pycom02g08390

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010179
Physical Location & Seq
Reverse (-)
5860310 .. 5862009
1700 bp
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UTR
Exon/CDS
Intron
pycom02g08390.1

Sequence Viewer

Length: 282 bp
ATGTCGATGTCTCAGAAACTAACCCTAGGATATGCTATTCTTGTTGGAGTGGGTGGCCTTATGGGCTTTTTGAAGAGTGGCAGCCAGAAGTCACTGTTGGCAGGGGGAATATCATCCGCCTTACTGTTTTATGTTTCTACTGAGCTTCCCGTAAGACCAGTTTTTGCATCATCTATCGGGCTTGGGTTGTCTGCTGCCCTCCTGGCTGTGATGGGATCGATCGTTTCAAGAAGTCAGGGAAGATCTTTCCAGCCGGCATCGTCTCTCTTGTGTCGCTTGTAA

Protein Analysis

94

Amino Acids

9.51

Weight (kDa)

10.55

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 8 - 87 1e-12 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26240
fragaria_vesca FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica Prupe.7G189100_v2.0.a1
pyrus_communis pycom02g08390 pycom15g20080
rosa_chinensis RchiOBHm_Chr2g0096571
rosa_laevigata RLG00000016650
rosa_multiflora Rmu_sc0004096.1_g000004
rosa_roxburghii Rroxscaffold_2G00145530
rosa_rugosa Rorug02G0058700
rosa_samantha Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana Rw2G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 223
AgsI TTSAA 2 cut(s) 73, 228
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 15, 267
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 81, 194
AspA2I CCTAGG 1 cut(s) 25
AvrII CCTAGG 1 cut(s) 25
BbvI GCAGC 2 cut(s) 93, 181
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 15, 267
BfaI CTAG 1 cut(s) 26
BglI GCCNNNNNGGC 2 cut(s) 63, 203
BglII AGATCT 1 cut(s) 242
BisI GCNGC 2 cut(s) 82, 195
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 2 cut(s) 83, 196
Bme1390I CCNGG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 176, 266
Bsa29I ATCGAT 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 113
BseMII CTCAG 2 cut(s) 26, 132
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 93, 181
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 15, 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 215, 219, 242
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 25, 133
BspDI ATCGAT 1 cut(s) 218
BspPI GGATC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 215, 219, 242
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 96, 126
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 12, 141
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 3 cut(s) 218, 222, 245
BstMAI GTCTC 2 cut(s) 15, 267
BstMBI GATC 3 cut(s) 215, 219, 242
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 63, 203
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 93, 181
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 218
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 218
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 255
Cfr10I RCCGGY 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 218
CviJI RGCY 7 cut(s) 57, 66, 84, 145, 181, 206, 253
CviKI_1 RGCY 7 cut(s) 57, 66, 84, 145, 181, 206, 253
DdeI CTNAG 2 cut(s) 12, 141
DpnI GATC 3 cut(s) 217, 221, 244
DpnII GATC 3 cut(s) 215, 219, 242
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 267
FaiI YATR 3 cut(s) 33, 62, 132
Fnu4HI GCNGC 2 cut(s) 82, 195
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 82, 195
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 82, 195
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 254
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 228
HpyCH4III ACNGT 2 cut(s) 96, 126
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 203
HpyF3I CTNAG 2 cut(s) 12, 141
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 3 cut(s) 215, 219, 242
LpnPI CCDG 8 cut(s) 87, 98, 171, 188, 215, 221, 263, 267
Lsp1109I GCAGC 2 cut(s) 93, 181
LweI GCATC 2 cut(s) 176, 266
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 90
MalI GATC 3 cut(s) 217, 221, 244
MboI GATC 3 cut(s) 215, 219, 242
MboII GAAGA 2 cut(s) 85, 252
MflI RGATCY 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 253
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 63, 203
NaeI GCCGGC 1 cut(s) 255
NdeII GATC 3 cut(s) 215, 219, 242
NgoMIV GCCGGC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 255
PkrI GCNGC 2 cut(s) 83, 196
Ple19I CGATCG 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 242
PvuI CGATCG 1 cut(s) 222
SatI GCNGC 2 cut(s) 82, 195
Sau3AI GATC 3 cut(s) 215, 219, 242
ScrFI CCNGG 1 cut(s) 203
SetI ASST 1 cut(s) 147
SfaNI GCATC 2 cut(s) 176, 266
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 96, 126
TaqI TCGA 2 cut(s) 5, 218
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 2 cut(s) 81, 194
Tsp45I GTSAC 1 cut(s) 90
TspRI CASTG 1 cut(s) 99
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.