Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Forward (+)

35096880 .. 35099343

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G395200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTTCCATGCCTTTCTCTGCAACTTTTTCAACCCCTCTACACGGTTATTCTCAAACAAAAACAACAAGAAGCTCAAATTCTTCAGCTTCATGCCCTTCCATGGCTTTCTGGGCCCCCTCCGTCAAATCTTCACTTGGGTCATCTAAATCAGCAATTTTCCAGAACGGGTTCTCTTTGCAATCACCGAGTTTTAATGGGGTTTTCTTCAAAGCTCGGTCTTTGGGTGTTTATGCAAGAGCAGCTACAGAGAAAACTCTTTATGATTTCAGTGTCAAGGATATTGACGGAAAGGATGTTCCTCTTAGCAAATTCAAGGGGAAGGTTCTTCTGATTGTGAACGTGGCTTCAAAATGTGGATTGACTTCTTCAAATTACTCAGAACTGTCACACTTGTATGAAAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAGCCTGGATCAAACCCGGAAATCAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTCCCCATTTTTGACAAGGTTGATGTCAACGGTCCCAGCACAGCTCCGGTTTACCAGTTTCTGAAATCAAGTGCAGGAGGTTTTCTAGGTGACCTTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTTGTTGAGAGATACCCACCAACAACATCACCTTTTCAAATTGAGAGGGATATCCAGAAACTGGTGGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

245

Amino Acids

26.74

Weight (kDa)

9.33

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	721
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	4 cut(s)	79, 311, 518, 625
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	407, 502
AfiI	CCNNNNNNNGG	3 cut(s)	44, 103, 721
AgsI	TTSAA	6 cut(s)	33, 211, 316, 351, 372, 698
AjnI	CCWGG	1 cut(s)	466
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	8 cut(s)	75, 89, 215, 245, 434, 515, 563, 731
AluI	AGCT	8 cut(s)	75, 89, 215, 245, 434, 515, 563, 731
AlwI	GGATC	1 cut(s)	478
AlwNI	CAGNNNCTG	2 cut(s)	580, 721
AoxI	GGCC	2 cut(s)	114, 457
ApaI	GGGCCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	242, 728
ApoI	RAATTY	4 cut(s)	79, 311, 518, 625
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	4 cut(s)	114, 115, 457, 551
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	177, 620, 681
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	479
BfaI	CTAG	2 cut(s)	431, 605
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	243, 729
BlsI	GCNGC	2 cut(s)	244, 730
Bme1390I	CCNGG	2 cut(s)	468, 479
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	4 cut(s)	114, 115, 457, 551
BmiI	GGNNCC	4 cut(s)	116, 117, 458, 553
BmrFI	CCNGG	2 cut(s)	468, 479
BpuEI	CTTGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 103, 721
Bse1I	ACTGG	2 cut(s)	574, 726
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	44, 103, 721
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	574, 726
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	2 cut(s)	116, 459
BsiSI	CCGG	2 cut(s)	479, 566
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	3 cut(s)	44, 103, 721
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	2 cut(s)	116, 459
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	470
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	2 cut(s)	116, 459
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	4 cut(s)	116, 117, 458, 553
BspPI	GGATC	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	574, 726
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	47, 387, 551
BstAUI	TGTACA	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	305, 379
BstDSI	CCRYGG	1 cut(s)	102
BstEII	GGTNACC	1 cut(s)	608
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	470
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 242
BstNI	CCWGG	1 cut(s)	468
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	466, 477
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	116, 459
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	277
CaiI	CAGNNNCTG	2 cut(s)	580, 721
Cfr13I	GGNCC	4 cut(s)	114, 115, 457, 551
Csp6I	GTAC	2 cut(s)	406, 501
CviAII	CATG	3 cut(s)	10, 93, 103
CviQI	GTAC	2 cut(s)	406, 501
DdeI	CTNAG	2 cut(s)	305, 379
DpnI	GATC	1 cut(s)	472
DpnII	GATC	1 cut(s)	470
DraI	TTTAAA	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	69
Eco91I	GGTNACC	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	13, 96, 106
FaiI	YATR	6 cut(s)	11, 94, 104, 234, 264, 399
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	3 cut(s)	9, 92, 102
Fnu4HI	GCNGC	2 cut(s)	243, 729
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	243, 729
FspBI	CTAG	2 cut(s)	431, 605
GluI	GCNGC	2 cut(s)	243, 729
GsaI	CCCAGC	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	116, 459
HapII	CCGG	2 cut(s)	479, 566
Hin1II	CATG	3 cut(s)	13, 96, 106
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	2 cut(s)	479, 566
HphI	GGTGA	3 cut(s)	177, 620, 681
Hpy166II	GTNNAC	4 cut(s)	340, 547, 571, 646
Hpy188I	TCNGA	3 cut(s)	333, 382, 582
Hpy188III	TCNNGA	2 cut(s)	163, 715
Hpy8I	GTNNAC	4 cut(s)	340, 547, 571, 646
HpyAV	CCTTC	2 cut(s)	108, 316
HpyCH4III	ACNGT	3 cut(s)	47, 387, 551
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	5 cut(s)	23, 181, 236, 444, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 242
HpyF3I	CTNAG	2 cut(s)	305, 379
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	13, 96, 106
Kzo9I	GATC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	431, 605
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	387, 608
MalI	GATC	1 cut(s)	472
MboI	GATC	1 cut(s)	470
MboII	GAAGA	5 cut(s)	75, 123, 199, 320, 360
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	7 cut(s)	79, 156, 311, 373, 518, 625, 699
MnlI	CCTC	5 cut(s)	48, 130, 312, 590, 699
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	2 cut(s)	195, 510
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	2 cut(s)	479, 566
MspR9I	CCNGG	2 cut(s)	468, 479
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	113, 242
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	470
NlaIII	CATG	3 cut(s)	13, 96, 106
NlaIV	GGNNCC	4 cut(s)	116, 117, 458, 553
NmuCI	GTSAC	2 cut(s)	387, 608
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	244, 730
Psp6I	CCWGG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	608
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	4 cut(s)	116, 117, 458, 553
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	114, 115, 457, 551
PstNI	CAGNNNCTG	2 cut(s)	580, 721
PsyI	GACNNNGTC	1 cut(s)	614
RsaI	GTAC	2 cut(s)	407, 502
RsaNI	GTAC	2 cut(s)	406, 501
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	195, 510
SatI	GCNGC	2 cut(s)	243, 729
Sau3AI	GATC	1 cut(s)	470
Sau96I	GGNCC	4 cut(s)	114, 115, 457, 551
ScrFI	CCNGG	2 cut(s)	468, 479
SduI	GDGCHC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	7 cut(s)	79, 156, 311, 373, 518, 625, 699
SspMI	CTAG	2 cut(s)	431, 605
StyD4I	CCNGG	2 cut(s)	466, 477
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	47, 387, 551
TaiI	ACGT	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	7 cut(s)	79, 156, 311, 373, 518, 625, 699
TatI	WGTACW	2 cut(s)	405, 500
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	2 cut(s)	195, 510
Tru9I	TTAA	2 cut(s)	195, 510
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	387, 608
TseI	GCWGC	2 cut(s)	242, 728
Tsp45I	GTSAC	2 cut(s)	387, 608
TspDTI	ATGAA	2 cut(s)	81, 414
TspGWI	ACGGA	2 cut(s)	112, 303
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	614
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	4 cut(s)	79, 311, 518, 625
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	431, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.