Rorug02G0058700

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010179
Physical Location & Seq
Reverse (-)
4533407 .. 4533799
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0058700.1

Sequence Viewer

Length: 393 bp
ATGGTCGGAGACATAGAGAAGATGATCGCGGTGGGCCTGGTCTGGGGCGCCACCAACGCGCTAATGCGACGTGGCGCTCTCCTATGGGACGAAGCCCTCAAGTCGTCCACCTCATCCTCCCAGCCACAGCCGATCACTTCCCTCAAGAAATGGCTGAAGCTCCTCTCAATCTGGCAGTACACCATTCCCTTCTCCGTCAACCTCTCCGCCTCCGCCACTTTCTTCGCCATTCTCAGCCACACCCCCATCTCGCTCGCCGTCCCCGTCACCAATGCGACGACGTTTGCTGCCACCGCCGTTTTCGGAATTCTGTTGGGAGAACAGACCCACCTGGGCCTCGCTTTGTTCGGTACGGGTTTGATTGTTCTGGGCATTTGGCTTTGTATAACATAG

Protein Analysis

130

Amino Acids

13.9

Weight (kDa)

8.98

Isoelectric Point (pI)

28.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 129 2.1e-26 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26240
fragaria_vesca FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica Prupe.7G189100_v2.0.a1
pyrus_communis pycom02g08390 pycom15g20080
rosa_chinensis RchiOBHm_Chr2g0096571
rosa_laevigata RLG00000016650
rosa_multiflora Rmu_sc0004096.1_g000004
rosa_roxburghii Rroxscaffold_2G00145530
rosa_rugosa Rorug02G0058700
rosa_samantha Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana Rw2G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 29, 59
AciI CCGC 4 cut(s) 29, 207, 213, 294
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 179, 352
AfiI CCNNNNNNNGG 1 cut(s) 43
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 2 cut(s) 36, 330
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 2 cut(s) 34, 334
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 306
AspLEI GCGC 3 cut(s) 50, 61, 77
AspS9I GGNCC 2 cut(s) 34, 334
AsuHPI GGTGA 1 cut(s) 259
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 274
BccI CCATC 1 cut(s) 254
BceAI ACGGC 2 cut(s) 242, 281
BciT130I CCWGG 2 cut(s) 38, 332
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 2 cut(s) 51, 78
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 38, 332
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 34, 334
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 38, 332
BpuEI CTTGAG 2 cut(s) 83, 128
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 38, 332
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 2 cut(s) 29, 59
BshFI GGCC 2 cut(s) 36, 336
BshNI GGYRCC 1 cut(s) 47
BslFI GGGAC 2 cut(s) 101, 245
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 101, 245
BsnI GGCC 2 cut(s) 36, 336
Bsp143I GATC 2 cut(s) 24, 132
BspACI CCGC 4 cut(s) 29, 207, 213, 294
BspANI GGCC 2 cut(s) 36, 336
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 2 cut(s) 29, 59
BspLI GGNNCC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 24, 132
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 38, 332
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 29, 59
BstH2I RGCGCY 2 cut(s) 51, 78
BstHHI GCGC 3 cut(s) 50, 61, 77
BstKTI GATC 2 cut(s) 27, 135
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 24, 132
BstMWI GCNNNNNNNGC 2 cut(s) 56, 293
BstNI CCWGG 2 cut(s) 38, 332
BstSCI CCNGG 2 cut(s) 36, 330
BstUI CGCG 2 cut(s) 29, 59
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 2 cut(s) 36, 336
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 3 cut(s) 50, 61, 77
Cfr13I GGNCC 2 cut(s) 34, 334
Csp6I GTAC 2 cut(s) 178, 351
CviJI RGCY 9 cut(s) 36, 95, 124, 130, 154, 160, 237, 336, 379
CviKI_1 RGCY 9 cut(s) 36, 95, 124, 130, 154, 160, 237, 336, 379
CviQI GTAC 2 cut(s) 178, 351
DdeI CTNAG 1 cut(s) 233
DinI GGCGCC 1 cut(s) 49
DpnI GATC 2 cut(s) 26, 134
DpnII GATC 2 cut(s) 24, 132
EciI GGCGGA 2 cut(s) 196, 202
Eco57I CTGAAG 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 36, 330
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaiI YATR 4 cut(s) 14, 85, 386, 391
FaqI GGGAC 2 cut(s) 101, 245
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 288
GlaI GCGC 3 cut(s) 49, 60, 76
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 2 cut(s) 51, 78
HaeIII GGCC 2 cut(s) 36, 336
HhaI GCGC 3 cut(s) 50, 61, 77
Hin1I GRCGYC 1 cut(s) 48
Hin6I GCGC 3 cut(s) 48, 59, 75
HinP1I GCGC 3 cut(s) 48, 59, 75
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 3 cut(s) 108, 180, 199
Hpy188I TCNGA 2 cut(s) 8, 305
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 3 cut(s) 108, 180, 199
Hpy99I CGWCG 3 cut(s) 72, 280, 283
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 70, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 293
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 70, 281
Hsp92I GRCGYC 1 cut(s) 48
HspAI GCGC 3 cut(s) 48, 59, 75
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 24, 132
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 8 cut(s) 23, 28, 50, 134, 157, 317, 344, 353
Lsp1109I GCAGC 1 cut(s) 274
MaeII ACGT 2 cut(s) 70, 281
MaeIII GTNAC 1 cut(s) 265
MalI GATC 2 cut(s) 26, 134
MboI GATC 2 cut(s) 24, 132
MboII GAAGA 2 cut(s) 31, 214
MluCI AATT 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 48
MnlI CCTC 8 cut(s) 107, 121, 127, 152, 173, 212, 220, 347
MspR9I CCNGG 2 cut(s) 38, 332
MvaI CCWGG 2 cut(s) 38, 332
MvnI CGCG 2 cut(s) 29, 59
MwoI GCNNNNNNNGC 2 cut(s) 56, 293
NarI GGCGCC 1 cut(s) 48
NdeII GATC 2 cut(s) 24, 132
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PkrI GCNGC 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 36, 330
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 36, 330
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 34, 334
RsaI GTAC 2 cut(s) 179, 352
RsaNI GTAC 2 cut(s) 178, 351
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 24, 132
Sau96I GGNCC 2 cut(s) 34, 334
ScrFI CCNGG 2 cut(s) 38, 332
SetI ASST 6 cut(s) 73, 113, 162, 204, 284, 333
SfoI GGCGCC 1 cut(s) 49
SmlI CTYRAG 2 cut(s) 98, 143
SmoI CTYRAG 2 cut(s) 98, 143
Sse9I AATT 1 cut(s) 306
SsiI CCGC 4 cut(s) 29, 207, 213, 294
SspDI GGCGCC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 36, 330
TaiI ACGT 2 cut(s) 73, 284
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 177
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 184
XapI RAATTY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.