG	2 cut(s)	509, 608
HphI	GGTGA	2 cut(s)	662, 723
Hpy166II	GTNNAC	3 cut(s)	382, 545, 688
Hpy188I	TCNGA	2 cut(s)	424, 624
Hpy188III	TCNNGA	2 cut(s)	166, 800
Hpy8I	GTNNAC	3 cut(s)	382, 545, 688
HpyAV	CCTTC	2 cut(s)	358, 793
HpyCH4III	ACNGT	4 cut(s)	88, 316, 429, 549
HpyCH4IV	ACGT	2 cut(s)	102, 384
HpyCH4V	TGCA	4 cut(s)	92, 278, 486, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	5 cut(s)	291, 347, 421, 646, 801
HpySE526I	ACGT	2 cut(s)	102, 384
Hsp92II	CATG	4 cut(s)	150, 160, 203, 437
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	168, 512
LmnI	GCTCC	2 cut(s)	148, 610
LpnPI	CCDG	5 cut(s)	81, 522, 610, 621, 813
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	2 cut(s)	102, 384
MaeIII	GTNAC	3 cut(s)	254, 429, 650
MalI	GATC	2 cut(s)	170, 514
MboI	GATC	2 cut(s)	168, 512
MboII	GAAGA	5 cut(s)	27, 203, 235, 307, 402
MluCI	AATT	5 cut(s)	415, 533, 667, 741, 778
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	107, 220
MnlI	CCTC	5 cut(s)	354, 418, 632, 705, 739
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	3 cut(s)	267, 438, 791
MspI	CCGG	2 cut(s)	509, 608
MspR9I	CCNGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	168, 512
NlaIII	CATG	4 cut(s)	150, 160, 203, 437
NlaIV	GGNNCC	2 cut(s)	500, 595
NmuCI	GTSAC	3 cut(s)	254, 429, 650
NspI	RCATGY	1 cut(s)	437
OliI	CACNNNNGTG	1 cut(s)	267
PciI	ACATGT	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	469
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	433
Psp1406I	AACGTT	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	596
PspN4I	GGNNCC	2 cut(s)	500, 595
PspPI	GGNCC	2 cut(s)	499, 593
PstNI	CAGNNNCTG	2 cut(s)	290, 622
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	2 cut(s)	449, 544
RsaNI	GTAC	2 cut(s)	448, 543
RseI	CAYNNNNRTG	3 cut(s)	267, 438, 791
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	168, 512
Sau96I	GGNCC	2 cut(s)	499, 593
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	3 cut(s)	267, 438, 791
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	5 cut(s)	415, 533, 667, 741, 778
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	156, 761
TaaI	ACNGT	4 cut(s)	88, 316, 429, 549
TaiI	ACGT	2 cut(s)	105, 387
TaqI	TCGA	2 cut(s)	167, 327
TasI	AATT	5 cut(s)	415, 533, 667, 741, 778
TatI	WGTACW	2 cut(s)	447, 542
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	3 cut(s)	254, 429, 650
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	3 cut(s)	254, 429, 650
TspDTI	ATGAA	1 cut(s)	775
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	667
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.