AT2G26240

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010179
Physical Location & Seq
Reverse (-)
11167248 .. 11168672
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26240.1

Sequence Viewer

Length: 327 bp
ATGGACTCATCTTTGTCGCAGAAGTTCACTCTTGCTTATGCTTCTCTCCTCGGAGTTGGTGGGTTGATGGGTTACCTGAAACGCGGAAGCAAAATATCACTTGTCGCAGGAGGAGGTTCAGCTGCGTTGTTCTATTATGTATACACGGAGCTCCCAGGAAATCCAGTCTTAGCATCCTCCATTGGCATTGTGGGGTCGGCGGCACTGACAGGGATGATGGGATCACGTTACCTAAGGACGAGGAAAGTGGTACCGGCTGGACTTGTGTCGGTGGTGTCACTCGTCATGACTGGAGCTTACTTGCACGGCCTCATTCGCTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

108

Amino Acids

11.11

Weight (kDa)

10.07

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 9 - 100 1e-21 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26240
fragaria_vesca FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica Prupe.7G189100_v2.0.a1
pyrus_communis pycom02g08390 pycom15g20080
rosa_chinensis RchiOBHm_Chr2g0096571
rosa_laevigata RLG00000016650
rosa_multiflora Rmu_sc0004096.1_g000004
rosa_roxburghii Rroxscaffold_2G00145530
rosa_rugosa Rorug02G0058700
rosa_samantha Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana Rw2G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 84, 200
AclWI GGATC 1 cut(s) 229
AfaI GTAC 1 cut(s) 252
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 122, 151, 296
AluI AGCT 3 cut(s) 122, 151, 296
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 233
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 61, 211
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 156
BisI GCNGC 2 cut(s) 123, 201
BlsI GCNGC 2 cut(s) 124, 202
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 182
BoxI GACNNNNGTC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 49, 154
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 164, 295
Bse21I CCTNAGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 49, 154
BseGI GGATG 2 cut(s) 173, 219
BseNI ACTGG 2 cut(s) 164, 295
BseRI GAGGAG 2 cut(s) 38, 126
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 2 cut(s) 84, 200
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 2 cut(s) 164, 295
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 49, 154
BssMI GATC 1 cut(s) 221
BssNAI GTATAC 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 169, 233
BstEII GGTNACC 1 cut(s) 71
BstF5I GGATG 2 cut(s) 173, 219
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 156
BstPAI GACNNNNGTC 1 cut(s) 265
BstPI GGTNACC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 109
BstZ17I GTATAC 1 cut(s) 142
Bsu36I CCTNAGG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 173, 219
BtsIMutI CAGTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 253
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 122, 151, 257, 296, 309
CviKI_1 RGCY 5 cut(s) 122, 151, 257, 296, 309
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 169, 233
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 39, 138, 142, 287
FatI CATG 1 cut(s) 285
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 123, 201
FokI GGATG 2 cut(s) 160, 226
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 123, 201
GluI GCNGC 2 cut(s) 123, 201
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 254
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 27, 142
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 27, 142
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 2 cut(s) 169, 233
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 289
KpnI GGTACC 1 cut(s) 254
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 3 cut(s) 148, 156, 293
LpnPI CCDG 9 cut(s) 89, 93, 141, 168, 177, 195, 243, 267, 276
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 182
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 3 cut(s) 71, 227, 276
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 153
MnlI CCTC 6 cut(s) 59, 104, 107, 187, 234, 320
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 1 cut(s) 221
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 276
PagI TCATGA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 124, 202
PshAI GACNNNNGTC 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SacI GAGCTC 1 cut(s) 153
SatI GCNGC 2 cut(s) 123, 201
Sau3AI GATC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 78, 118, 124, 153, 229, 234, 298
SfaNI GCATC 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SsiI CCGC 2 cut(s) 84, 200
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 154
TaiI ACGT 1 cut(s) 229
TauI GCSGC 1 cut(s) 203
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.