Rh6CG479100

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007663
Physical Location & Seq
Forward (+)
64678725 .. 64679993
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG479100.1

Sequence Viewer

Length: 543 bp
ATGGCCACAGCCGACTTTCATCACAAGCACGACGTCGATCAGTACTCGTTTCCGTCCTCACGGGGCCAGACTAGCATAACCAGGTTCTTAACCGCCGGCGCAATTGGCACCACGCTTTTAGGCTTGTCCGCGTTAACTTTAACCGGGACCGTGATGGCCCTGATCCTGGCCACCCCAGTTCTAGTGCTGTTTAGTCCGGTCCTAGTCCCGGCGGCAATAGTCGTGGTCCTAGTAGCAGCTGGTTTTGTTTTCTCCGGCGGGTGTGGCGTGGCTGCCATCGCGGCGCTGACGTGGTTGTACAACTTGAATACCAAACTAAAGAAAAAGAAGAAGCATAACCTGACACAATATGCCAATTTATCTACAGGAAGAAAAACAAACAATGTTCGTGCTAAAACAAGTATAGATCAGAATCATCAGATGATAAAGGATATACCAAAAAAAGAAATAACCTATGTCAAGACTCAAGAACATGAGGAACAGCTAAAGCAACACGGCCATGAACTCTCAGTCGATACATGCAAGTATACCTGGATTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

180

Amino Acids

19.66

Weight (kDa)

9.57

Isoelectric Point (pI)

20.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 26 - 133 3.6e-31 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 527
AccII CGCG 2 cut(s) 131, 281
AciI CCGC 5 cut(s) 93, 129, 212, 258, 281
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 3 cut(s) 3, 168, 496
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 2 cut(s) 44, 299
AfiI CCNNNNNNNGG 2 cut(s) 166, 208
AgsI TTSAA 1 cut(s) 307
AjiI CACGTC 1 cut(s) 291
AjnI CCWGG 3 cut(s) 80, 165, 530
AluBI AGCT 2 cut(s) 239, 484
AluI AGCT 2 cut(s) 239, 484
AlwI GGATC 1 cut(s) 157
AoxI GGCC 5 cut(s) 3, 64, 156, 168, 496
ApeKI GCWGC 2 cut(s) 236, 272
AspLEI GCGC 2 cut(s) 101, 286
AspS9I GGNCC 5 cut(s) 64, 147, 157, 199, 226
AsuC2I CCSGG 2 cut(s) 145, 209
AvaII GGWCC 3 cut(s) 147, 199, 226
BalI TGGCCA 2 cut(s) 5, 170
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 248, 259
BccI CCATC 2 cut(s) 148, 284
BceAI ACGGC 1 cut(s) 511
BciT130I CCWGG 3 cut(s) 82, 167, 532
BcnI CCSGG 2 cut(s) 145, 209
BfaI CTAG 4 cut(s) 72, 182, 203, 230
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 4 cut(s) 213, 237, 273, 282
BlsI GCNGC 4 cut(s) 214, 238, 274, 283
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 5 cut(s) 82, 145, 167, 209, 532
Bme18I GGWCC 3 cut(s) 147, 199, 226
BmgBI CACGTC 1 cut(s) 291
BmgT120I GGNCC 5 cut(s) 64, 147, 157, 199, 226
BmiI GGNNCC 3 cut(s) 65, 109, 148
BmrFI CCNGG 5 cut(s) 82, 145, 167, 209, 532
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 2 cut(s) 145, 209
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 208
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 3 cut(s) 82, 167, 532
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 166, 208
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 248, 259
Bsh1236I CGCG 2 cut(s) 131, 281
BshFI GGCC 5 cut(s) 5, 66, 158, 170, 498
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 5 cut(s) 96, 144, 197, 209, 255
BslFI GGGAC 2 cut(s) 160, 191
BslI CCNNNNNNNGG 2 cut(s) 166, 208
BsmFI GGGAC 2 cut(s) 160, 191
BsnI GGCC 5 cut(s) 5, 66, 158, 170, 498
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 3 cut(s) 37, 162, 406
BspACI CCGC 5 cut(s) 93, 129, 212, 258, 281
BspANI GGCC 5 cut(s) 5, 66, 158, 170, 498
BspCNI CTCAG 1 cut(s) 521
BspFNI CGCG 2 cut(s) 131, 281
BspLI GGNNCC 3 cut(s) 65, 109, 148
BspPI GGATC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 3 cut(s) 37, 162, 406
BssNAI GTATAC 1 cut(s) 528
BssNI GRCGYC 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 528
Bst2UI CCWGG 3 cut(s) 82, 167, 532
Bst4CI ACNGT 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 508
BstFNI CGCG 2 cut(s) 131, 281
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 101, 286
BstKTI GATC 3 cut(s) 40, 165, 409
BstMBI GATC 3 cut(s) 37, 162, 406
BstMWI GCNNNNNNNGC 5 cut(s) 72, 105, 264, 278, 281
BstNI CCWGG 3 cut(s) 82, 167, 532
BstNSI RCATGY 1 cut(s) 522
BstSCI CCNGG 5 cut(s) 80, 143, 165, 207, 530
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 2 cut(s) 131, 281
BstV1I GCAGC 2 cut(s) 248, 259
BstZ17I GTATAC 1 cut(s) 528
BsuRI GGCC 5 cut(s) 5, 66, 158, 170, 498
BtgZI GCGATG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 2 cut(s) 101, 286
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 5 cut(s) 64, 147, 157, 199, 226
CsiI ACCWGGT 1 cut(s) 80
Csp6I GTAC 2 cut(s) 43, 298
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 3 cut(s) 473, 500, 519
CviQI GTAC 2 cut(s) 43, 298
DdeI CTNAG 1 cut(s) 508
DpnI GATC 3 cut(s) 39, 164, 408
DpnII GATC 3 cut(s) 37, 162, 406
EaeI YGGCCR 3 cut(s) 3, 168, 496
Eco47I GGWCC 3 cut(s) 147, 199, 226
EcoRII CCWGG 3 cut(s) 80, 165, 530
FaeI CATG 3 cut(s) 476, 503, 522
FaqI GGGAC 2 cut(s) 160, 191
FatI CATG 3 cut(s) 472, 499, 518
FauI CCCGC 1 cut(s) 251
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 4 cut(s) 213, 237, 273, 282
Fsp4HI GCNGC 4 cut(s) 213, 237, 273, 282
FspBI CTAG 4 cut(s) 72, 182, 203, 230
GlaI GCGC 2 cut(s) 100, 285
GluI GCNGC 4 cut(s) 213, 237, 273, 282
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 5 cut(s) 5, 66, 158, 170, 498
HapII CCGG 5 cut(s) 96, 144, 197, 209, 255
HhaI GCGC 2 cut(s) 101, 286
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 476, 503, 522
Hin6I GCGC 2 cut(s) 99, 284
HinP1I GCGC 2 cut(s) 99, 284
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 2 cut(s) 412, 463
HpaI GTTAAC 1 cut(s) 135
HpaII CCGG 5 cut(s) 96, 144, 197, 209, 255
Hpy166II GTNNAC 2 cut(s) 135, 528
Hpy188I TCNGA 2 cut(s) 411, 420
Hpy188III TCNNGA 2 cut(s) 460, 467
Hpy8I GTNNAC 2 cut(s) 135, 528
Hpy99I CGWCG 2 cut(s) 35, 38
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 33, 290
HpyCH4V TGCA 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 105, 264, 278, 281
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 2 cut(s) 33, 290
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 476, 503, 522
HspAI GCGC 2 cut(s) 99, 284
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 37, 162, 406
Lsp1109I GCAGC 2 cut(s) 248, 259
MabI ACCWGGT 1 cut(s) 80
MaeI CTAG 4 cut(s) 72, 182, 203, 230
MaeII ACGT 2 cut(s) 33, 290
MalI GATC 3 cut(s) 39, 164, 408
MboI GATC 3 cut(s) 37, 162, 406
MboII GAAGA 2 cut(s) 340, 381
MfeI CAATTG 1 cut(s) 102
MlsI TGGCCA 2 cut(s) 5, 170
MluCI AATT 2 cut(s) 102, 355
MluNI TGGCCA 2 cut(s) 5, 170
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 2 cut(s) 67, 469
Mox20I TGGCCA 2 cut(s) 5, 170
MreI CGCCGGCG 1 cut(s) 95
MroNI GCCGGC 1 cut(s) 95
MscI TGGCCA 2 cut(s) 5, 170
MseI TTAA 3 cut(s) 89, 134, 140
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 2 cut(s) 5, 170
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 5 cut(s) 96, 144, 197, 209, 255
MspR9I CCNGG 5 cut(s) 82, 145, 167, 209, 532
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 3 cut(s) 82, 167, 532
MvnI CGCG 2 cut(s) 131, 281
MwoI GCNNNNNNNGC 5 cut(s) 72, 105, 264, 278, 281
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 145, 209
NdeII GATC 3 cut(s) 37, 162, 406
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 3 cut(s) 476, 503, 522
NlaIV GGNNCC 3 cut(s) 65, 109, 148
NspI RCATGY 1 cut(s) 522
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 4 cut(s) 214, 238, 274, 283
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp6I CCWGG 3 cut(s) 80, 165, 530
PspGI CCWGG 3 cut(s) 80, 165, 530
PspN4I GGNNCC 3 cut(s) 65, 109, 148
PspPI GGNCC 5 cut(s) 64, 147, 157, 199, 226
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 44, 299
RsaNI GTAC 2 cut(s) 43, 298
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 3 cut(s) 89, 134, 140
SatI GCNGC 4 cut(s) 213, 237, 273, 282
Sau3AI GATC 3 cut(s) 37, 162, 406
Sau96I GGNCC 5 cut(s) 64, 147, 157, 199, 226
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 5 cut(s) 82, 145, 167, 209, 532
SetI ASST 8 cut(s) 36, 86, 241, 293, 342, 455, 486, 533
SexAI ACCWGGT 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 363
SgrAI CRCCGGYG 1 cut(s) 95
SinI GGWCC 3 cut(s) 147, 199, 226
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 2 cut(s) 102, 355
SsiI CCGC 5 cut(s) 93, 129, 212, 258, 281
SspMI CTAG 4 cut(s) 72, 182, 203, 230
StyD4I CCNGG 5 cut(s) 80, 143, 165, 207, 530
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 2 cut(s) 36, 293
TaqI TCGA 2 cut(s) 36, 513
TasI AATT 2 cut(s) 102, 355
TatI WGTACW 2 cut(s) 42, 297
TauI GCSGC 2 cut(s) 215, 284
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 3 cut(s) 89, 134, 140
Tru9I TTAA 3 cut(s) 89, 134, 140
TseI GCWGC 2 cut(s) 236, 272
TspDTI ATGAA 2 cut(s) 8, 516
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 3 cut(s) 147, 199, 226
XceI RCATGY 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 527
XspI CTAG 4 cut(s) 72, 182, 203, 230
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.