Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010179

Physical Location & Seq

Genomic Coordinates Forward (+)

3377033 .. 3380716

Gene Structure 3684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06370.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTTGCTTGACACGTACACATCCGCATTTTTGGTTAAAAGACGGACGTGCGTGCGCCTCTGGAGAGAAGCTGCAGAGTGACATTCACATTTCTCACATGGCAGAGTTGTGCGTTTCTTCTCGGTCCTCCTTTCTCCTCCACCGACCCCAAACCGGAATTCTCCACAACCGCCTAAGCCCCCGAACCTCCACTTCTCTTTCTCTAAGTGGCGCCGGAGCTCCGCGTCTGCGATTCAAGCCTTACTTTAATCAAGCTCGCAGCTTGAAGCTTGGAGTGGTCTCCGATCCTACAGCTCCCAGCTTATTCACCGTTGATTCCTGGACCAAGGGTATCGTGATCGAGCCCGATATCGGCGGCGGCGACGGAGGCGAATTTGGCGGGAGAGGCGGCGGCGGAGGTGTTGGTGGAGGAGGAGGAGGTGATAACAGTAGCGGTAGAGGCGAGGAGGGAGGTGAGGATAGCAGCGAGAAAAAAGGGATGTCGATGTCTCAGAAGCTAACCCTAGCTTATGCTGTGCTTGTTGGAGTGGGTGGCGTTATGGGCTTTCTGAAGAGTGGCAGCAACAAGTCACCGTCAGCATCCTGGCTCTATCTTGCTTACAGTGTTCTTCCTAAAAGAACAGTTTCTGCATCATCCCTTGGGCTTGTTTTGGTCGTGCTTGTCTGTGTGTTTGTGAGCTGTTGTCAACAAGCCGCACAAGATATAGAAACAGGTGATGGTGGACAAGCAACACAGCTGGGTATGAGCATATACTACGAAATATCCAGAAGCAACATAGATGGTGACTGCTGCATTTGCCTGGGGGAGTTTGAGGAAGGTCATGAGCGCGCAGAGCTTCACAGGTGTAAGCATACTTATCACCGTGAATGCATTGATCGGTGGTTACCTAAACCATGTCCAATTTGTCGACAAAGACCAGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

310

Amino Acids

32.91

Weight (kDa)

8.21

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26240
fragaria_vesca	FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica	MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica	Prupe.7G189100_v2.0.a1
pyrus_communis	pycom02g08390 pycom15g20080
rosa_chinensis	RchiOBHm_Chr2g0096571
rosa_laevigata	RLG00000016650
rosa_multiflora	Rmu_sc0004096.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145530
rosa_rugosa	Rorug02G0058700
rosa_samantha	Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana	Rw2G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	910
AccII	CGCG	2 cut(s)	226, 831
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	159, 374
AcuI	CTGAAG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	155, 353
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	238, 268
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	3 cut(s)	320, 584, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	286, 495
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	629
ApeKI	GCWGC	5 cut(s)	73, 261, 465, 561, 792
ApoI	RAATTY	2 cut(s)	159, 374
Asp700I	GAANNNNTTC	1 cut(s)	625
AspLEI	GCGC	4 cut(s)	59, 215, 831, 833
AspS9I	GGNCC	2 cut(s)	126, 324
AsuHPI	GGTGA	7 cut(s)	301, 434, 467, 564, 728, 797, 854
AvaII	GGWCC	2 cut(s)	126, 324
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	223, 348
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	5 cut(s)	60, 273, 477, 573, 779
BccI	CCATC	2 cut(s)	713, 776
BciT130I	CCWGG	3 cut(s)	322, 586, 803
BcoDI	GTCTC	2 cut(s)	286, 495
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	2 cut(s)	74, 291
BfoI	RGCGCY	1 cut(s)	216
Bme1390I	CCNGG	3 cut(s)	322, 586, 803
Bme18I	GGWCC	2 cut(s)	126, 324
BmgBI	CACGTC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	126, 324
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	3 cut(s)	322, 586, 803
BmsI	GCATC	2 cut(s)	590, 641
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	327, 640, 802
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 353
Bse1I	ACTGG	1 cut(s)	920
BseBI	CCWGG	3 cut(s)	322, 586, 803
BseDI	CCNNGG	3 cut(s)	327, 640, 802
BseGI	GGATG	4 cut(s)	22, 486, 581, 635
BseLI	CCNNNNNNNGG	2 cut(s)	155, 353
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	920
BsePI	GCGCGC	1 cut(s)	829
BseRI	GAGGAG	5 cut(s)	128, 426, 429, 432, 461
BseXI	GCAGC	5 cut(s)	60, 273, 477, 573, 779
BseYI	CCCAGC	2 cut(s)	299, 739
Bsh1236I	CGCG	2 cut(s)	226, 831
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	156, 216
BslI	CCNNNNNNNGG	2 cut(s)	155, 353
BsmAI	GTCTC	2 cut(s)	286, 495
BsmI	GAATGC	1 cut(s)	875
Bso31I	GGTCTC	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	223, 348
Bsp143I	GATC	3 cut(s)	286, 339, 877
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	2 cut(s)	226, 831
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	78
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	920
BssECI	CCNNGG	3 cut(s)	327, 640, 802
BssHII	GCGCGC	1 cut(s)	829
BssMI	GATC	3 cut(s)	286, 339, 877
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	327, 640
Bst2UI	CCWGG	3 cut(s)	322, 586, 803
Bst4CI	ACNGT	6 cut(s)	313, 431, 576, 605, 625, 866
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	55, 259, 831
BstDEI	CTNAG	3 cut(s)	176, 206, 492
BstEII	GGTNACC	1 cut(s)	885
BstF5I	GGATG	4 cut(s)	22, 486, 581, 635
BstFNI	CGCG	2 cut(s)	226, 831
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	4 cut(s)	59, 215, 831, 833
BstKTI	GATC	3 cut(s)	289, 342, 880
BstMAI	GTCTC	2 cut(s)	286, 495
BstMBI	GATC	3 cut(s)	286, 339, 877
BstMWI	GCNNNNNNNGC	8 cut(s)	238, 369, 378, 387, 441, 543, 798, 835
BstNI	CCWGG	3 cut(s)	322, 586, 803
BstPI	GGTNACC	1 cut(s)	885
BstSCI	CCNGG	3 cut(s)	320, 584, 801
BstSFI	CTRYAG	2 cut(s)	74, 291
BstUI	CGCG	2 cut(s)	226, 831
BstV1I	GCAGC	5 cut(s)	60, 273, 477, 573, 779
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	22, 486, 581, 635
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	55, 259, 831
CaiI	CAGNNNCTG	1 cut(s)	629
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	4 cut(s)	59, 215, 831, 833
Cfr13I	GGNCC	2 cut(s)	126, 324
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	3 cut(s)	100, 824, 897
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	176, 206, 492
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	3 cut(s)	288, 341, 879
DpnII	GATC	3 cut(s)	286, 339, 877
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
EciI	GGCGGA	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	327, 640
Eco24I	GRGCYC	2 cut(s)	223, 348
Eco31I	GGTCTC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	126, 324
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	572
Eco91I	GGTNACC	1 cut(s)	885
EcoICRI	GAGCTC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	3 cut(s)	320, 584, 801
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	327, 640
EcoT22I	ATGCAT	1 cut(s)	875
EcoT38I	GRGCYC	2 cut(s)	223, 348
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	327, 640
FaeI	CATG	3 cut(s)	103, 827, 900
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	3 cut(s)	99, 823, 896
FauI	CCCGC	1 cut(s)	374
FblI	GTMKAC	1 cut(s)	910
FokI	GGATG	4 cut(s)	9, 493, 568, 622
FriOI	GRGCYC	2 cut(s)	223, 348
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	4 cut(s)	58, 214, 830, 832
GsaI	CCCAGC	2 cut(s)	303, 743
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	216
HapII	CCGG	2 cut(s)	156, 216
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	4 cut(s)	59, 215, 831, 833
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	103, 827, 900
Hin6I	GCGC	4 cut(s)	57, 213, 829, 831
HinP1I	GCGC	4 cut(s)	57, 213, 829, 831
HincII	GTYRAC	2 cut(s)	689, 911
HindII	GTYRAC	2 cut(s)	689, 911
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	234, 317
HpaII	CCGG	2 cut(s)	156, 216
HphI	GGTGA	7 cut(s)	301, 434, 467, 564, 728, 797, 854
Hpy166II	GTNNAC	4 cut(s)	20, 689, 725, 911
Hpy188I	TCNGA	3 cut(s)	286, 495, 552
Hpy188III	TCNNGA	4 cut(s)	63, 337, 768, 824
Hpy8I	GTNNAC	4 cut(s)	20, 689, 725, 911
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	812
HpyCH4III	ACNGT	6 cut(s)	313, 431, 576, 605, 625, 866
HpyCH4IV	ACGT	2 cut(s)	16, 49
HpyCH4V	TGCA	4 cut(s)	76, 632, 795, 873
HpyF10VI	GCNNNNNNNGC	8 cut(s)	238, 369, 378, 387, 441, 543, 798, 835
HpyF3I	CTNAG	3 cut(s)	176, 206, 492
HpySE526I	ACGT	2 cut(s)	16, 49
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	103, 827, 900
HspAI	GCGC	4 cut(s)	57, 213, 829, 831
KasI	GGCGCC	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	286, 339, 877
LmnI	GCTCC	3 cut(s)	218, 226, 301
Lsp1109I	GCAGC	5 cut(s)	60, 273, 477, 573, 779
LweI	GCATC	2 cut(s)	590, 641
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	16, 49
MaeIII	GTNAC	4 cut(s)	80, 570, 785, 885
MalI	GATC	3 cut(s)	288, 341, 879
MboI	GATC	3 cut(s)	286, 339, 877
MboII	GAAGA	3 cut(s)	111, 565, 602
MhlI	GDGCHC	2 cut(s)	223, 348
MluCI	AATT	3 cut(s)	159, 374, 903
Mly113I	GGCGCC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	505
Mph1103I	ATGCAT	1 cut(s)	875
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	2 cut(s)	38, 249
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	2 cut(s)	156, 216
MspR9I	CCNGG	3 cut(s)	322, 586, 803
Mva1269I	GAATGC	1 cut(s)	875
MvaI	CCWGG	3 cut(s)	322, 586, 803
MvnI	CGCG	2 cut(s)	226, 831
MwoI	GCNNNNNNNGC	8 cut(s)	238, 369, 378, 387, 441, 543, 798, 835
NarI	GGCGCC	1 cut(s)	213
NdeII	GATC	3 cut(s)	286, 339, 877
NlaIII	CATG	3 cut(s)	103, 827, 900
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	3 cut(s)	80, 570, 785
NsiI	ATGCAT	1 cut(s)	875
PagI	TCATGA	1 cut(s)	823
PauI	GCGCGC	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	234, 317
PfoI	TCCNGGA	1 cut(s)	320
PluTI	GGCGCC	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	320, 584, 801
PspEI	GGTNACC	1 cut(s)	885
PspFI	CCCAGC	2 cut(s)	299, 739
PspGI	CCWGG	3 cut(s)	320, 584, 801
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	126, 324
PstI	CTGCAG	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	629
PteI	GCGCGC	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	909
SaqAI	TTAA	2 cut(s)	38, 249
Sau3AI	GATC	3 cut(s)	286, 339, 877
Sau96I	GGNCC	2 cut(s)	126, 324
ScrFI	CCNGG	3 cut(s)	322, 586, 803
SduI	GDGCHC	2 cut(s)	223, 348
SfaNI	GCATC	2 cut(s)	590, 641
SfcI	CTRYAG	2 cut(s)	74, 291
SfoI	GGCGCC	1 cut(s)	214
SinI	GGWCC	2 cut(s)	126, 324
Sse9I	AATT	3 cut(s)	159, 374, 903
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	320, 584, 801
StyI	CCWWGG	2 cut(s)	327, 640
TaaI	ACNGT	6 cut(s)	313, 431, 576, 605, 625, 866
TaiI	ACGT	2 cut(s)	19, 52
TaqI	TCGA	3 cut(s)	342, 485, 910
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	159, 374, 903
TauI	GCSGC	5 cut(s)	360, 363, 393, 396, 698
TfiI	GAWTC	2 cut(s)	234, 317
Tru1I	TTAA	2 cut(s)	38, 249
Tru9I	TTAA	2 cut(s)	38, 249
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	3 cut(s)	80, 570, 785
TseI	GCWGC	5 cut(s)	73, 261, 465, 561, 792
Tsp45I	GTSAC	3 cut(s)	80, 570, 785
TspGWI	ACGGA	2 cut(s)	60, 381
TspRI	CASTG	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	126, 324
XapI	RAATTY	2 cut(s)	159, 374
XmiI	GTMKAC	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.