Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004096.1

Orthogroup ID

OG0010179

Physical Location & Seq

Genomic Coordinates Forward (+)

12847 .. 15794

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004096.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggcagagttaagcgtttcttctcagtcctcctttctcctgctccgacccaaaacaggaattctccacaacccccgaaccgccatttctctttctctaagcggcgccggagctccgtgcctgcgattcgcggcttcctccaatcaagctcgtagcttgaggctcggggtggtctccgatcctacagctcccagcttattcaccgttgattcgggcactaagggtattgtgatcgagcccgagatcggcggcggcggtggcggcgatggaggcgattctggcgggagaggcggcggaggaggaggaggagggggggatcatagtgacggtagaggggaggagggagctgacgacagtagcaagaagaaagggatgtcgatgtctcagaaactaaccctagcttatgctctgcttgttggagtgggtggcgttatgggctttttgaagagcggcagcaacaagtcactgttggcaggaggaatatcagcatccttactctatcttgtttatactgagcttcctaaaagaacagtttttgcatcatctcttgggcttgggctgtctgctgcccttctggttgtgatgggctctcgtttcaagaggtcagggaagatatttccagccggcgttgtatctctcgtgtcactcataatgactggtggctactttcatggaattctacgtggcatgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

231

Amino Acids

23.12

Weight (kDa)

9.83

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26240
fragaria_vesca	FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica	MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica	Prupe.7G189100_v2.0.a1
pyrus_communis	pycom02g08390 pycom15g20080
rosa_chinensis	RchiOBHm_Chr2g0096571
rosa_laevigata	RLG00000016650
rosa_multiflora	Rmu_sc0004096.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145530
rosa_rugosa	Rorug02G0058700
rosa_samantha	Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana	Rw2G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	450
AccII	CGCG	1 cut(s)	131
AclWI	GGATC	2 cut(s)	173, 324
AcsI	RAATTY	2 cut(s)	60, 675
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	56, 245
AgsI	TTSAA	2 cut(s)	445, 598
AluBI	AGCT	8 cut(s)	113, 149, 156, 188, 195, 347, 401, 517
AluI	AGCT	8 cut(s)	113, 149, 156, 188, 195, 347, 401, 517
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	178, 387
AlwI	GGATC	2 cut(s)	173, 324
Ama87I	CYCGRG	2 cut(s)	164, 239
ApeKI	GCWGC	2 cut(s)	453, 566
ApoI	RAATTY	2 cut(s)	60, 675
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	2 cut(s)	164, 239
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	3 cut(s)	115, 240, 590
BauI	CACGAG	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	465, 553
BccI	CCATC	2 cut(s)	260, 577
BcoDI	GTCTC	2 cut(s)	178, 387
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	9 cut(s)	103, 132, 250, 253, 262, 292, 451, 454, 567
BlsI	GCNGC	9 cut(s)	104, 133, 251, 254, 263, 293, 452, 455, 568
BmeT110I	CYCGRG	2 cut(s)	164, 239
BmiI	GGNNCC	1 cut(s)	106
BmsI	GCATC	2 cut(s)	497, 548
BpuEI	CTTGAG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	683
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 245
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	661
BseGI	GGATG	2 cut(s)	378, 488
BseLI	CCNNNNNNNGG	2 cut(s)	56, 245
BseMII	CTCAG	3 cut(s)	38, 398, 504
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	5 cut(s)	312, 315, 318, 321, 353
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	465, 553
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	115
BsiHKCI	CYCGRG	2 cut(s)	164, 239
BsiSI	CCGG	2 cut(s)	108, 624
BslI	CCNNNNNNNGG	2 cut(s)	56, 245
BsmAI	GTCTC	2 cut(s)	178, 387
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	2 cut(s)	164, 239
Bsp1286I	GDGCHC	4 cut(s)	115, 218, 240, 590
Bsp143I	GATC	4 cut(s)	178, 231, 243, 316
BspCNI	CTCAG	3 cut(s)	37, 397, 505
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	173, 324
BspQI	GCTCTTC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	661
BssAI	RCCGGY	1 cut(s)	623
BssMI	GATC	4 cut(s)	178, 231, 243, 316
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	638
Bst4CI	ACNGT	5 cut(s)	205, 329, 356, 468, 532
Bst6I	CTCTTC	1 cut(s)	440
BstACI	GRCGYC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	683
BstC8I	GCNNGC	3 cut(s)	122, 625, 689
BstDEI	CTNAG	5 cut(s)	24, 98, 219, 384, 513
BstF5I	GGATG	2 cut(s)	378, 488
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	4 cut(s)	181, 234, 246, 319
BstMAI	GTCTC	2 cut(s)	178, 387
BstMBI	GATC	4 cut(s)	178, 231, 243, 316
BstMWI	GCNNNNNNNGC	6 cut(s)	258, 261, 270, 279, 288, 435
BstNSI	RCATGY	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	465, 553
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	378, 488
BtsIMutI	CAGTG	2 cut(s)	464, 691
Cac8I	GCNNGC	3 cut(s)	122, 625, 689
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	623
CviAII	CATG	2 cut(s)	671, 688
DdeI	CTNAG	5 cut(s)	24, 98, 219, 384, 513
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	4 cut(s)	180, 233, 245, 318
DpnII	GATC	4 cut(s)	178, 231, 243, 316
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	113
Eco24I	GRGCYC	3 cut(s)	115, 240, 590
Eco31I	GGTCTC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	113
Eco88I	CYCGRG	2 cut(s)	164, 239
EcoICRI	GAGCTC	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	60, 675
EcoT38I	GRGCYC	3 cut(s)	115, 240, 590
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaeI	CATG	2 cut(s)	674, 691
FaiI	YATR	7 cut(s)	321, 405, 434, 510, 650, 672, 689
FalI	AAGNNNNNCTT	1 cut(s)	36
FatI	CATG	2 cut(s)	670, 687
FauI	CCCGC	1 cut(s)	275
Fnu4HI	GCNGC	9 cut(s)	103, 132, 250, 253, 262, 292, 451, 454, 567
FokI	GGATG	2 cut(s)	385, 475
FriOI	GRGCYC	3 cut(s)	115, 240, 590
Fsp4HI	GCNGC	9 cut(s)	103, 132, 250, 253, 262, 292, 451, 454, 567
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	9 cut(s)	103, 132, 250, 253, 262, 292, 451, 454, 567
GsaI	CCCAGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	2 cut(s)	108, 624
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	674, 691
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	126, 209, 275
HpaII	CCGG	2 cut(s)	108, 624
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	47, 178, 387
Hpy188III	TCNNGA	1 cut(s)	598
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	5 cut(s)	205, 329, 356, 468, 532
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	2 cut(s)	539, 691
HpyF10VI	GCNNNNNNNGC	6 cut(s)	258, 261, 270, 279, 288, 435
HpyF3I	CTNAG	5 cut(s)	24, 98, 219, 384, 513
HpySE526I	ACGT	1 cut(s)	682
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	674, 691
HspAI	GCGC	1 cut(s)	105
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	1 cut(s)	623
KroNI	GCCGGC	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	178, 231, 243, 316
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	5 cut(s)	48, 110, 118, 193, 344
Lsp1109I	GCAGC	2 cut(s)	465, 553
LweI	GCATC	2 cut(s)	497, 548
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	3 cut(s)	323, 462, 642
MalI	GATC	4 cut(s)	180, 233, 245, 318
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	4 cut(s)	178, 231, 243, 316
MboII	GAAGA	4 cut(s)	12, 376, 457, 622
MhlI	GDGCHC	4 cut(s)	115, 218, 240, 590
MluCI	AATT	2 cut(s)	60, 675
Mly113I	GGCGCC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	70, 397
MroNI	GCCGGC	1 cut(s)	623
MseI	TTAA	1 cut(s)	11
MspI	CCGG	2 cut(s)	108, 624
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	6 cut(s)	258, 261, 270, 279, 288, 435
NaeI	GCCGGC	1 cut(s)	625
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	4 cut(s)	178, 231, 243, 316
NgoMIV	GCCGGC	1 cut(s)	623
NlaIII	CATG	2 cut(s)	674, 691
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	3 cut(s)	323, 462, 642
NspI	RCATGY	1 cut(s)	691
PaeI	GCATGC	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	440
PdiI	GCCGGC	1 cut(s)	625
PfeI	GAWTC	3 cut(s)	126, 209, 275
PkrI	GCNGC	9 cut(s)	104, 133, 251, 254, 263, 293, 452, 455, 568
PluTI	GGCGCC	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	9 cut(s)	103, 132, 250, 253, 262, 292, 451, 454, 567
Sau3AI	GATC	4 cut(s)	178, 231, 243, 316
SduI	GDGCHC	4 cut(s)	115, 218, 240, 590
SfaNI	GCATC	2 cut(s)	497, 548
SfcI	CTRYAG	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SphI	GCATGC	1 cut(s)	691
Sse9I	AATT	2 cut(s)	60, 675
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	115
TaaI	ACNGT	5 cut(s)	205, 329, 356, 468, 532
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	2 cut(s)	234, 377
TasI	AATT	2 cut(s)	60, 675
TauI	GCSGC	7 cut(s)	105, 134, 252, 255, 264, 294, 453
TfiI	GAWTC	3 cut(s)	126, 209, 275
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	323, 462, 642
TseI	GCWGC	2 cut(s)	453, 566
Tsp45I	GTSAC	3 cut(s)	323, 462, 642
TspDTI	ATGAA	1 cut(s)	659
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	471
XapI	RAATTY	2 cut(s)	60, 675
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.