Rh6CG479200

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007663
Physical Location & Seq
Forward (+)
64683177 .. 64683683
507 bp
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UTR
Exon/CDS
Intron
Rh6CG479200.1

Sequence Viewer

Length: 507 bp
ATGCAACCCACCACCACCAATCGAGCCACACAAAACACGATAAGATCATCACCACCGACCGTTCTTCTCCTACAAATACGACTTGTTCGATTCCATGACTCTTCTTCATACTTTTCAGTCGCAGTAGCCATGATCAACATCAGGCCATTCGCCTCTTCCCAGAAGCCCAATGAGCCGGTGGCCTCACGCGACCGGACCAGCATTGCCAAGGTCTTGACAACTGGAGCAATCGGTGTCACTTTCTTAGTCTTGTCCGGGTTAACTTTAACCGGGACAGTGATGACCCTGATCTTGGCCAGCCCAGTTATAGTGCTGTTTAGTCCGGTCCTAGTCCCGGCTGGGATAGTCCTCTTCCTTGCAGCAAGTGGTTTGGTTTTCTCCGGCGGGTGTGGCGTGGTGGCGATTATGGCACTATCATGGTTGATTAAATACGCATCTGACTACCTCGCTGCCAAGAAAAGGGCTGACGCATATGGGGGCTCTAATTTCATGCAAATTGGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

168

Amino Acids

17.75

Weight (kDa)

10.28

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 68 - 147 2.2e-27 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 292, 334, 459
AoxI GGCC 3 cut(s) 143, 180, 294
ApeKI GCWGC 2 cut(s) 359, 449
AspS9I GGNCC 2 cut(s) 195, 325
AsuC2I CCSGG 3 cut(s) 256, 271, 335
AsuHPI GGTGA 1 cut(s) 42
AvaII GGWCC 2 cut(s) 195, 325
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 371, 436
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 3 cut(s) 256, 271, 335
BfaI CTAG 1 cut(s) 329
BisI GCNGC 2 cut(s) 360, 450
BlsI GCNGC 2 cut(s) 361, 451
Bme1390I CCNGG 3 cut(s) 256, 271, 335
Bme18I GGWCC 2 cut(s) 195, 325
BmgT120I GGNCC 2 cut(s) 195, 325
BmrFI CCNGG 3 cut(s) 256, 271, 335
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 443
BmuI ACTGGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 243
BpuMI CCSGG 3 cut(s) 256, 271, 335
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 2 cut(s) 192, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 334, 459
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 226, 302
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 3 cut(s) 292, 334, 459
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 226, 302
BseXI GCAGC 2 cut(s) 371, 436
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 2 cut(s) 60, 193
BshFI GGCC 3 cut(s) 145, 182, 296
BsiEI CGRYCG 2 cut(s) 60, 193
BsiSI CCGG 7 cut(s) 176, 193, 255, 270, 323, 335, 381
BslFI GGGAC 2 cut(s) 286, 317
BslI CCNNNNNNNGG 3 cut(s) 292, 334, 459
BsmFI GGGAC 2 cut(s) 286, 317
BsnI GGCC 3 cut(s) 145, 182, 296
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 3 cut(s) 44, 132, 288
BspACI CCGC 1 cut(s) 384
BspANI GGCC 3 cut(s) 145, 182, 296
BspFNI CGCG 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 2 cut(s) 226, 302
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 44, 132, 288
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 61, 277
Bst6I CTCTTC 3 cut(s) 106, 160, 356
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 189
BstKTI GATC 3 cut(s) 47, 135, 291
BstMBI GATC 3 cut(s) 44, 132, 288
BstMCI CGRYCG 2 cut(s) 60, 193
BstMWI GCNNNNNNNGC 3 cut(s) 172, 390, 407
BstSCI CCNGG 3 cut(s) 254, 269, 333
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 371, 436
BsuRI GGCC 3 cut(s) 145, 182, 296
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 195, 325
CseI GACGC 1 cut(s) 476
CviAII CATG 4 cut(s) 95, 130, 417, 490
DdeI CTNAG 1 cut(s) 244
DpnI GATC 3 cut(s) 46, 134, 290
DpnII GATC 3 cut(s) 44, 132, 288
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 3 cut(s) 106, 160, 356
EarI CTCTTC 3 cut(s) 106, 160, 356
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 482
Eco47I GGWCC 2 cut(s) 195, 325
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 4 cut(s) 98, 133, 420, 493
FaqI GGGAC 2 cut(s) 286, 317
FatI CATG 4 cut(s) 94, 129, 416, 489
FauI CCCGC 1 cut(s) 377
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 360, 450
FriOI GRGCYC 1 cut(s) 482
Fsp4HI GCNGC 2 cut(s) 360, 450
FspBI CTAG 1 cut(s) 329
GluI GCNGC 2 cut(s) 360, 450
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 3 cut(s) 145, 182, 296
HapII CCGG 7 cut(s) 176, 193, 255, 270, 323, 335, 381
HgaI GACGC 1 cut(s) 476
Hin1II CATG 4 cut(s) 98, 133, 420, 493
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 2 cut(s) 90, 98
HpaI GTTAAC 1 cut(s) 261
HpaII CCGG 7 cut(s) 176, 193, 255, 270, 323, 335, 381
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 61, 277
HpyCH4V TGCA 3 cut(s) 4, 359, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 390, 407
HpyF3I CTNAG 1 cut(s) 244
Hsp92II CATG 4 cut(s) 98, 133, 420, 493
Ksp22I TGATCA 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 44, 132, 288
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 2 cut(s) 371, 436
LweI GCATC 1 cut(s) 443
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 46, 134, 290
MboI GATC 3 cut(s) 44, 132, 288
MboII GAAGA 5 cut(s) 56, 93, 96, 147, 343
MhlI GDGCHC 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 2 cut(s) 484, 495
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 163, 193, 359, 455
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 3 cut(s) 260, 266, 426
MslI CAYNNNNRTG 1 cut(s) 415
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 7 cut(s) 176, 193, 255, 270, 323, 335, 381
MspR9I CCNGG 3 cut(s) 256, 271, 335
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 172, 390, 407
NciI CCSGG 3 cut(s) 256, 271, 335
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 44, 132, 288
NlaIII CATG 4 cut(s) 98, 133, 420, 493
NmuCI GTSAC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 361, 451
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 195, 325
RseI CAYNNNNRTG 1 cut(s) 415
SaqAI TTAA 3 cut(s) 260, 266, 426
SatI GCNGC 2 cut(s) 360, 450
Sau3AI GATC 3 cut(s) 44, 132, 288
Sau96I GGNCC 2 cut(s) 195, 325
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 3 cut(s) 256, 271, 335
SduI GDGCHC 1 cut(s) 482
SetI ASST 2 cut(s) 213, 447
SfaNI GCATC 1 cut(s) 443
SinI GGWCC 2 cut(s) 195, 325
SmiMI CAYNNNNRTG 1 cut(s) 415
Sse9I AATT 2 cut(s) 484, 495
SsiI CCGC 1 cut(s) 384
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 3 cut(s) 254, 269, 333
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 61, 277
TaqI TCGA 2 cut(s) 22, 88
TasI AATT 2 cut(s) 484, 495
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 3 cut(s) 260, 266, 426
Tru9I TTAA 3 cut(s) 260, 266, 426
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 359, 449
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 96, 478
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 2 cut(s) 195, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.