Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001434.1

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Forward (+)

6729 .. 8618

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001434.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggctttctcgatcccgcccatcaaatcctcactcggctcctctaaatcatcacttttccaacatggcttctctctacaatcatcttattcaaatgggcgcttcttcaaatcccgtcactcgggtgtttatgcaagagcagctactgagaagactctctatgattttacagtcaaggatatcgatggaaaggatgttcctcttagcaagtttaaggggaaggttcttttggttgtcaacgttgcttcaaaatgtggcttgacctcttcaaattactcagaactgtcacatgtgtatgagaagtacaaaactcaaggatttgagattctagctttcccttgcaatcagtttgggggccaagaaccgggatcaaatacggaaatcaagcaatttgcttgtacacggtataaagccgaataccccatttttgataaggttgatgtcaatggtcccagcacggctccggtttatcagtttctgaaatcaagtgcgggaggtttcttaggtgacattgtcaagtggaattttgagaagtttttggtggacaagaatggtaaagtagtggagaggtatccaccaacaacatcaccttttcaaattgagaaggatatccagaaactggttgcagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

9.27

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	619
AciI	CCGC	2 cut(s)	17, 491
AclI	AACGTT	1 cut(s)	240
AclWI	GGATC	2 cut(s)	7, 376
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	2 cut(s)	305, 400
AfiI	CCNNNNNNNGG	3 cut(s)	121, 364, 619
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	5 cut(s)	93, 109, 249, 270, 596
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AleI	CACNNNNGTG	1 cut(s)	123
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	3 cut(s)	143, 332, 629
AluI	AGCT	3 cut(s)	143, 332, 629
AlwI	GGATC	2 cut(s)	7, 376
AlwNI	CAGNNNCTG	3 cut(s)	146, 478, 619
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	140, 626
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	355, 449
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	518, 579
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	29, 179
BceAI	ACGGC	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	582
BisI	GCNGC	2 cut(s)	141, 627
BlsI	GCNGC	2 cut(s)	142, 628
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	355, 449
BmiI	GGNNCC	4 cut(s)	40, 356, 451, 462
BmrFI	CCNGG	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 364, 619
Bse1I	ACTGG	1 cut(s)	624
BseCI	ATCGAT	1 cut(s)	183
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	3 cut(s)	121, 364, 619
BseMII	CTCAG	2 cut(s)	138, 291
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	1 cut(s)	357
BshVI	ATCGAT	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	365, 464
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	121, 364, 619
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	12, 368
BspACI	CCGC	2 cut(s)	17, 491
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	139, 290
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	4 cut(s)	40, 356, 451, 462
BspPI	GGATC	2 cut(s)	7, 376
BsrGI	TGTACA	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	624
BssMI	GATC	2 cut(s)	12, 368
Bst4CI	ACNGT	3 cut(s)	172, 285, 405
Bst6I	CTCTTC	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	398
BstDEI	CTNAG	4 cut(s)	147, 203, 277, 502
BstF5I	GGATG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	15, 371
BstMBI	GATC	2 cut(s)	12, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	357
BsuTUI	ATCGAT	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	199
CaiI	CAGNNNCTG	3 cut(s)	146, 478, 619
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	355, 449
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	304, 399
CviAII	CATG	2 cut(s)	65, 290
CviQI	GTAC	2 cut(s)	304, 399
DdeI	CTNAG	4 cut(s)	147, 203, 277, 502
DpnI	GATC	2 cut(s)	14, 370
DpnII	GATC	2 cut(s)	12, 368
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
Eco32I	GATATC	2 cut(s)	181, 610
Eco47I	GGWCC	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	121
EcoRV	GATATC	2 cut(s)	181, 610
FaeI	CATG	2 cut(s)	68, 293
FaiI	YATR	6 cut(s)	66, 132, 162, 291, 297, 408
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	2 cut(s)	64, 289
FauI	CCCGC	2 cut(s)	24, 484
Fnu4HI	GCNGC	2 cut(s)	141, 627
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	141, 627
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	141, 627
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	365, 464
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	68, 293
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	154, 325
HpaII	CCGG	2 cut(s)	365, 464
HphI	GGTGA	2 cut(s)	518, 579
Hpy166II	GTNNAC	3 cut(s)	238, 401, 544
Hpy188I	TCNGA	2 cut(s)	280, 480
Hpy188III	TCNNGA	2 cut(s)	10, 613
Hpy8I	GTNNAC	3 cut(s)	238, 401, 544
HpyAV	CCTTC	2 cut(s)	214, 598
HpyCH4III	ACNGT	3 cut(s)	172, 285, 405
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	134, 342, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	4 cut(s)	147, 203, 277, 502
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	68, 293
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	12, 368
LmnI	GCTCC	2 cut(s)	44, 466
LpnPI	CCDG	5 cut(s)	378, 466, 477, 605, 626
Lsp1109I	GCAGC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	116, 285, 506
MalI	GATC	2 cut(s)	14, 370
MboI	GATC	2 cut(s)	12, 368
MboII	GAAGA	3 cut(s)	97, 163, 258
MluCI	AATT	4 cut(s)	271, 389, 523, 597
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	40, 52, 210, 274, 488, 561
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	123, 294
MspI	CCGG	2 cut(s)	365, 464
MspR9I	CCNGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	12, 368
NlaIII	CATG	2 cut(s)	68, 293
NlaIV	GGNNCC	4 cut(s)	40, 356, 451, 462
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	3 cut(s)	116, 285, 506
NspI	RCATGY	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	123
PciI	ACATGT	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	619
PkrI	GCNGC	2 cut(s)	142, 628
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	289
Psp1406I	AACGTT	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	4 cut(s)	40, 356, 451, 462
PspPI	GGNCC	2 cut(s)	355, 449
PstNI	CAGNNNCTG	3 cut(s)	146, 478, 619
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	305, 400
RsaNI	GTAC	2 cut(s)	304, 399
RseI	CAYNNNNRTG	2 cut(s)	123, 294
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	141, 627
Sau3AI	GATC	2 cut(s)	12, 368
Sau96I	GGNCC	2 cut(s)	355, 449
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	123, 294
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	271, 389, 523, 597
SsiI	CCGC	2 cut(s)	17, 491
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	172, 285, 405
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	11, 183
TasI	AATT	4 cut(s)	271, 389, 523, 597
TatI	WGTACW	2 cut(s)	303, 398
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	3 cut(s)	116, 285, 506
TseI	GCWGC	2 cut(s)	140, 626
Tsp45I	GTSAC	3 cut(s)	116, 285, 506
TspGWI	ACGGA	1 cut(s)	392
Tth111I	GACNNNGTC	1 cut(s)	512
Van91I	CCANNNNNTGG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.