FvH4_3g15571

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007663
Physical Location & Seq
Reverse (-)
9765105 .. 9766210
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15571.t1

Sequence Viewer

Length: 585 bp
ATGCTGGACAAAAGACTATTGAGCTTATATGATTTGGTTCTACTGCTGGCATGTATGGACATTGTAGCTAGCAAGCTTATTATTAAGACCTTCATAGTTCACTTAGAGATCGATCACTCCTTTGAAATCAATCTGTTGTTCGATATATACTTCGATATATACTCACTTTCCGATCACAGTATCAAACTATCAATGGCATCAGTGGACTTTCATCAGAAACCGGACGACGAACGGTACTACTACTCCGCTCAGAAGTCCTCAGGCGGCAGTAGCTACGGTAGTGCAGCCAAGTTCTTGGTCGCAGGGGCAGTTGGCAGCACGCTCTTTGTCTTGTCCGGTTTAACTTTAACCGCCACGGTGATAGCCCTGATCATGGCCACCCCAGTTGTAGTCCTGTTTAGCCCTATCCTAGTCCCAGCAGGATTGGCCTTGTTCCTCGCAGCAACAGGTTTAGTTTTCTCCGGCGGGTGCGGCGTGGCGGCGGTAACGGCGTTTGTTAGGTTGTATAAGTACATATCTGGTTACGCAGCGGCCCAGAAAACGAATTACGGGTACGGCCAAAACTTTTACCACCCAATTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

195

Amino Acids

21.03

Weight (kDa)

6.95

Isoelectric Point (pI)

24.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 96 - 180 1.2e-26 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 8 cut(s) 246, 264, 351, 465, 471, 479, 482, 530
AcoI YGGCCR 2 cut(s) 375, 556
AfaI GTAC 3 cut(s) 236, 512, 554
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 4 cut(s) 24, 68, 76, 273
AluI AGCT 4 cut(s) 24, 68, 76, 273
AoxI GGCC 4 cut(s) 375, 426, 531, 556
ApeKI GCWGC 4 cut(s) 284, 315, 440, 527
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 370
AsuNHI GCTAGC 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 259
BalI TGGCCA 1 cut(s) 377
BbvI GCAGC 4 cut(s) 296, 327, 452, 539
BceAI ACGGC 2 cut(s) 504, 571
BclI TGATCA 1 cut(s) 369
BfaI CTAG 2 cut(s) 69, 410
BisI GCNGC 8 cut(s) 265, 285, 316, 441, 472, 480, 528, 531
BlsI GCNGC 8 cut(s) 266, 286, 317, 442, 473, 481, 529, 532
BmgT120I GGNCC 1 cut(s) 532
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 206
BmtI GCTAGC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 377
Bsa29I ATCGAT 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 2 cut(s) 220, 335
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 263, 273
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 4 cut(s) 296, 327, 452, 539
BseYI CCCAGC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 4 cut(s) 377, 428, 533, 558
BshVI ATCGAT 1 cut(s) 111
BsiSI CCGG 3 cut(s) 221, 336, 462
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 4 cut(s) 377, 428, 533, 558
Bsp143I GATC 4 cut(s) 108, 112, 172, 369
BspACI CCGC 8 cut(s) 246, 264, 351, 465, 471, 479, 482, 530
BspANI GGCC 4 cut(s) 377, 428, 533, 558
BspCNI CTCAG 2 cut(s) 262, 272
BspDI ATCGAT 1 cut(s) 111
BspOI GCTAGC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 4 cut(s) 108, 112, 172, 369
Bst4CI ACNGT 4 cut(s) 179, 234, 278, 358
BstC8I GCNNGC 4 cut(s) 48, 70, 74, 320
BstDEI CTNAG 3 cut(s) 103, 249, 259
BstDSI CCRYGG 1 cut(s) 354
BstKTI GATC 4 cut(s) 111, 115, 175, 372
BstMBI GATC 4 cut(s) 108, 112, 172, 369
BstMWI GCNNNNNNNGC 4 cut(s) 270, 425, 471, 488
BstNSI RCATGY 1 cut(s) 54
BstV1I GCAGC 4 cut(s) 296, 327, 452, 539
BstXI CCANNNNNNTGG 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 259
BsuRI GGCC 4 cut(s) 377, 428, 533, 558
BsuTUI ATCGAT 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 48, 70, 74, 320
Cfr13I GGNCC 1 cut(s) 532
ClaI ATCGAT 1 cut(s) 111
Csp6I GTAC 3 cut(s) 235, 511, 553
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 2 cut(s) 51, 373
CviQI GTAC 3 cut(s) 235, 511, 553
DdeI CTNAG 3 cut(s) 103, 249, 259
DpnI GATC 4 cut(s) 110, 114, 174, 371
DpnII GATC 4 cut(s) 108, 112, 172, 369
EaeI YGGCCR 2 cut(s) 375, 556
Eco81I CCTNAGG 1 cut(s) 259
FaeI CATG 2 cut(s) 54, 376
FaqI GGGAC 1 cut(s) 398
FatI CATG 2 cut(s) 50, 372
FauI CCCGC 1 cut(s) 458
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 8 cut(s) 265, 285, 316, 441, 472, 480, 528, 531
Fsp4HI GCNGC 8 cut(s) 265, 285, 316, 441, 472, 480, 528, 531
FspBI CTAG 2 cut(s) 69, 410
GluI GCNGC 8 cut(s) 265, 285, 316, 441, 472, 480, 528, 531
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 4 cut(s) 377, 428, 533, 558
HapII CCGG 3 cut(s) 221, 336, 462
Hin1II CATG 2 cut(s) 54, 376
HindIII AAGCTT 1 cut(s) 74
HpaII CCGG 3 cut(s) 221, 336, 462
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 100, 205
Hpy188I TCNGA 3 cut(s) 172, 216, 252
Hpy8I GTNNAC 2 cut(s) 100, 205
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 4 cut(s) 179, 234, 278, 358
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 425, 471, 488
HpyF3I CTNAG 3 cut(s) 103, 249, 259
Hsp92II CATG 2 cut(s) 54, 376
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 4 cut(s) 108, 112, 172, 369
Lsp1109I GCAGC 4 cut(s) 296, 327, 452, 539
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 69, 410
MaeIII GTNAC 2 cut(s) 484, 521
MalI GATC 4 cut(s) 110, 114, 174, 371
MbiI CCGCTC 1 cut(s) 248
MboI GATC 4 cut(s) 108, 112, 172, 369
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 544, 576
MluNI TGGCCA 1 cut(s) 377
MnlI CCTC 2 cut(s) 268, 446
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 4 cut(s) 84, 341, 347, 579
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 3 cut(s) 221, 336, 462
MwoI GCNNNNNNNGC 4 cut(s) 270, 425, 471, 488
NdeII GATC 4 cut(s) 108, 112, 172, 369
NheI GCTAGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 54, 376
NspI RCATGY 1 cut(s) 54
PkrI GCNGC 8 cut(s) 266, 286, 317, 442, 473, 481, 529, 532
PspFI CCCAGC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 532
RsaI GTAC 3 cut(s) 236, 512, 554
RsaNI GTAC 3 cut(s) 235, 511, 553
SaqAI TTAA 4 cut(s) 84, 341, 347, 579
SatI GCNGC 8 cut(s) 265, 285, 316, 441, 472, 480, 528, 531
Sau3AI GATC 4 cut(s) 108, 112, 172, 369
Sau96I GGNCC 1 cut(s) 532
SetI ASST 7 cut(s) 26, 70, 78, 92, 275, 451, 503
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 2 cut(s) 544, 576
SsiI CCGC 8 cut(s) 246, 264, 351, 465, 471, 479, 482, 530
SspMI CTAG 2 cut(s) 69, 410
TaaI ACNGT 4 cut(s) 179, 234, 278, 358
TaqI TCGA 3 cut(s) 111, 141, 153
TasI AATT 2 cut(s) 544, 576
TatI WGTACW 1 cut(s) 510
TauI GCSGC 4 cut(s) 267, 474, 482, 533
Tru1I TTAA 4 cut(s) 84, 341, 347, 579
Tru9I TTAA 4 cut(s) 84, 341, 347, 579
TscAI CASTG 1 cut(s) 207
TseI GCWGC 4 cut(s) 284, 315, 440, 527
TspDTI ATGAA 2 cut(s) 82, 200
TspRI CASTG 1 cut(s) 207
XceI RCATGY 1 cut(s) 54
XspI CTAG 2 cut(s) 69, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.