AT2G25890

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007663
Physical Location & Seq
Forward (+)
11037303 .. 11038179
877 bp
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UTR
Exon/CDS
Intron
AT2G25890.1

Sequence Viewer

Length: 450 bp
ATGGCGGATCATCAACAACATCAGCAACAACAACAACCAATAATGAGGAGTCTCCATGAATCATCACCATCGACTCGGCAGATAGTGAGATTCGTAACGGCAGCTACGATCGGCCTATCACTCCTCGTGCTCTCAGGACTAACACTAACCGGAACGGTGATCGGTTTGATCGTAGCGACGCCGTTGATGGTTCTGTTCAGCCCGGTGTTGGTACCGGCAGTGATAACGATAGGGCTTTTGACGATGGGATTCCTATTCTCCGGTGGTTGTGGGGTGGCAGCAGCTACGGCGTTAACGTGGATTTATAAGTACGTTACCGGAAAACACCCGATGGGAGCGGATAAGGTGGATTACGCGAGGATGAGGATAGCGGAGAAAGCCAAAGAGTTGGGACATTATACGCACTCGCAGCCACAACAAACACACCAAACCACAACAACTACTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

149

Amino Acids

16.14

Weight (kDa)

9.52

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 26 - 135 1.1e-47 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
Acc65I GGTACC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 338
AccII CGCG 1 cut(s) 356
AciI CCGC 3 cut(s) 5, 338, 371
AclWI GGATC 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 2 cut(s) 213, 311
AfiI CCNNNNNNNGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 104, 284
AluI AGCT 2 cut(s) 104, 284
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 4 cut(s) 101, 278, 281, 409
Asp718I GGTACC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 57, 169
BanI GGYRCC 1 cut(s) 211
BauI CACGAG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 113, 290, 293, 421
BccI CCATC 4 cut(s) 76, 181, 238, 325
BceAI ACGGC 3 cut(s) 114, 166, 303
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 56
BisI GCNGC 4 cut(s) 102, 279, 282, 410
BlsI GCNGC 4 cut(s) 103, 280, 283, 411
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 179
BsaWI WCCGGW 3 cut(s) 149, 260, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 214
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 61, 113
BseXI GCAGC 4 cut(s) 113, 290, 293, 421
Bsh1236I CGCG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 5 cut(s) 150, 203, 215, 261, 318
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 4 cut(s) 7, 108, 159, 168
BspACI CCGC 3 cut(s) 5, 338, 371
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 146
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssMI GATC 4 cut(s) 7, 108, 159, 168
BssNI GRCGYC 1 cut(s) 179
BssSI CACGAG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 356
BstKTI GATC 4 cut(s) 10, 111, 162, 171
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 4 cut(s) 7, 108, 159, 168
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 287, 377, 409
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 4 cut(s) 113, 290, 293, 421
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 214
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 212, 310
CviAII CATG 1 cut(s) 56
CviJI RGCY 7 cut(s) 104, 114, 201, 235, 284, 380, 412
CviKI_1 RGCY 7 cut(s) 104, 114, 201, 235, 284, 380, 412
CviQI GTAC 2 cut(s) 212, 310
DdeI CTNAG 1 cut(s) 133
DpnI GATC 4 cut(s) 9, 110, 161, 170
DpnII GATC 4 cut(s) 7, 108, 159, 168
EciI GGCGGA 1 cut(s) 20
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 306, 399
FaqI GGGAC 1 cut(s) 405
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 4 cut(s) 102, 279, 282, 410
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 4 cut(s) 102, 279, 282, 410
GluI GCNGC 4 cut(s) 102, 279, 282, 410
HaeIII GGCC 1 cut(s) 114
HapII CCGG 5 cut(s) 150, 203, 215, 261, 318
HgaI GACGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 1 cut(s) 59
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 5 cut(s) 49, 59, 73, 90, 249
HpaI GTTAAC 1 cut(s) 294
HpaII CCGG 5 cut(s) 150, 203, 215, 261, 318
HphI GGTGA 2 cut(s) 57, 169
Hpy166II GTNNAC 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 296, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 377, 409
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 2 cut(s) 296, 312
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 1 cut(s) 59
KpnI GGTACC 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 4 cut(s) 7, 108, 159, 168
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 120, 163, 216, 228, 274, 331
Lsp1109I GCAGC 4 cut(s) 113, 290, 293, 421
MaeII ACGT 2 cut(s) 296, 312
MaeIII GTNAC 2 cut(s) 94, 313
MalI GATC 4 cut(s) 9, 110, 161, 170
MbiI CCGCTC 1 cut(s) 338
MboI GATC 4 cut(s) 7, 108, 159, 168
MhlI GDGCHC 1 cut(s) 132
MlyI GAGTC 2 cut(s) 58, 67
MnlI CCTC 4 cut(s) 39, 134, 351, 357
MseI TTAA 1 cut(s) 293
MspI CCGG 5 cut(s) 150, 203, 215, 261, 318
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 3 cut(s) 287, 377, 409
NciI CCSGG 1 cut(s) 203
NdeII GATC 4 cut(s) 7, 108, 159, 168
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 55
PcsI WCGNNNNNNNCGW 3 cut(s) 104, 168, 293
PfeI GAWTC 3 cut(s) 59, 90, 249
PkrI GCNGC 4 cut(s) 103, 280, 283, 411
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 2 cut(s) 57, 67
PpsI GAGTC 2 cut(s) 57, 67
PsiI TTATAA 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 213
PvuI CGATCG 1 cut(s) 111
RsaI GTAC 2 cut(s) 213, 311
RsaNI GTAC 2 cut(s) 212, 310
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 4 cut(s) 102, 279, 282, 410
Sau3AI GATC 4 cut(s) 7, 108, 159, 168
SchI GAGTC 2 cut(s) 58, 67
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 132
SetI ASST 5 cut(s) 106, 286, 299, 315, 348
SsiI CCGC 3 cut(s) 5, 338, 371
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 299, 315
TaqI TCGA 1 cut(s) 71
TfiI GAWTC 3 cut(s) 59, 90, 249
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 225
TseI GCWGC 4 cut(s) 101, 278, 281, 409
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.