Rorug06G0287000

Belongs to the glutathione peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010159
Physical Location & Seq
Reverse (-)
43715336 .. 43717367
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0287000.1

Sequence Viewer

Length: 1110 bp
ATGTCTCCTCCTAGGGTTTGTTCCGGTGCCACCATGGCTGTTGCCCTAGTGCTAATGGTGGCAATGAGCACGGTGATTCTCGCACCTCATCAAACTGAGGCAGCTCGCGCTTTCTTTGTTTTCGGAGACTCTCTTGTGGACAACGGAAACAACAATTACTTGGCCACCACCGCTCGTGCCGATTCTCCTCCCTACGGCATTGATTTCCCTACCCACCACCCCACCGGCCGCTTCTCCAACGGCTTAAACCTCCCTGACCTCATCAGATCGGAGCTAGTCTTGCCATATTTGAGCAGTGAGCTCACCGGACAAAAGATGCTTATTGGTGCTAACTTTGCTTCTGCTGGAATTGGAATCCTCAATGATACAGGGGTTCAATTTATCAACATAATAAGGATCTTCAGCCAGTTTGAGATGTTCCAGCAATACCAGCAACGAGTGAGTGCCCTAATCGGAGCAGCGCAAGTCAAGAGGCTGGTAAACGACGCTCTTGTCCTCATAACTCTCGGTGGCAATGACTTCGTCAACAACTACTTCTTGGTACCCTTCTCTGCAAGATCACGCCAGTACTCAATCCCTCAGTACTCCCAGTACCTCATCTCCGAGTACCGCAAGATTCTCCTGAGGCTATTTGAATTAGGAGGGAGAAGGGTGTTGGTGACCGGTACAGGCCCATTAGGCTGTGTTCCCGCCGCTATGGCCCAGAGGAGTAGGAATGGTGAATGTGCACCAGAGCTCCAGAGGGCAGCAGCCATCTTCAATCCCCTGCTTGTCCAGATGGTTCAGGGACTCAACGCTCAGCTTGGTACTGATGCTTTCGTTGCTGCTAATGCTTTTGCAAATGTGGAGTTCCTCAGTAACCCCCGGAAATATGGCTTTGTTACGTCAAAGGTGGCTTGTTGCGGGCAAGGACCGTACAATGGGTTGGGACTATGTACCCCATTGTCGAATCTGTGCTCCAACCGGGATGTGTATGCGTTTTGGGATCCTTTCCATCCATCTGAGCGGGCGAACCGGCTGATTGTGCAGACGATCATAACCGGGTCTAGCAAGTACATGAGCCCTATGAACCTAAGCACCATCATGGCCATGGACTCCGGGAATAACTAG

Protein Analysis

369

Amino Acids

40.15

Weight (kDa)

8.83

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 39 - 343 4.7e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
Acc65I GGTACC 1 cut(s) 541
AccB1I GGYRCC 2 cut(s) 26, 541
AccBSI CCGCTC 2 cut(s) 173, 1006
AccII CGCG 1 cut(s) 108
AciI CCGC 7 cut(s) 171, 229, 610, 690, 693, 903, 1006
AclWI GGATC 3 cut(s) 404, 980, 993
AcoI YGGCCR 3 cut(s) 162, 226, 1086
AcuI CTGAAG 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 194, 920
AgeI ACCGGT 1 cut(s) 662
AgsI TTSAA 3 cut(s) 377, 635, 760
AluBI AGCT 5 cut(s) 104, 274, 301, 736, 802
AluI AGCT 5 cut(s) 104, 274, 301, 736, 802
Alw21I GWGCWC 5 cut(s) 71, 303, 730, 738, 959
Alw26I GTCTC 2 cut(s) 9, 120
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 3 cut(s) 404, 980, 993
AoxI GGCC 5 cut(s) 162, 226, 670, 699, 1086
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 5 cut(s) 101, 458, 746, 749, 824
AsiGI ACCGGT 1 cut(s) 662
Asp718I GGTACC 1 cut(s) 541
AspA2I CCTAGG 1 cut(s) 11
AspLEI GCGC 2 cut(s) 110, 463
AspS9I GGNCC 3 cut(s) 671, 700, 911
AsuC2I CCSGG 4 cut(s) 865, 965, 1042, 1099
AsuHPI GGTGA 4 cut(s) 85, 295, 670, 731
AvaII GGWCC 1 cut(s) 911
AvrII CCTAGG 1 cut(s) 11
AxyI CCTNAGG 1 cut(s) 623
BaeGI GKGCMC 2 cut(s) 448, 730
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BalI TGGCCA 2 cut(s) 164, 1088
BamHI GGATCC 1 cut(s) 985
BanI GGYRCC 2 cut(s) 26, 541
BanII GRGCYC 3 cut(s) 303, 738, 1064
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 5 cut(s) 71, 303, 730, 738, 959
BbvI GCAGC 5 cut(s) 113, 470, 758, 761, 811
BccI CCATC 5 cut(s) 761, 772, 1002, 1006, 1088
BceAI ACGGC 2 cut(s) 211, 256
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BcnI CCSGG 4 cut(s) 865, 965, 1042, 1099
BcoDI GTCTC 2 cut(s) 9, 120
BfaI CTAG 5 cut(s) 12, 47, 275, 1047, 1108
BglI GCCNNNNNGGC 3 cut(s) 35, 678, 698
BisI GCNGC 7 cut(s) 102, 229, 459, 693, 747, 750, 825
BlnI CCTAGG 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 7 cut(s) 103, 230, 460, 694, 748, 751, 826
BmcAI AGTACT 2 cut(s) 569, 584
Bme1390I CCNGG 4 cut(s) 865, 965, 1042, 1099
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 3 cut(s) 671, 700, 911
BmiI GGNNCC 3 cut(s) 28, 543, 987
BmrFI CCNGG 4 cut(s) 865, 965, 1042, 1099
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 2 cut(s) 306, 802
BmuI ACTGGG 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 1073
Bpu1102I GCTNAGC 1 cut(s) 798
BpuMI CCSGG 4 cut(s) 865, 965, 1042, 1099
BsaJI CCNNGG 4 cut(s) 11, 33, 863, 1089
BsaWI WCCGGW 3 cut(s) 23, 305, 662
BsaXI ACNNNNNCTCC 4 cut(s) 584, 614, 720, 750
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 920
Bse118I RCCGGY 3 cut(s) 224, 662, 1014
Bse1I ACTGG 3 cut(s) 406, 565, 589
Bse21I CCTNAGG 1 cut(s) 623
Bse3DI GCAATG 2 cut(s) 69, 520
BseDI CCNNGG 4 cut(s) 11, 33, 863, 1089
BseGI GGATG 2 cut(s) 973, 994
BseLI CCNNNNNNNGG 2 cut(s) 194, 920
BseMI GCAATG 2 cut(s) 69, 520
BseMII CTCAG 6 cut(s) 87, 593, 614, 812, 868, 993
BseNI ACTGG 3 cut(s) 406, 565, 589
BseRI GAGGAG 2 cut(s) 177, 721
BseSI GKGCMC 2 cut(s) 448, 730
BseX3I CGGCCG 1 cut(s) 226
BseXI GCAGC 5 cut(s) 113, 470, 758, 761, 811
BsgI GTGCAG 1 cut(s) 1046
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 5 cut(s) 164, 228, 672, 701, 1088
BshNI GGYRCC 2 cut(s) 26, 541
BshTI ACCGGT 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 5 cut(s) 71, 303, 730, 738, 959
BsiSI CCGG 9 cut(s) 24, 225, 306, 663, 865, 964, 1015, 1041, 1098
BslFI GGGAC 2 cut(s) 801, 942
BslI CCNNNNNNNGG 2 cut(s) 194, 920
BsmAI GTCTC 2 cut(s) 9, 120
BsmFI GGGAC 2 cut(s) 801, 942
BsnI GGCC 5 cut(s) 164, 228, 672, 701, 1088
Bsp1286I GDGCHC 7 cut(s) 71, 303, 448, 730, 738, 959, 1064
Bsp143I GATC 5 cut(s) 266, 396, 557, 985, 1032
Bsp1720I GCTNAGC 1 cut(s) 798
Bsp19I CCATGG 2 cut(s) 33, 1089
BspACI CCGC 7 cut(s) 171, 229, 610, 690, 693, 903, 1006
BspANI GGCC 5 cut(s) 164, 228, 672, 701, 1088
BspCNI CTCAG 6 cut(s) 88, 592, 615, 811, 867, 994
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 28, 543, 987
BspPI GGATC 3 cut(s) 404, 980, 993
BspT107I GGYRCC 2 cut(s) 26, 541
BsrBI CCGCTC 2 cut(s) 173, 1006
BsrDI GCAATG 2 cut(s) 69, 520
BsrFI RCCGGY 3 cut(s) 224, 662, 1014
BsrI ACTGG 3 cut(s) 406, 565, 589
BssAI RCCGGY 3 cut(s) 224, 662, 1014
BssECI CCNNGG 4 cut(s) 11, 33, 863, 1089
BssMI GATC 5 cut(s) 266, 396, 557, 985, 1032
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 3 cut(s) 11, 33, 1089
Bst2BI CACGAG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 73, 915
BstC8I GCNNGC 3 cut(s) 106, 905, 1008
BstDEI CTNAG 7 cut(s) 96, 579, 623, 798, 854, 1002, 1073
BstDSI CCRYGG 2 cut(s) 33, 1089
BstEII GGTNACC 1 cut(s) 658
BstF5I GGATG 2 cut(s) 973, 994
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 2 cut(s) 110, 463
BstKTI GATC 5 cut(s) 269, 399, 560, 988, 1035
BstMAI GTCTC 2 cut(s) 9, 120
BstMBI GATC 5 cut(s) 266, 396, 557, 985, 1032
BstMCI CGRYCG 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 658
BstSCI CCNGG 4 cut(s) 863, 963, 1040, 1097
BstSLI GKGCMC 2 cut(s) 448, 730
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 5 cut(s) 113, 470, 758, 761, 811
BstX2I RGATCY 2 cut(s) 396, 985
BstYI RGATCY 2 cut(s) 396, 985
BstZI CGGCCG 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 623
BsuRI GGCC 5 cut(s) 164, 228, 672, 701, 1088
BtgI CCRYGG 2 cut(s) 33, 1089
BtsCI GGATG 2 cut(s) 973, 994
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 106, 905, 1008
CfoI GCGC 2 cut(s) 110, 463
Cfr10I RCCGGY 3 cut(s) 224, 662, 1014
Cfr13I GGNCC 3 cut(s) 671, 700, 911
CseI GACGC 1 cut(s) 494
CspAI ACCGGT 1 cut(s) 662
CviAII CATG 4 cut(s) 34, 1057, 1084, 1090
DdeI CTNAG 7 cut(s) 96, 579, 623, 798, 854, 1002, 1073
DpnI GATC 5 cut(s) 268, 398, 559, 987, 1034
DpnII GATC 5 cut(s) 266, 396, 557, 985, 1032
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
EaeI YGGCCR 3 cut(s) 162, 226, 1086
EagI CGGCCG 1 cut(s) 226
Ecl136II GAGCTC 2 cut(s) 301, 736
EclXI CGGCCG 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 11, 33, 1089
Eco24I GRGCYC 3 cut(s) 303, 738, 1064
Eco47I GGWCC 1 cut(s) 911
Eco52I CGGCCG 1 cut(s) 226
Eco53kI GAGCTC 2 cut(s) 301, 736
Eco57I CTGAAG 1 cut(s) 385
Eco81I CCTNAGG 1 cut(s) 623
Eco91I GGTNACC 1 cut(s) 658
EcoICRI GAGCTC 2 cut(s) 301, 736
EcoO65I GGTNACC 1 cut(s) 658
EcoT14I CCWWGG 3 cut(s) 11, 33, 1089
EcoT38I GRGCYC 3 cut(s) 303, 738, 1064
ErhI CCWWGG 3 cut(s) 11, 33, 1089
FaeI CATG 4 cut(s) 37, 1060, 1087, 1093
FaqI GGGAC 2 cut(s) 801, 942
FatI CATG 4 cut(s) 33, 1056, 1083, 1089
FauI CCCGC 3 cut(s) 697, 896, 999
Fnu4HI GCNGC 7 cut(s) 102, 229, 459, 693, 747, 750, 825
FokI GGATG 2 cut(s) 980, 981
FriOI GRGCYC 3 cut(s) 303, 738, 1064
Fsp4HI GCNGC 7 cut(s) 102, 229, 459, 693, 747, 750, 825
FspBI CTAG 5 cut(s) 12, 47, 275, 1047, 1108
GlaI GCGC 2 cut(s) 109, 462
GluI GCNGC 7 cut(s) 102, 229, 459, 693, 747, 750, 825
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 5 cut(s) 164, 228, 672, 701, 1088
HapII CCGG 9 cut(s) 24, 225, 306, 663, 865, 964, 1015, 1041, 1098
HgaI GACGC 1 cut(s) 494
HhaI GCGC 2 cut(s) 110, 463
Hin1II CATG 4 cut(s) 37, 1060, 1087, 1093
Hin6I GCGC 2 cut(s) 108, 461
HinP1I GCGC 2 cut(s) 108, 461
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 8 cut(s) 76, 128, 182, 354, 616, 789, 949, 1094
HpaII CCGG 9 cut(s) 24, 225, 306, 663, 865, 964, 1015, 1041, 1098
HphI GGTGA 4 cut(s) 85, 295, 670, 731
Hpy166II GTNNAC 4 cut(s) 139, 481, 526, 728
Hpy188I TCNGA 6 cut(s) 125, 266, 271, 455, 604, 1003
Hpy188III TCNNGA 4 cut(s) 469, 622, 739, 775
Hpy8I GTNNAC 4 cut(s) 139, 481, 526, 728
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 556, 642
HpyCH4III ACNGT 2 cut(s) 73, 915
HpyCH4IV ACGT 1 cut(s) 884
HpyCH4V TGCA 4 cut(s) 554, 728, 839, 1027
HpyF3I CTNAG 7 cut(s) 96, 579, 623, 798, 854, 1002, 1073
HpySE526I ACGT 1 cut(s) 884
Hsp92II CATG 4 cut(s) 37, 1060, 1087, 1093
HspAI GCGC 2 cut(s) 108, 461
KpnI GGTACC 1 cut(s) 545
Kzo9I GATC 5 cut(s) 266, 396, 557, 985, 1032
LmnI GCTCC 4 cut(s) 271, 455, 741, 962
Lsp1109I GCAGC 5 cut(s) 113, 470, 758, 761, 811
LweI GCATC 2 cut(s) 306, 802
MaeI CTAG 5 cut(s) 12, 47, 275, 1047, 1108
MaeII ACGT 1 cut(s) 884
MaeIII GTNAC 3 cut(s) 658, 857, 880
MalI GATC 5 cut(s) 268, 398, 559, 987, 1034
MbiI CCGCTC 2 cut(s) 173, 1006
MboI GATC 5 cut(s) 266, 396, 557, 985, 1032
MboII GAAGA 2 cut(s) 391, 748
MflI RGATCY 2 cut(s) 396, 985
MhlI GDGCHC 7 cut(s) 71, 303, 448, 730, 738, 959, 1064
MlsI TGGCCA 2 cut(s) 164, 1088
MluCI AATT 4 cut(s) 154, 348, 377, 635
MluNI TGGCCA 2 cut(s) 164, 1088
MlyI GAGTC 3 cut(s) 122, 783, 1088
MmeI TCCRAC 2 cut(s) 261, 984
Mox20I TGGCCA 2 cut(s) 164, 1088
MscI TGGCCA 2 cut(s) 164, 1088
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 2 cut(s) 1082, 1088
Msp20I TGGCCA 2 cut(s) 164, 1088
MspI CCGG 9 cut(s) 24, 225, 306, 663, 865, 964, 1015, 1041, 1098
MspR9I CCNGG 4 cut(s) 865, 965, 1042, 1099
MvnI CGCG 1 cut(s) 108
NciI CCSGG 4 cut(s) 865, 965, 1042, 1099
NcoI CCATGG 2 cut(s) 33, 1089
NdeII GATC 5 cut(s) 266, 396, 557, 985, 1032
NlaIII CATG 4 cut(s) 37, 1060, 1087, 1093
NlaIV GGNNCC 3 cut(s) 28, 543, 987
NmuCI GTSAC 1 cut(s) 658
PfeI GAWTC 5 cut(s) 76, 182, 354, 616, 949
PflFI GACNNNGTC 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 1097
PinAI ACCGGT 1 cut(s) 662
PkrI GCNGC 7 cut(s) 103, 230, 460, 694, 748, 751, 826
PleI GAGTC 3 cut(s) 122, 783, 1088
PpsI GAGTC 3 cut(s) 122, 783, 1088
Psp124BI GAGCTC 2 cut(s) 303, 738
PspEI GGTNACC 1 cut(s) 658
PspN4I GGNNCC 3 cut(s) 28, 543, 987
PspPI GGNCC 3 cut(s) 671, 700, 911
PsuI RGATCY 2 cut(s) 396, 985
PsyI GACNNNGTC 1 cut(s) 521
RseI CAYNNNNRTG 2 cut(s) 1082, 1088
SacI GAGCTC 2 cut(s) 303, 738
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 7 cut(s) 102, 229, 459, 693, 747, 750, 825
Sau3AI GATC 5 cut(s) 266, 396, 557, 985, 1032
Sau96I GGNCC 3 cut(s) 671, 700, 911
ScaI AGTACT 2 cut(s) 569, 584
SchI GAGTC 3 cut(s) 122, 783, 1088
ScrFI CCNGG 4 cut(s) 865, 965, 1042, 1099
SduI GDGCHC 7 cut(s) 71, 303, 448, 730, 738, 959, 1064
SfaNI GCATC 2 cut(s) 306, 802
SinI GGWCC 1 cut(s) 911
SmiMI CAYNNNNRTG 2 cut(s) 1082, 1088
Sse9I AATT 4 cut(s) 154, 348, 377, 635
SsiI CCGC 7 cut(s) 171, 229, 610, 690, 693, 903, 1006
SspMI CTAG 5 cut(s) 12, 47, 275, 1047, 1108
SstI GAGCTC 2 cut(s) 303, 738
StyD4I CCNGG 4 cut(s) 863, 963, 1040, 1097
StyI CCWWGG 3 cut(s) 11, 33, 1089
TaaI ACNGT 2 cut(s) 73, 915
TaiI ACGT 1 cut(s) 887
TaqI TCGA 1 cut(s) 947
TasI AATT 4 cut(s) 154, 348, 377, 635
TatI WGTACW 3 cut(s) 567, 582, 1053
TauI GCSGC 2 cut(s) 231, 695
TfiI GAWTC 5 cut(s) 76, 182, 354, 616, 949
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 5 cut(s) 101, 458, 746, 749, 824
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 1 cut(s) 1082
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 521
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 1087
XmaJI CCTAGG 1 cut(s) 11
XspI CTAG 5 cut(s) 12, 47, 275, 1047, 1108
ZrmI AGTACT 2 cut(s) 569, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.