FvH4_2g35151

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007663
Physical Location & Seq
Reverse (-)
25976124 .. 25976498
375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35151.t1

Sequence Viewer

Length: 375 bp
ATGATCAACACCATGCCATTCGCCTCTTCCCAGAAGCCCAATGAGCCATTGGCCTCACGCGACCAGACCAGCACTGCCAAGGTCTTGACCACAGGAGCAGTCGGTGCAACCTTCTTAGTCTTGTCAGGGTTAACTTTAACCGGCACGGTGATGGTGCTGATCTTCACCTCCCCGGTTGTAGTGCTGTTTAGTCCAATCCTAGTTCCGGTAGGGATAGTCCTCTTCCTTGCAGCATGTGGTTTCGTCTTCTCTGGCGGGTGTGCCGTGGCGGCGGTTACGGCACTGTCATGGTTGTTTAGATACGCATCTGATCACCTCGCTGCCAAGAGAAGGGCTCACGCATATGGGGGCTCTTTCGTGCAAATCGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

125

Amino Acids

12.88

Weight (kDa)

9.59

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 26 - 105 9.2e-27 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AciI CCGC 3 cut(s) 255, 269, 272
AfiI CCNNNNNNNGG 2 cut(s) 205, 330
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 230, 320
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 3 cut(s) 157, 160, 305
BanII GRGCYC 2 cut(s) 337, 353
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 242, 307
BccI CCATC 1 cut(s) 145
BceAI ACGGC 2 cut(s) 248, 294
BclI TGATCA 2 cut(s) 3, 310
BcnI CCSGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 3 cut(s) 231, 270, 321
BlsI GCNGC 3 cut(s) 232, 271, 322
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpuMI CCSGG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 78, 171, 264
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 330
Bse118I RCCGGY 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 304
BseDI CCNNGG 3 cut(s) 78, 171, 264
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 205, 330
BseXI GCAGC 2 cut(s) 242, 307
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 141, 173, 206
BslI CCNNNNNNNGG 2 cut(s) 205, 330
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 337, 353
Bsp143I GATC 3 cut(s) 3, 159, 310
BspACI CCGC 3 cut(s) 255, 269, 272
BspANI GGCC 1 cut(s) 53
BspFNI CGCG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 78, 171, 264
BssMI GATC 3 cut(s) 3, 159, 310
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 148, 285
Bst6I CTCTTC 2 cut(s) 31, 227
BstAPI GCANNNNNTGC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 6, 162, 313
BstMBI GATC 3 cut(s) 3, 159, 310
BstMWI GCNNNNNNNGC 4 cut(s) 43, 104, 269, 278
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 242, 307
BstV2I GAAGAC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 281
Cfr10I RCCGGY 1 cut(s) 140
CviAII CATG 3 cut(s) 13, 234, 288
CviJI RGCY 5 cut(s) 37, 46, 53, 335, 351
CviKI_1 RGCY 5 cut(s) 37, 46, 53, 335, 351
DdeI CTNAG 1 cut(s) 115
DpnI GATC 3 cut(s) 5, 161, 312
DpnII GATC 3 cut(s) 3, 159, 310
Eam1104I CTCTTC 2 cut(s) 31, 227
EarI CTCTTC 2 cut(s) 31, 227
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 337, 353
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 2 cut(s) 337, 353
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 16, 237, 291
FaiI YATR 6 cut(s) 14, 235, 289, 343, 345, 373
FatI CATG 3 cut(s) 12, 233, 287
FauI CCCGC 1 cut(s) 248
FauNDI CATATG 1 cut(s) 343
FbaI TGATCA 2 cut(s) 3, 310
Fnu4HI GCNGC 3 cut(s) 231, 270, 321
FriOI GRGCYC 2 cut(s) 337, 353
Fsp4HI GCNGC 3 cut(s) 231, 270, 321
FspBI CTAG 1 cut(s) 200
GluI GCNGC 3 cut(s) 231, 270, 321
HaeIII GGCC 1 cut(s) 53
HapII CCGG 3 cut(s) 141, 173, 206
Hin1II CATG 3 cut(s) 16, 237, 291
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HpaI GTTAAC 1 cut(s) 132
HpaII CCGG 3 cut(s) 141, 173, 206
HphI GGTGA 3 cut(s) 157, 160, 305
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 121, 324
HpyCH4III ACNGT 2 cut(s) 148, 285
HpyCH4V TGCA 3 cut(s) 107, 230, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 104, 269, 278
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 3 cut(s) 16, 237, 291
Ksp22I TGATCA 2 cut(s) 3, 310
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 3, 159, 310
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 9 cut(s) 44, 77, 78, 82, 111, 154, 186, 219, 237
Lsp1109I GCAGC 2 cut(s) 242, 307
LweI GCATC 1 cut(s) 314
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 274
MalI GATC 3 cut(s) 5, 161, 312
MboI GATC 3 cut(s) 3, 159, 310
MboII GAAGA 4 cut(s) 18, 154, 214, 238
MhlI GDGCHC 2 cut(s) 337, 353
MnlI CCTC 5 cut(s) 34, 64, 178, 230, 326
MseI TTAA 2 cut(s) 131, 137
MslI CAYNNNNRTG 3 cut(s) 149, 286, 342
MspI CCGG 3 cut(s) 141, 173, 206
MspR9I CCNGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 43, 104, 269, 278
NciI CCSGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 343
NdeII GATC 3 cut(s) 3, 159, 310
NlaIII CATG 3 cut(s) 16, 237, 291
NspI RCATGY 1 cut(s) 237
PkrI GCNGC 3 cut(s) 232, 271, 322
RseI CAYNNNNRTG 3 cut(s) 149, 286, 342
SaqAI TTAA 2 cut(s) 131, 137
SatI GCNGC 3 cut(s) 231, 270, 321
Sau3AI GATC 3 cut(s) 3, 159, 310
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 337, 353
SetI ASST 4 cut(s) 84, 113, 170, 318
SfaNI GCATC 1 cut(s) 314
SmiMI CAYNNNNRTG 3 cut(s) 149, 286, 342
SsiI CCGC 3 cut(s) 255, 269, 272
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 148, 285
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 131, 137
Tru9I TTAA 2 cut(s) 131, 137
TscAI CASTG 2 cut(s) 79, 288
TseI GCWGC 2 cut(s) 230, 320
TspRI CASTG 2 cut(s) 79, 288
XceI RCATGY 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.