Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Forward (+)

29203436 .. 29206009

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTTCCATTTATTTATCTCCCATAGTTCGAACAGGATGTGTTCAGACGAAAACAAGCCCAAGTAGATCATCCATGGCTTTCAGCTGGATCCCGCTCATCAAATCCTCACTTGGGTCCTCCAAATCAACACTTTTCCAACATGGCCTCTCTTTACAATCCTCTTACTCAAATGGGCGCTTCTTCAAATCCCGATCCTTGGTTGTTTATGCAAGAGCTGCTACAGAGAAATCTCTATATGATTTCACAGTCAAGGATATCGATGGGAAGGATGTTACTCTTAGCAAATTTAAGGGGAAGGTTCTTTTGATAGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAATTGTCACATGTGTACGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAGGAACCGGGATCAAATACAGAAATCAAGCAGTTTGCTTGTACACGGTATAAAGCCGAGTTCCCTATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGCGGGAGGTTTCTTAGGTGACATTATCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTAGTGGAGAGATATCCACCAACAACATCACCTTTTCAAATTGAGAAAGATATTCAGAAACTGGTTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

237

Amino Acids

26.16

Weight (kDa)

9.43

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	79 - 187	1.3e-43	Glutathione peroxidase
Redoxin	PF08534	79 - 138	6.7e-08	Redoxin
AhpC-TSA	PF00578	79 - 142	7e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	2 cut(s)	95, 569
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	4 cut(s)	85, 98, 189, 454
AcsI	RAATTY	2 cut(s)	287, 601
AfaI	GTAC	3 cut(s)	374, 383, 478
AfiI	CCNNNNNNNGG	3 cut(s)	114, 199, 442
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	187, 327, 348, 674
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	4 cut(s)	87, 218, 410, 539
AluI	AGCT	4 cut(s)	87, 218, 410, 539
AlwI	GGATC	4 cut(s)	85, 98, 189, 454
AlwNI	CAGNNNCTG	2 cut(s)	556, 697
AoxI	GGCC	2 cut(s)	145, 433
ApeKI	GCWGC	2 cut(s)	218, 704
ApoI	RAATTY	2 cut(s)	287, 601
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	3 cut(s)	117, 433, 527
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	596, 657
AsuII	TTCGAA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	117, 527
BamHI	GGATCC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	205, 691
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	444
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	181
BisI	GCNGC	2 cut(s)	219, 705
BlsI	GCNGC	2 cut(s)	220, 706
Bme1390I	CCNGG	2 cut(s)	437, 444
Bme18I	GGWCC	2 cut(s)	117, 527
BmgT120I	GGNCC	3 cut(s)	117, 433, 527
BmiI	GGNNCC	5 cut(s)	92, 118, 434, 441, 529
BmrFI	CCNGG	2 cut(s)	437, 444
Bpu14I	TTCGAA	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	75, 198
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 199, 442
Bse1I	ACTGG	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	437
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	75, 198
BseGI	GGATG	3 cut(s)	44, 71, 277
BseLI	CCNNNNNNNGG	3 cut(s)	114, 199, 442
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	205, 691
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	2 cut(s)	147, 435
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	443, 542
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	3 cut(s)	114, 199, 442
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	147, 435
Bsp119I	TTCGAA	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	476
Bsp143I	GATC	4 cut(s)	68, 90, 194, 446
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	95, 569
BspANI	GGCC	2 cut(s)	147, 435
BspCNI	CTCAG	1 cut(s)	368
BspDI	ATCGAT	1 cut(s)	261
BspLI	GGNNCC	5 cut(s)	92, 118, 434, 441, 529
BspPI	GGATC	4 cut(s)	85, 98, 189, 454
BspT104I	TTCGAA	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	702
BssECI	CCNNGG	2 cut(s)	75, 198
BssMI	GATC	4 cut(s)	68, 90, 194, 446
BssT1I	CCWWGG	2 cut(s)	75, 198
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	250, 483
Bst6I	CTCTTC	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	281, 355, 580
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	44, 71, 277
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	4 cut(s)	71, 93, 197, 449
BstMBI	GATC	4 cut(s)	68, 90, 194, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	435, 442
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	205, 691
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	147, 435
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	44, 71, 277
CaiI	CAGNNNCTG	2 cut(s)	556, 697
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	3 cut(s)	117, 433, 527
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	3 cut(s)	373, 382, 477
CviAII	CATG	3 cut(s)	76, 143, 368
CviQI	GTAC	3 cut(s)	373, 382, 477
DdeI	CTNAG	3 cut(s)	281, 355, 580
DpnI	GATC	4 cut(s)	70, 92, 196, 448
DpnII	GATC	4 cut(s)	68, 90, 194, 446
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	75, 198
Eco32I	GATATC	2 cut(s)	259, 650
Eco47I	GGWCC	2 cut(s)	117, 527
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	2 cut(s)	259, 650
EcoT14I	CCWWGG	2 cut(s)	75, 198
ErhI	CCWWGG	2 cut(s)	75, 198
FaeI	CATG	3 cut(s)	79, 146, 371
FaiI	YATR	8 cut(s)	26, 77, 144, 210, 238, 240, 369, 486
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	3 cut(s)	75, 142, 367
FauI	CCCGC	2 cut(s)	102, 562
Fnu4HI	GCNGC	2 cut(s)	219, 705
FokI	GGATG	3 cut(s)	51, 58, 284
Fsp4HI	GCNGC	2 cut(s)	219, 705
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	219, 705
GsaI	CCCAGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	147, 435
HapII	CCGG	2 cut(s)	443, 542
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	79, 146, 371
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	443, 542
HphI	GGTGA	2 cut(s)	596, 657
Hpy166II	GTNNAC	4 cut(s)	316, 373, 479, 622
Hpy188I	TCNGA	4 cut(s)	48, 358, 558, 693
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	4 cut(s)	316, 373, 479, 622
HpyAV	CCTTC	2 cut(s)	262, 292
HpyCH4III	ACNGT	2 cut(s)	250, 483
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	212, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	281, 355, 580
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	79, 146, 371
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	68, 90, 194, 446
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	8 cut(s)	21, 73, 422, 449, 456, 544, 555, 683
Lsp1109I	GCAGC	2 cut(s)	205, 691
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	274, 363, 584
MalI	GATC	4 cut(s)	70, 92, 196, 448
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	4 cut(s)	68, 90, 194, 446
MboII	GAAGA	2 cut(s)	175, 336
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	5 cut(s)	287, 349, 359, 601, 675
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	118, 130, 158, 172, 352, 566
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	2 cut(s)	443, 542
MspR9I	CCNGG	2 cut(s)	437, 444
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	68, 90, 194, 446
NlaIII	CATG	3 cut(s)	79, 146, 371
NlaIV	GGNNCC	5 cut(s)	92, 118, 434, 441, 529
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	363, 584
NspI	RCATGY	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	31
PciI	ACATGT	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	220, 706
PpuMI	RGGWCCY	1 cut(s)	117
PscI	ACATGT	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	5 cut(s)	92, 118, 434, 441, 529
PspPI	GGNCC	3 cut(s)	117, 433, 527
PspPPI	RGGWCCY	1 cut(s)	117
PstNI	CAGNNNCTG	2 cut(s)	556, 697
PsuI	RGATCY	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	87
RsaI	GTAC	3 cut(s)	374, 383, 478
RsaNI	GTAC	3 cut(s)	373, 382, 477
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	219, 705
Sau3AI	GATC	4 cut(s)	68, 90, 194, 446
Sau96I	GGNCC	3 cut(s)	117, 433, 527
ScrFI	CCNGG	2 cut(s)	437, 444
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	31
SinI	GGWCC	2 cut(s)	117, 527
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	5 cut(s)	287, 349, 359, 601, 675
SsiI	CCGC	2 cut(s)	95, 569
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	435, 442
StyI	CCWWGG	2 cut(s)	75, 198
TaaI	ACNGT	2 cut(s)	250, 483
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	31, 261
TasI	AATT	5 cut(s)	287, 349, 359, 601, 675
TatI	WGTACW	2 cut(s)	381, 476
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	363, 584
TseI	GCWGC	2 cut(s)	218, 704
Tsp45I	GTSAC	2 cut(s)	363, 584
VpaK11BI	GGWCC	2 cut(s)	117, 527
XapI	RAATTY	2 cut(s)	287, 601
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.