Rh6AG398500

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
59665389 .. 59668032
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG398500.1

Sequence Viewer

Length: 774 bp
ATGGCTTCCATCTCTCTCTCTCCAACAGTTCCAACAGGATACGTTCAAACGAAAACAAAAACAAGCCCAAGTAGTTCAGCTCCATGCCCATCCATGGCTTTCTCGATCCCGCCCATCAAATCCTCACTCGGCTCCTCTAAATCATCACTTTTCCAACATGGCTTCTCTCTACAATCATCTTATTCAAATGGGCGCTTCTTCAAATCCCGTCACTCGGGTGTTTATGCAAGAGCAGCTACTGAGAAGACTCTCTATGATTTTACAGTCAAGGATATCGATGGAAAGGATGTCCCTCTTAGCAAGTTTAAGGGGAAGGTTCTTTTGGTTGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAACTGTCACATGTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCGGGATCAAATACGGAAATCAAGCAATTTGCTTGTACACGGTATAAAGCCGAATTCCCCATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGCGGGAGGTTTCTTAGGTGACATTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTATTGGAGAGGTATCCACCAACAACATCACCTTTTCAAATTGAGGTATATGCTTTTCCTTGTTTGAGTTTCTGCAATTCCTTCATAGGTGTGTTTCCTGAGATAGTCTCTTTCAGTTTGTAA

Protein Analysis

257

Amino Acids

28.2

Weight (kDa)

9.1

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 83 - 143 6.3e-07 Redoxin
GSHPx PF00255 84 - 192 2.5e-43 Glutathione peroxidase
AhpC-TSA PF00578 84 - 147 3.3e-07 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 584
AclI AACGTT 1 cut(s) 333
AclWI GGATC 2 cut(s) 100, 469
AcsI RAATTY 2 cut(s) 509, 616
AfaI GTAC 2 cut(s) 398, 493
AfiI CCNNNNNNNGG 3 cut(s) 94, 214, 457
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 6 cut(s) 47, 186, 202, 342, 363, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 4 cut(s) 80, 236, 425, 554
AluI AGCT 4 cut(s) 80, 236, 425, 554
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 2 cut(s) 100, 469
AlwNI CAGNNNCTG 2 cut(s) 239, 571
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 509, 616
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 448, 542
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 2 cut(s) 611, 672
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 245
BccI CCATC 4 cut(s) 17, 97, 122, 272
BciVI GTATCC 2 cut(s) 32, 675
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 196
BfuI GTATCC 2 cut(s) 32, 675
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 459
Bme18I GGWCC 1 cut(s) 542
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 448, 542
BmiI GGNNCC 3 cut(s) 133, 449, 544
BmrFI CCNGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 556
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 214, 457
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 89, 292
BseLI CCNNNNNNNGG 3 cut(s) 94, 214, 457
BseMII CTCAG 3 cut(s) 231, 384, 741
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 545
BshFI GGCC 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 2 cut(s) 458, 557
BslFI GGGAC 2 cut(s) 275, 528
BslI CCNNNNNNNGG 3 cut(s) 94, 214, 457
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 2 cut(s) 275, 528
BsnI GGCC 1 cut(s) 450
BsoBI CYCGRG 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 491
Bsp143I GATC 2 cut(s) 105, 461
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 110, 584
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 3 cut(s) 232, 383, 742
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 133, 449, 544
BspPI GGATC 2 cut(s) 100, 469
BsrGI TGTACA 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 105, 461
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 28, 265, 378, 498
Bst6I CTCTTC 1 cut(s) 364
BstAUI TGTACA 1 cut(s) 491
BstDEI CTNAG 5 cut(s) 240, 296, 370, 595, 750
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 89, 292
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 108, 464
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 2 cut(s) 105, 461
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 276
BsuI GTATCC 2 cut(s) 32, 675
BsuRI GGCC 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 89, 292
CaiI CAGNNNCTG 2 cut(s) 239, 571
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 448, 542
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 397, 492
CviAII CATG 4 cut(s) 84, 94, 158, 383
CviQI GTAC 2 cut(s) 397, 492
DdeI CTNAG 5 cut(s) 240, 296, 370, 595, 750
DpnI GATC 2 cut(s) 107, 463
DpnII GATC 2 cut(s) 105, 461
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 93
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 509
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 4 cut(s) 87, 97, 161, 386
FaqI GGGAC 2 cut(s) 275, 528
FatI CATG 4 cut(s) 83, 93, 157, 382
FauI CCCGC 2 cut(s) 117, 577
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 76, 299
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 549
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 1 cut(s) 450
HapII CCGG 2 cut(s) 458, 557
HhaI GCGC 1 cut(s) 195
Hin1II CATG 4 cut(s) 87, 97, 161, 386
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 2 cut(s) 247, 418
HpaII CCGG 2 cut(s) 458, 557
HphI GGTGA 2 cut(s) 611, 672
Hpy166II GTNNAC 3 cut(s) 331, 494, 637
Hpy188I TCNGA 2 cut(s) 373, 573
Hpy188III TCNNGA 2 cut(s) 103, 749
Hpy8I GTNNAC 3 cut(s) 331, 494, 637
HpyAV CCTTC 2 cut(s) 307, 742
HpyCH4III ACNGT 4 cut(s) 28, 265, 378, 498
HpyCH4IV ACGT 2 cut(s) 42, 333
HpyCH4V TGCA 3 cut(s) 227, 435, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 5 cut(s) 240, 296, 370, 595, 750
HpySE526I ACGT 2 cut(s) 42, 333
Hsp92II CATG 4 cut(s) 87, 97, 161, 386
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 105, 461
LmnI GCTCC 3 cut(s) 85, 137, 559
LpnPI CCDG 5 cut(s) 21, 471, 559, 570, 762
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 42, 333
MaeIII GTNAC 3 cut(s) 209, 378, 599
MalI GATC 2 cut(s) 107, 463
MboI GATC 2 cut(s) 105, 461
MboII GAAGA 3 cut(s) 190, 256, 351
MluCI AATT 6 cut(s) 364, 482, 509, 616, 690, 727
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 3 cut(s) 47, 56, 178
MnlI CCTC 7 cut(s) 133, 145, 303, 367, 581, 654, 688
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 3 cut(s) 216, 387, 740
MspI CCGG 2 cut(s) 458, 557
MspR9I CCNGG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 459
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 105, 461
NlaIII CATG 4 cut(s) 87, 97, 161, 386
NlaIV GGNNCC 3 cut(s) 133, 449, 544
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 3 cut(s) 209, 378, 599
NspI RCATGY 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 216
PciI ACATGT 1 cut(s) 382
PfeI GAWTC 1 cut(s) 418
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PscI ACATGT 1 cut(s) 382
Psp1406I AACGTT 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 545
PspN4I GGNNCC 3 cut(s) 133, 449, 544
PspPI GGNCC 2 cut(s) 448, 542
PstNI CAGNNNCTG 2 cut(s) 239, 571
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 2 cut(s) 398, 493
RsaNI GTAC 2 cut(s) 397, 492
RseI CAYNNNNRTG 3 cut(s) 216, 387, 740
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 105, 461
Sau96I GGNCC 2 cut(s) 448, 542
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 459
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 3 cut(s) 216, 387, 740
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 6 cut(s) 364, 482, 509, 616, 690, 727
SsiI CCGC 2 cut(s) 110, 584
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 457
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 4 cut(s) 28, 265, 378, 498
TaiI ACGT 2 cut(s) 45, 336
TaqI TCGA 2 cut(s) 104, 276
TasI AATT 6 cut(s) 364, 482, 509, 616, 690, 727
TatI WGTACW 2 cut(s) 396, 491
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 3 cut(s) 209, 378, 599
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 3 cut(s) 209, 378, 599
TspDTI ATGAA 1 cut(s) 724
TspGWI ACGGA 1 cut(s) 485
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 2 cut(s) 509, 616
XceI RCATGY 1 cut(s) 386
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.