Rw6G040500

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007663
Physical Location & Seq
Forward (+)
64284160 .. 64284633
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040500.1

Sequence Viewer

Length: 378 bp
ATGGCCACAGCCGACTTGCATCACAAGCATGACGTCGATCAGTATTCGTTACCGTCCTCACGGGGCCAGACTAGCATAACCCAGTTCTTAACCGCCGGCGCAATTGGCACCACGCTTTTAGGCTTGTCCGCGTTAACTTTAACCGGGACCGTGATGGCCCTGATCCTGGCCACCCCAGTTCTAGTGCTGTTTAGTCCGGTCCTAGTCCCGGCGGCAATAGTCGTGGTCCTAGTAGCTGCTGGTTTTGTTTTCTCCGGCGGGTGTGGCGTGGCTGCCATCGCGGCGCTGACGTGGTTGTACAAGTATGTATCCAACTCCGTCTCTACCAGGAGAAGGGATTACACTTATGGGGGGTCTTATGCTCAATTTGGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

125

Amino Acids

13.02

Weight (kDa)

8.89

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 26 - 107 9.7e-30 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 2 cut(s) 131, 281
AciI CCGC 5 cut(s) 93, 129, 212, 258, 281
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 2 cut(s) 3, 168
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 3 cut(s) 166, 208, 333
AjiI CACGTC 1 cut(s) 291
AjnI CCWGG 2 cut(s) 165, 326
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 157
AoxI GGCC 4 cut(s) 3, 64, 156, 168
ApeKI GCWGC 2 cut(s) 236, 272
AspLEI GCGC 2 cut(s) 101, 286
AspS9I GGNCC 5 cut(s) 64, 147, 157, 199, 226
AsuC2I CCSGG 2 cut(s) 145, 209
AvaII GGWCC 3 cut(s) 147, 199, 226
BalI TGGCCA 2 cut(s) 5, 170
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 223, 259
BccI CCATC 2 cut(s) 148, 284
BciT130I CCWGG 2 cut(s) 167, 328
BciVI GTATCC 1 cut(s) 319
BcnI CCSGG 2 cut(s) 145, 209
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 4 cut(s) 72, 182, 203, 230
BfoI RGCGCY 1 cut(s) 287
BfuI GTATCC 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 4 cut(s) 213, 237, 273, 282
BlsI GCNGC 4 cut(s) 214, 238, 274, 283
Bme1390I CCNGG 4 cut(s) 145, 167, 209, 328
Bme18I GGWCC 3 cut(s) 147, 199, 226
BmgBI CACGTC 1 cut(s) 291
BmgT120I GGNCC 5 cut(s) 64, 147, 157, 199, 226
BmiI GGNNCC 3 cut(s) 65, 109, 148
BmrFI CCNGG 4 cut(s) 145, 167, 209, 328
BmrI ACTGGG 2 cut(s) 76, 170
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 2 cut(s) 76, 170
BpuMI CCSGG 2 cut(s) 145, 209
BsaHI GRCGYC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 208, 333
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 82, 176
BseBI CCWGG 2 cut(s) 167, 328
BseLI CCNNNNNNNGG 3 cut(s) 166, 208, 333
BseNI ACTGG 2 cut(s) 82, 176
BseXI GCAGC 2 cut(s) 223, 259
Bsh1236I CGCG 2 cut(s) 131, 281
BshFI GGCC 4 cut(s) 5, 66, 158, 170
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 5 cut(s) 96, 144, 197, 209, 255
BslFI GGGAC 2 cut(s) 160, 191
BslI CCNNNNNNNGG 3 cut(s) 166, 208, 333
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 160, 191
BsnI GGCC 4 cut(s) 5, 66, 158, 170
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 37, 162
BspACI CCGC 5 cut(s) 93, 129, 212, 258, 281
BspANI GGCC 4 cut(s) 5, 66, 158, 170
BspFNI CGCG 2 cut(s) 131, 281
BspLI GGNNCC 3 cut(s) 65, 109, 148
BspPI GGATC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 2 cut(s) 82, 176
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 2 cut(s) 37, 162
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 167, 328
Bst4CI ACNGT 2 cut(s) 54, 151
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 97
BstFNI CGCG 2 cut(s) 131, 281
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 101, 286
BstKTI GATC 2 cut(s) 40, 165
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 37, 162
BstMWI GCNNNNNNNGC 6 cut(s) 25, 72, 105, 264, 278, 281
BstNI CCWGG 2 cut(s) 167, 328
BstSCI CCNGG 4 cut(s) 143, 165, 207, 326
BstUI CGCG 2 cut(s) 131, 281
BstV1I GCAGC 2 cut(s) 223, 259
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 4 cut(s) 5, 66, 158, 170
BtgZI GCGATG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 2 cut(s) 101, 286
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 5 cut(s) 64, 147, 157, 199, 226
Csp6I GTAC 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 1 cut(s) 29
CviJI RGCY 8 cut(s) 5, 11, 66, 123, 158, 170, 236, 272
CviKI_1 RGCY 8 cut(s) 5, 11, 66, 123, 158, 170, 236, 272
CviQI GTAC 1 cut(s) 298
DpnI GATC 2 cut(s) 39, 164
DpnII GATC 2 cut(s) 37, 162
EaeI YGGCCR 2 cut(s) 3, 168
Eco47I GGWCC 3 cut(s) 147, 199, 226
EcoRII CCWGG 2 cut(s) 165, 326
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 1 cut(s) 32
FaiI YATR 6 cut(s) 30, 77, 306, 348, 360, 376
FaqI GGGAC 2 cut(s) 160, 191
FatI CATG 1 cut(s) 28
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 213, 237, 273, 282
Fsp4HI GCNGC 4 cut(s) 213, 237, 273, 282
FspBI CTAG 4 cut(s) 72, 182, 203, 230
GlaI GCGC 2 cut(s) 100, 285
GluI GCNGC 4 cut(s) 213, 237, 273, 282
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 4 cut(s) 5, 66, 158, 170
HapII CCGG 5 cut(s) 96, 144, 197, 209, 255
HhaI GCGC 2 cut(s) 101, 286
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 2 cut(s) 99, 284
HinP1I GCGC 2 cut(s) 99, 284
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HpaI GTTAAC 1 cut(s) 135
HpaII CCGG 5 cut(s) 96, 144, 197, 209, 255
Hpy166II GTNNAC 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 54, 151
HpyCH4IV ACGT 2 cut(s) 33, 290
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 72, 105, 264, 278, 281
HpySE526I ACGT 2 cut(s) 33, 290
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 2 cut(s) 99, 284
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 37, 162
Lsp1109I GCAGC 2 cut(s) 223, 259
LweI GCATC 1 cut(s) 28
MaeI CTAG 4 cut(s) 72, 182, 203, 230
MaeII ACGT 2 cut(s) 33, 290
MaeIII GTNAC 1 cut(s) 48
MalI GATC 2 cut(s) 39, 164
MboI GATC 2 cut(s) 37, 162
MfeI CAATTG 1 cut(s) 102
MlsI TGGCCA 2 cut(s) 5, 170
MluCI AATT 2 cut(s) 102, 365
MluNI TGGCCA 2 cut(s) 5, 170
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 1 cut(s) 67
Mox20I TGGCCA 2 cut(s) 5, 170
MreI CGCCGGCG 1 cut(s) 95
MroNI GCCGGC 1 cut(s) 95
MscI TGGCCA 2 cut(s) 5, 170
MseI TTAA 3 cut(s) 89, 134, 140
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 2 cut(s) 5, 170
MspI CCGG 5 cut(s) 96, 144, 197, 209, 255
MspR9I CCNGG 4 cut(s) 145, 167, 209, 328
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 2 cut(s) 167, 328
MvnI CGCG 2 cut(s) 131, 281
MwoI GCNNNNNNNGC 6 cut(s) 25, 72, 105, 264, 278, 281
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 145, 209
NdeII GATC 2 cut(s) 37, 162
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 3 cut(s) 65, 109, 148
PdiI GCCGGC 1 cut(s) 97
PkrI GCNGC 4 cut(s) 214, 238, 274, 283
Psp6I CCWGG 2 cut(s) 165, 326
PspGI CCWGG 2 cut(s) 165, 326
PspN4I GGNNCC 3 cut(s) 65, 109, 148
PspPI GGNCC 5 cut(s) 64, 147, 157, 199, 226
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 3 cut(s) 89, 134, 140
SatI GCNGC 4 cut(s) 213, 237, 273, 282
Sau3AI GATC 2 cut(s) 37, 162
Sau96I GGNCC 5 cut(s) 64, 147, 157, 199, 226
ScrFI CCNGG 4 cut(s) 145, 167, 209, 328
SetI ASST 3 cut(s) 36, 238, 293
SfaNI GCATC 1 cut(s) 28
SgrAI CRCCGGYG 1 cut(s) 95
SinI GGWCC 3 cut(s) 147, 199, 226
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 2 cut(s) 102, 365
SsiI CCGC 5 cut(s) 93, 129, 212, 258, 281
SspMI CTAG 4 cut(s) 72, 182, 203, 230
StyD4I CCNGG 4 cut(s) 143, 165, 207, 326
TaaI ACNGT 2 cut(s) 54, 151
TaiI ACGT 2 cut(s) 36, 293
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 102, 365
TatI WGTACW 1 cut(s) 297
TauI GCSGC 2 cut(s) 215, 284
Tru1I TTAA 3 cut(s) 89, 134, 140
Tru9I TTAA 3 cut(s) 89, 134, 140
TseI GCWGC 2 cut(s) 236, 272
TspGWI ACGGA 1 cut(s) 307
VpaK11BI GGWCC 3 cut(s) 147, 199, 226
XspI CTAG 4 cut(s) 72, 182, 203, 230
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.