Rh2DG108900

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010179
Physical Location & Seq
Reverse (-)
8954925 .. 8958440
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG108900.1

Sequence Viewer

Length: 567 bp
ATGGCAGAGTTAAGCGTTTCTTCTCAGTCCTCCTTTCTCCTCCTCCGACCCAAAACCGGAATTCTCCACAACCCCCGAACCGCCATTTCTCTTTCTCTAAGCGGCGCCGGAGCTCCGTGCCTGCGATTCGCGGCTTCCTCCAATCAAGCTCGTAGCTTGAGGCTCGGGGTGGTCTCCGATCCTACAGCTCCCAGCTTATTCACCGTTGATTCGGGCACTAAGGGTATTGTGATCGAGCCCGAGATCGGCGGCAGCGGCGGCGGCGACGGAGGCGATTCTGGCGGGAGAGGCGGCGGCGGCGGAGGAGGAGGAGGAGGGGATCATAGTGACGGTAGAGGCGAGGAGGGAGCTGACGATAGTAGCAAGAAGAAAGGGATGTCGATGTCTCAAAAACTAACCCTAGCTTATGCTCTGCTTGTTGGAGTGGGTGGTGTTATGGGCTTTTTGAAGAGCGGCAGCAACAAGTCACTGTTGGCAGGAGGAATATCAGCATCCTTACTCTATCTTGTTTATACTGAGCTTCCTAAAAGAACAGTTTTTGCATCATCTCTTGGGCTTGGTAAGTGA

Protein Analysis

188

Amino Acids

18.57

Weight (kDa)

9.33

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 133 - 173 4.7e-08 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26240
fragaria_vesca FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica Prupe.7G189100_v2.0.a1
pyrus_communis pycom02g08390 pycom15g20080
rosa_chinensis RchiOBHm_Chr2g0096571
rosa_laevigata RLG00000016650
rosa_multiflora Rmu_sc0004096.1_g000004
rosa_roxburghii Rroxscaffold_2G00145530
rosa_rugosa Rorug02G0058700
rosa_samantha Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana Rw2G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 453
AccII CGCG 1 cut(s) 131
AclWI GGATC 2 cut(s) 173, 327
AcsI RAATTY 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 56, 245
AgsI TTSAA 1 cut(s) 448
AluBI AGCT 8 cut(s) 113, 149, 156, 188, 195, 350, 404, 520
AluI AGCT 8 cut(s) 113, 149, 156, 188, 195, 350, 404, 520
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 178, 390
AlwI GGATC 2 cut(s) 173, 327
Ama87I CYCGRG 2 cut(s) 164, 239
ApeKI GCWGC 2 cut(s) 252, 456
ApoI RAATTY 1 cut(s) 60
AspLEI GCGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 2 cut(s) 164, 239
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 115, 240
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 264, 468
BcoDI GTCTC 2 cut(s) 178, 390
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 108
BmeT110I CYCGRG 2 cut(s) 164, 239
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 2 cut(s) 500, 551
BpuEI CTTGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 245
BseGI GGATG 2 cut(s) 381, 491
BseLI CCNNNNNNNGG 2 cut(s) 56, 245
BseMII CTCAG 2 cut(s) 38, 507
BseRI GAGGAG 7 cut(s) 29, 32, 318, 321, 324, 327, 356
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 2 cut(s) 264, 468
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 164, 239
BsiSI CCGG 2 cut(s) 57, 108
BslI CCNNNNNNNGG 2 cut(s) 56, 245
BsmAI GTCTC 2 cut(s) 178, 390
Bso31I GGTCTC 1 cut(s) 178
BsoBI CYCGRG 2 cut(s) 164, 239
Bsp1286I GDGCHC 3 cut(s) 115, 218, 240
Bsp143I GATC 4 cut(s) 178, 231, 243, 319
BspCNI CTCAG 2 cut(s) 37, 508
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 2 cut(s) 173, 327
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 453
BssMI GATC 4 cut(s) 178, 231, 243, 319
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 4 cut(s) 205, 332, 471, 535
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 24, 98, 219, 516
BstF5I GGATG 2 cut(s) 381, 491
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 4 cut(s) 181, 234, 246, 322
BstMAI GTCTC 2 cut(s) 178, 390
BstMBI GATC 4 cut(s) 178, 231, 243, 319
BstMWI GCNNNNNNNGC 7 cut(s) 255, 258, 261, 270, 279, 288, 297
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 264, 468
BtsCI GGATG 2 cut(s) 381, 491
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 107
DdeI CTNAG 4 cut(s) 24, 98, 219, 516
DinI GGCGCC 1 cut(s) 106
DpnI GATC 4 cut(s) 180, 233, 245, 321
DpnII GATC 4 cut(s) 178, 231, 243, 319
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
EciI GGCGGA 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 2 cut(s) 115, 240
Eco31I GGTCTC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 164, 239
EcoICRI GAGCTC 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 115, 240
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
FaiI YATR 4 cut(s) 324, 408, 437, 513
FalI AAGNNNNNCTT 1 cut(s) 36
FauI CCCGC 1 cut(s) 275
FokI GGATG 2 cut(s) 388, 478
FriOI GRGCYC 2 cut(s) 115, 240
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 106
GsaI CCCAGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 108
HapII CCGG 2 cut(s) 57, 108
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 3 cut(s) 126, 209, 275
HpaII CCGG 2 cut(s) 57, 108
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 47, 178
Hpy99I CGWCG 1 cut(s) 269
HpyCH4III ACNGT 4 cut(s) 205, 332, 471, 535
HpyCH4V TGCA 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 7 cut(s) 255, 258, 261, 270, 279, 288, 297
HpyF3I CTNAG 4 cut(s) 24, 98, 219, 516
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 1 cut(s) 105
KasI GGCGCC 1 cut(s) 104
Kzo9I GATC 4 cut(s) 178, 231, 243, 319
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 4 cut(s) 110, 118, 193, 347
LpnPI CCDG 6 cut(s) 70, 121, 134, 205, 264, 462
Lsp1109I GCAGC 2 cut(s) 264, 468
LweI GCATC 2 cut(s) 500, 551
MaeI CTAG 1 cut(s) 401
MaeIII GTNAC 2 cut(s) 326, 465
MalI GATC 4 cut(s) 180, 233, 245, 321
MbiI CCGCTC 1 cut(s) 453
MboI GATC 4 cut(s) 178, 231, 243, 319
MboII GAAGA 3 cut(s) 12, 379, 460
MhlI GDGCHC 3 cut(s) 115, 218, 240
MluCI AATT 1 cut(s) 60
Mly113I GGCGCC 1 cut(s) 105
MmeI TCCRAC 2 cut(s) 70, 400
MseI TTAA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 2 cut(s) 57, 108
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 7 cut(s) 255, 258, 261, 270, 279, 288, 297
NarI GGCGCC 1 cut(s) 105
NdeII GATC 4 cut(s) 178, 231, 243, 319
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 326, 465
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 3 cut(s) 126, 209, 275
PluTI GGCGCC 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 4 cut(s) 178, 231, 243, 319
SduI GDGCHC 3 cut(s) 115, 218, 240
SetI ASST 8 cut(s) 115, 151, 158, 190, 197, 352, 406, 522
SfaNI GCATC 2 cut(s) 500, 551
SfcI CTRYAG 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 60
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 401
SstI GAGCTC 1 cut(s) 115
TaaI ACNGT 4 cut(s) 205, 332, 471, 535
TaqI TCGA 2 cut(s) 234, 380
TasI AATT 1 cut(s) 60
TfiI GAWTC 3 cut(s) 126, 209, 275
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 326, 465
TseI GCWGC 2 cut(s) 252, 456
Tsp45I GTSAC 2 cut(s) 326, 465
TspGWI ACGGA 2 cut(s) 105, 282
TspRI CASTG 1 cut(s) 474
XapI RAATTY 1 cut(s) 60
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.