Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010179

Physical Location & Seq

Genomic Coordinates Forward (+)

18151423 .. 18153866

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G189100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAGACTTGTGCGTTTCTCAGTCCTCGCTTGTTCTACGCCCCAAAATTGGAGCTTTACACAACCTAAACACCTCCATTTCTCCAGCCCAACGCCTGCAACACAACAATCTCAGCTATCGGGGATTTGGGGCTTCCTCTGGTAACGCTCTTTTGTTGAGGCACGCATCAATTCAGAAGCTTGGGGTTGTCTCTGACACCAAATCTTCCACTATATTCACTGTTGACTCGGGGATCAAGGATATCGGCATCGAACCAGCTACCGGCGGCGGAGGCGGTGGTGGTGACTTTGGCGGTAGAGGCGGCGGCGGCGGAGGCGGTGGAGGTGATAATAGTGACGATAAAGGCGAGGGAGAGGAGGGACCGGAAGAGAAGAGAGAGAAGAAAGGGATGTCAATGTCTCAGAAACTAACTCTAGGATATGCTGCTCTTGTTGGAGTGGGTGGCCTCATGGGCTTCTTGAAGAGTGGCAGCCAGAAGTCACTGTTGGCAGGGGGATTATCAGCGGCCTTACTCTTTTATGTTTCTACTGAGCTTCCCGTAAGACCGGTTTTTGCATCATCTATTGGGCTTGGGTTGTCTGCTGCCCTTCTGGGGGTGATGGGCTCTCGCTTCAAGAAGTCAGGGAAGGTATTTCCAGCCGGCGTTGTATCTCTTGTGTCACTTGTAATGACCGGTGGCTACTTACATGGAATTCTACGTGGTATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

238

Amino Acids

23.91

Weight (kDa)

9.6

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26240
fragaria_vesca	FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica	MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica	Prupe.7G189100_v2.0.a1
pyrus_communis	pycom02g08390 pycom15g20080
rosa_chinensis	RchiOBHm_Chr2g0096571
rosa_laevigata	RLG00000016650
rosa_multiflora	Rmu_sc0004096.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145530
rosa_rugosa	Rorug02G0058700
rosa_samantha	Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana	Rw2G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	693
AfiI	CCNNNNNNNGG	4 cut(s)	50, 263, 594, 595
AgeI	ACCGGT	2 cut(s)	547, 674
AgsI	TTSAA	2 cut(s)	463, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	5 cut(s)	56, 117, 181, 260, 535
AluI	AGCT	5 cut(s)	56, 117, 181, 260, 535
Alw26I	GTCTC	2 cut(s)	196, 405
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	445, 507
ApeKI	GCWGC	3 cut(s)	425, 471, 584
ApoI	RAATTY	1 cut(s)	693
AsiGI	ACCGGT	2 cut(s)	547, 674
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	296, 338, 610
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	412, 483, 571
BccI	CCATC	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	196, 405
BfaI	CTAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	453
BisI	GCNGC	8 cut(s)	268, 304, 307, 310, 426, 472, 507, 585
BlsI	GCNGC	8 cut(s)	269, 305, 308, 311, 427, 473, 508, 586
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	3 cut(s)	176, 258, 566
BpmI	CTGGAG	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	701
BsaWI	WCCGGW	3 cut(s)	364, 547, 674
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 263, 594, 595
Bse118I	RCCGGY	4 cut(s)	263, 547, 641, 674
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	4 cut(s)	50, 263, 594, 595
BseMII	CTCAG	4 cut(s)	35, 127, 416, 522
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	412, 483, 571
BshFI	GGCC	2 cut(s)	447, 509
BshTI	ACCGGT	2 cut(s)	547, 674
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	5 cut(s)	264, 365, 548, 642, 675
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	4 cut(s)	50, 263, 594, 595
BsmAI	GTCTC	2 cut(s)	196, 405
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	447, 509
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	447, 509
BspCNI	CTCAG	4 cut(s)	34, 126, 415, 523
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	242
BsrFI	RCCGGY	4 cut(s)	263, 547, 641, 674
BssAI	RCCGGY	4 cut(s)	263, 547, 641, 674
BssMI	GATC	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	223, 486
Bst6I	CTCTTC	3 cut(s)	363, 368, 458
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	3 cut(s)	98, 165, 643
BstDEI	CTNAG	4 cut(s)	21, 113, 402, 531
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	196, 405
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 300, 309, 315, 453
BstV1I	GCAGC	3 cut(s)	412, 483, 571
BsuRI	GGCC	2 cut(s)	447, 509
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	219, 482, 709
Cac8I	GCNNGC	3 cut(s)	98, 165, 643
Cfr10I	RCCGGY	4 cut(s)	263, 547, 641, 674
Cfr13I	GGNCC	1 cut(s)	362
CspAI	ACCGGT	2 cut(s)	547, 674
CviAII	CATG	2 cut(s)	451, 689
DdeI	CTNAG	4 cut(s)	21, 113, 402, 531
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	363, 368, 458
EarI	CTCTTC	3 cut(s)	363, 368, 458
EciI	GGCGGA	2 cut(s)	285, 327
Eco24I	GRGCYC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	693
EcoRV	GATATC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	608
FaeI	CATG	2 cut(s)	454, 692
FaiI	YATR	6 cut(s)	215, 423, 452, 522, 690, 707
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	2 cut(s)	450, 688
Fnu4HI	GCNGC	8 cut(s)	268, 304, 307, 310, 426, 472, 507, 585
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	8 cut(s)	268, 304, 307, 310, 426, 472, 507, 585
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	8 cut(s)	268, 304, 307, 310, 426, 472, 507, 585
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	447, 509
HapII	CCGG	5 cut(s)	264, 365, 548, 642, 675
Hin1II	CATG	2 cut(s)	454, 692
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	5 cut(s)	264, 365, 548, 642, 675
HphI	GGTGA	3 cut(s)	296, 338, 610
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	177, 196, 405
Hpy188III	TCNNGA	2 cut(s)	460, 616
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	599, 622
HpyCH4III	ACNGT	2 cut(s)	223, 486
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	3 cut(s)	100, 557, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 300, 309, 315, 453
HpyF3I	CTNAG	4 cut(s)	21, 113, 402, 531
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	2 cut(s)	454, 692
KroI	GCCGGC	1 cut(s)	641
KroNI	GCCGGC	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	3 cut(s)	412, 483, 571
LweI	GCATC	3 cut(s)	176, 258, 566
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	5 cut(s)	143, 284, 335, 480, 660
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	5 cut(s)	198, 380, 385, 394, 475
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	3 cut(s)	48, 171, 693
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	415
MroNI	GCCGGC	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	5 cut(s)	264, 365, 548, 642, 675
MwoI	GCNNNNNNNGC	5 cut(s)	273, 300, 309, 315, 453
NaeI	GCCGGC	1 cut(s)	643
NdeII	GATC	1 cut(s)	234
NgoMIV	GCCGGC	1 cut(s)	641
NlaIII	CATG	2 cut(s)	454, 692
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	4 cut(s)	284, 335, 480, 660
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	643
PinAI	ACCGGT	2 cut(s)	547, 674
PkrI	GCNGC	8 cut(s)	269, 305, 308, 311, 427, 473, 508, 586
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	701
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	362
SatI	GCNGC	8 cut(s)	268, 304, 307, 310, 426, 472, 507, 585
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	3 cut(s)	176, 258, 566
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	3 cut(s)	48, 171, 693
SspMI	CTAG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	223, 486
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	48, 171, 693
TauI	GCSGC	5 cut(s)	270, 306, 309, 312, 509
TscAI	CASTG	2 cut(s)	226, 489
TseFI	GTSAC	4 cut(s)	284, 335, 480, 660
TseI	GCWGC	3 cut(s)	425, 471, 584
Tsp45I	GTSAC	4 cut(s)	284, 335, 480, 660
TspRI	CASTG	2 cut(s)	226, 489
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	693
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.