Rh6BG436000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007663
Physical Location & Seq
Reverse (-)
65572245 .. 65572565
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG436000.1

Sequence Viewer

Length: 321 bp
ATGCAACCCACAACCACCAATCGAGCCACACAAAACACGATAAGATCATCACCACCGACCGTTCTTCTCCTACAAATACGACTTGTTCGATTCCATGACTCTTCTTCATACTTTTCAGTCGCAGTAGCCATGATCAACATCAGGCCATTCGCCTCTTCCCAGAAGCCCAATGAGCCGGTGGCCTCACGCGACCGGACCAGCACTGCCAAGGTCTTGACAACTGGAGCAATCGGTGTCACTTTCTTAGTCTTGTCCGGGTTAACTTTAACCGGGACAGTGATGACCCTGATCTTGGCCAGCCCAGTTTATAGTGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.35

Weight (kDa)

11.31

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 292
AoxI GGCC 3 cut(s) 143, 180, 294
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 2 cut(s) 256, 271
AsuHPI GGTGA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 296
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 2 cut(s) 256, 271
Bme1390I CCNGG 2 cut(s) 256, 271
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 256, 271
BmrI ACTGGG 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 256, 271
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 226, 302
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 292
BseNI ACTGG 2 cut(s) 226, 302
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 2 cut(s) 60, 193
BshFI GGCC 3 cut(s) 145, 182, 296
BsiEI CGRYCG 2 cut(s) 60, 193
BsiSI CCGG 4 cut(s) 176, 193, 255, 270
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 3 cut(s) 145, 182, 296
Bsp143I GATC 3 cut(s) 44, 132, 288
BspANI GGCC 3 cut(s) 145, 182, 296
BspFNI CGCG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 2 cut(s) 226, 302
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 44, 132, 288
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 61, 277
Bst6I CTCTTC 2 cut(s) 106, 160
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 189
BstKTI GATC 3 cut(s) 47, 135, 291
BstMBI GATC 3 cut(s) 44, 132, 288
BstMCI CGRYCG 2 cut(s) 60, 193
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 254, 269
BstUI CGCG 1 cut(s) 189
BsuRI GGCC 3 cut(s) 145, 182, 296
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 282
Cac8I GCNNGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 2 cut(s) 95, 130
CviJI RGCY 8 cut(s) 26, 128, 145, 166, 175, 182, 296, 300
CviKI_1 RGCY 8 cut(s) 26, 128, 145, 166, 175, 182, 296, 300
DdeI CTNAG 1 cut(s) 244
DpnI GATC 3 cut(s) 46, 134, 290
DpnII GATC 3 cut(s) 44, 132, 288
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 106, 160
EarI CTCTTC 2 cut(s) 106, 160
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 98, 133
FaiI YATR 4 cut(s) 96, 109, 131, 309
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 94, 129
FbaI TGATCA 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 3 cut(s) 145, 182, 296
HapII CCGG 4 cut(s) 176, 193, 255, 270
Hin1II CATG 2 cut(s) 98, 133
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 2 cut(s) 90, 98
HpaI GTTAAC 1 cut(s) 261
HpaII CCGG 4 cut(s) 176, 193, 255, 270
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 61, 277
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 244
Hsp92II CATG 2 cut(s) 98, 133
Ksp22I TGATCA 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 44, 132, 288
LmnI GCTCC 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 46, 134, 290
MboI GATC 3 cut(s) 44, 132, 288
MboII GAAGA 4 cut(s) 56, 93, 96, 147
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 163, 193
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 260, 266
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 4 cut(s) 176, 193, 255, 270
MspR9I CCNGG 2 cut(s) 256, 271
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 172
NciI CCSGG 2 cut(s) 256, 271
NdeII GATC 3 cut(s) 44, 132, 288
NlaIII CATG 2 cut(s) 98, 133
NmuCI GTSAC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PfeI GAWTC 1 cut(s) 90
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 260, 266
Sau3AI GATC 3 cut(s) 44, 132, 288
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 256, 271
SetI ASST 1 cut(s) 213
SinI GGWCC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 254, 269
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 61, 277
TaqI TCGA 2 cut(s) 22, 88
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 260, 266
Tru9I TTAA 2 cut(s) 260, 266
TscAI CASTG 2 cut(s) 208, 282
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 2 cut(s) 208, 282
VpaK11BI GGWCC 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.