Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010159

Physical Location & Seq

Genomic Coordinates Reverse (-)

59801893 .. 59804375

Gene Structure 2483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG412900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTTCCATTTCTCTCTCTCCAACAGTTCCAACAGGATACGTTCAAACGAAAACAAAAACAAGCCCAAGTAGTTCAGCTCCATGCCCATCCATGGCTTTCTCGATCCCGCCCATCAAATCCTCACTCGGCTCCTCTAAATCATCACTTTTCCAACATGGCTTCTCTCTACAATCATCTTATTCAAATGGGCGCTTCTTCAAATCCCGTCACTCGGGTGTTTATGCAAGAGCAGCTACTGAGAAGACTCTCTATGATTTTACCGTCAAGGATATCGATGGAAAGGATGTCCCTCTTAGCAAGTTTAAGGGGAAGGTTCTTTTGGTTGTCAACGTTGCTTCAAAATGTGGCTTGACCTCTTCAAATTACTCAGAACTGTCACATGTGTATGAGAAGTACAAAACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAGTTTGGGGGCCAAGAACCGGGATCAAATACAGAAATCAAGCAATTTGCTTGTACACGGTATAAAGCCGAATTCCCCATTTTTGATAAGGTTGATGTCAATGGTCCCAGCACAGCTCCGGTTTATCAGTTTCTGAAATCAAGTGCGGGAGGTTTCTTAGGTGACATTGTCAAGTGGAATTTTGAGAAGTTTTTGGTGGACAAGAATGGTAAAGTAGTGGAGAGGTATCCACCAACAACATCACCTTTTCAAATTGAGCTGCTGTTGCAGCTTTCATTGGATAGGATAAAAATTTCATTCATACCCAAAAATAAAGGAGATTGGTTAAGCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

257

Amino Acids

28.3

Weight (kDa)

9.41

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	83 - 143	5.8e-07	Redoxin
GSHPx	PF00255	84 - 192	2.5e-43	Glutathione peroxidase
AhpC-TSA	PF00578	84 - 148	3e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25080 AT4G31870 AT4G31870
fragaria_vesca	FvH4_2g41210
malus_domestica	MD08G1055100.v1.1 MD15G1042100.v1.1
prunus_persica	Prupe.1G395200_v2.0.a1
pyrus_communis	pycom08g04540
rosa_chinensis	RchiOBHm_Chr6g0299301
rosa_laevigata	RLG00000011444
rosa_multiflora	Rmu_sc0001434.1_g000002 Rmu_sc0037973.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168810
rosa_rugosa	Rorug06G0286900 Rorug06G0287000 Rorug06G0287000
rosa_samantha	Rh6AG398500 Rh6BG406900 Rh6CG412900 Rh6DG399600
rosa_wichuraiana	Rw6G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 584
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	2 cut(s)	100, 469
AcsI	RAATTY	3 cut(s)	509, 616, 729
AfaI	GTAC	2 cut(s)	398, 493
AfiI	CCNNNNNNNGG	3 cut(s)	94, 214, 457
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	6 cut(s)	47, 186, 202, 342, 363, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AleI	CACNNNNGTG	1 cut(s)	216
AluBI	AGCT	6 cut(s)	80, 236, 425, 554, 697, 709
AluI	AGCT	6 cut(s)	80, 236, 425, 554, 697, 709
AlwI	GGATC	2 cut(s)	100, 469
AlwNI	CAGNNNCTG	2 cut(s)	239, 571
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	233, 697, 706
ApoI	RAATTY	3 cut(s)	509, 616, 729
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	448, 542
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	611, 672
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	245, 684, 718
BccI	CCATC	3 cut(s)	97, 122, 272
BciVI	GTATCC	2 cut(s)	32, 675
BcnI	CCSGG	1 cut(s)	459
BfaI	CTAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	2 cut(s)	32, 675
BisI	GCNGC	3 cut(s)	234, 698, 707
BlsI	GCNGC	3 cut(s)	235, 699, 708
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	448, 542
BmiI	GGNNCC	3 cut(s)	133, 449, 544
BmrFI	CCNGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 214, 457
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	89, 292
BseLI	CCNNNNNNNGG	3 cut(s)	94, 214, 457
BseMII	CTCAG	2 cut(s)	231, 384
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	245, 684, 718
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	1 cut(s)	450
BshVI	ATCGAT	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	458, 557
BslFI	GGGAC	2 cut(s)	275, 528
BslI	CCNNNNNNNGG	3 cut(s)	94, 214, 457
BsmFI	GGGAC	2 cut(s)	275, 528
BsnI	GGCC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	105, 461
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	2 cut(s)	110, 584
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	232, 383
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	3 cut(s)	133, 449, 544
BspPI	GGATC	2 cut(s)	100, 469
BsrGI	TGTACA	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	105, 461
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	4 cut(s)	28, 265, 378, 498
Bst6I	CTCTTC	1 cut(s)	364
BstAUI	TGTACA	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	771
BstDEI	CTNAG	4 cut(s)	240, 296, 370, 595
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	89, 292
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	108, 464
BstMBI	GATC	2 cut(s)	105, 461
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 703, 706
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	245, 684, 718
BstV2I	GAAGAC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	276
BsuI	GTATCC	2 cut(s)	32, 675
BsuRI	GGCC	1 cut(s)	450
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	89, 292
CaiI	CAGNNNCTG	2 cut(s)	239, 571
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	448, 542
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	397, 492
CviAII	CATG	4 cut(s)	84, 94, 158, 383
CviQI	GTAC	2 cut(s)	397, 492
DdeI	CTNAG	4 cut(s)	240, 296, 370, 595
DpnI	GATC	2 cut(s)	107, 463
DpnII	GATC	2 cut(s)	105, 461
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	509
EcoRV	GATATC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	87, 97, 161, 386
FaiI	YATR	9 cut(s)	85, 95, 159, 225, 255, 384, 390, 501, 740
FaqI	GGGAC	2 cut(s)	275, 528
FatI	CATG	4 cut(s)	83, 93, 157, 382
FauI	CCCGC	2 cut(s)	117, 577
Fnu4HI	GCNGC	3 cut(s)	234, 698, 707
FokI	GGATG	2 cut(s)	76, 299
Fsp4HI	GCNGC	3 cut(s)	234, 698, 707
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	234, 698, 707
GsaI	CCCAGC	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	2 cut(s)	458, 557
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	87, 97, 161, 386
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	247, 418
HpaII	CCGG	2 cut(s)	458, 557
HphI	GGTGA	2 cut(s)	611, 672
Hpy166II	GTNNAC	3 cut(s)	331, 494, 637
Hpy188I	TCNGA	2 cut(s)	373, 573
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	331, 494, 637
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	4 cut(s)	28, 265, 378, 498
HpyCH4IV	ACGT	3 cut(s)	42, 333, 770
HpyCH4V	TGCA	3 cut(s)	227, 435, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 703, 706
HpyF3I	CTNAG	4 cut(s)	240, 296, 370, 595
HpySE526I	ACGT	3 cut(s)	42, 333, 770
Hsp92II	CATG	4 cut(s)	87, 97, 161, 386
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	105, 461
LmnI	GCTCC	3 cut(s)	85, 137, 559
LpnPI	CCDG	4 cut(s)	21, 471, 559, 570
Lsp1109I	GCAGC	3 cut(s)	245, 684, 718
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	3 cut(s)	42, 333, 770
MaeIII	GTNAC	3 cut(s)	209, 378, 599
MalI	GATC	2 cut(s)	107, 463
MboI	GATC	2 cut(s)	105, 461
MboII	GAAGA	3 cut(s)	190, 256, 351
MluCI	AATT	6 cut(s)	364, 482, 509, 616, 690, 729
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	3 cut(s)	47, 56, 178
MnlI	CCTC	6 cut(s)	133, 145, 303, 367, 581, 654
MseI	TTAA	2 cut(s)	306, 764
MslI	CAYNNNNRTG	2 cut(s)	216, 387
MspI	CCGG	2 cut(s)	458, 557
MspR9I	CCNGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	233, 703, 706
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	105, 461
NlaIII	CATG	4 cut(s)	87, 97, 161, 386
NlaIV	GGNNCC	3 cut(s)	133, 449, 544
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	3 cut(s)	209, 378, 599
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	216
PciI	ACATGT	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	605
PkrI	GCNGC	3 cut(s)	235, 699, 708
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	771
PscI	ACATGT	1 cut(s)	382
Psp1406I	AACGTT	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	3 cut(s)	133, 449, 544
PspPI	GGNCC	2 cut(s)	448, 542
PstNI	CAGNNNCTG	2 cut(s)	239, 571
PsyI	GACNNNGTC	1 cut(s)	605
RsaI	GTAC	2 cut(s)	398, 493
RsaNI	GTAC	2 cut(s)	397, 492
RseI	CAYNNNNRTG	2 cut(s)	216, 387
SaqAI	TTAA	2 cut(s)	306, 764
SatI	GCNGC	3 cut(s)	234, 698, 707
Sau3AI	GATC	2 cut(s)	105, 461
Sau96I	GGNCC	2 cut(s)	448, 542
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	2 cut(s)	216, 387
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	6 cut(s)	364, 482, 509, 616, 690, 729
SsiI	CCGC	2 cut(s)	110, 584
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	4 cut(s)	28, 265, 378, 498
TaiI	ACGT	3 cut(s)	45, 336, 773
TaqI	TCGA	2 cut(s)	104, 276
TasI	AATT	6 cut(s)	364, 482, 509, 616, 690, 729
TatI	WGTACW	2 cut(s)	396, 491
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	306, 764
Tru9I	TTAA	2 cut(s)	306, 764
TseFI	GTSAC	3 cut(s)	209, 378, 599
TseI	GCWGC	3 cut(s)	233, 697, 706
Tsp45I	GTSAC	3 cut(s)	209, 378, 599
TspDTI	ATGAA	3 cut(s)	702, 723, 727
Tth111I	GACNNNGTC	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	3 cut(s)	509, 616, 729
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.