RLG00000016650

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010179
Physical Location & Seq
Reverse (-)
8574730 .. 8577808
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016650

Sequence Viewer

Length: 702 bp
ATGGCAGAGTTAAGCGTTTCTTCTCAGTCCTCCTTTCTCCTCCTCCGACCCAAAACCGGAGTTCTCCACAACCCCCGAACCGCCATTTCTCTTTCTCTAAGCGGCGCCGGAGCTCCGCGCCTGCGATTCGTGGCTTCCTCCGATCAGGCTCGTAGCTTCAGGCTCGGGGTGGTCTCCCATCCTACAGCTCCCGGCTTATTCACCGTTGATTCGGGCACTAAGGGTATTGTGATCGAGCCCGAGATCGGAGGCGGAGGGGGAGGCGGAGGCGACGGAGGCGATTCTGGCGGGAGAGGCGGCGGTGGCGGCGGAGGAGGAGGGGATCGTAGTGACGATAGAGGCGAGGAGGGAGCTGACGATAGTAGCAAGAAGAAAGGGATGTCGATGTCTCAGAAACTAACCCTAGCTTATGCTCTGCTTGTTGGAGTGGGTGGCGTTATGGGCTTTTTGAAGAGCGGCAGCAACAAGTCACTGTTGGCAGGAGGAATATCAGCATCCTTACTCTATCTTGTTTATACTGAGCTTCCTAAAAGAACAGTTTTTGCATCATCTCTTGGGCTTGGGCTATCTGCTGCCCTTCTGGTCGTGATGGGCTCTCGTTTCAAGAGGTCAGGGAAGATATTTCCAGCCGGCGTTGTATCTCTCGTGTCACTCGTAATGACTGGTGGCTACTTTCATGGAATTCTACGTGGCATGCACTGA

Protein Analysis

234

Amino Acids

23.39

Weight (kDa)

10.04

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 134 - 224 9.5e-20 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26240
fragaria_vesca FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica Prupe.7G189100_v2.0.a1
pyrus_communis pycom02g08390 pycom15g20080
rosa_chinensis RchiOBHm_Chr2g0096571
rosa_laevigata RLG00000016650
rosa_multiflora Rmu_sc0004096.1_g000004
rosa_roxburghii Rroxscaffold_2G00145530
rosa_rugosa Rorug02G0058700
rosa_samantha Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana Rw2G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 456
AccII CGCG 1 cut(s) 118
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 681
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 56, 245
AgsI TTSAA 2 cut(s) 451, 604
AluBI AGCT 6 cut(s) 113, 156, 188, 353, 407, 523
AluI AGCT 6 cut(s) 113, 156, 188, 353, 407, 523
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 178, 393
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 2 cut(s) 164, 239
ApeKI GCWGC 2 cut(s) 459, 572
ApoI RAATTY 1 cut(s) 681
AspLEI GCGC 2 cut(s) 107, 120
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 2 cut(s) 164, 239
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 3 cut(s) 115, 240, 596
BauI CACGAG 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 471, 559
BccI CCATC 2 cut(s) 186, 583
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 178, 393
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 6 cut(s) 103, 298, 307, 457, 460, 573
BlsI GCNGC 6 cut(s) 104, 299, 308, 458, 461, 574
Bme1390I CCNGG 1 cut(s) 192
BmeT110I CYCGRG 2 cut(s) 164, 239
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 503, 554
BpuMI CCSGG 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 245
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 667
BseGI GGATG 3 cut(s) 178, 384, 494
BseLI CCNNNNNNNGG 2 cut(s) 56, 245
BseMII CTCAG 3 cut(s) 38, 404, 510
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 5 cut(s) 29, 32, 327, 330, 359
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 2 cut(s) 471, 559
Bsh1236I CGCG 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 164, 239
BsiSI CCGG 4 cut(s) 57, 108, 192, 630
BslI CCNNNNNNNGG 2 cut(s) 56, 245
BsmAI GTCTC 2 cut(s) 178, 393
Bso31I GGTCTC 1 cut(s) 178
BsoBI CYCGRG 2 cut(s) 164, 239
Bsp1286I GDGCHC 4 cut(s) 115, 218, 240, 596
Bsp143I GATC 4 cut(s) 142, 231, 243, 322
BspCNI CTCAG 3 cut(s) 37, 403, 511
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 667
BssAI RCCGGY 1 cut(s) 629
BssMI GATC 4 cut(s) 142, 231, 243, 322
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 644
Bst2BI CACGAG 1 cut(s) 644
Bst4CI ACNGT 3 cut(s) 205, 474, 538
Bst6I CTCTTC 1 cut(s) 446
BstACI GRCGYC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 3 cut(s) 122, 631, 695
BstDEI CTNAG 5 cut(s) 24, 98, 219, 390, 519
BstF5I GGATG 3 cut(s) 178, 384, 494
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 120
BstKTI GATC 4 cut(s) 145, 234, 246, 325
BstMAI GTCTC 2 cut(s) 178, 393
BstMBI GATC 4 cut(s) 142, 231, 243, 322
BstMWI GCNNNNNNNGC 6 cut(s) 276, 285, 294, 303, 306, 441
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 471, 559
BtsCI GGATG 3 cut(s) 178, 384, 494
BtsIMutI CAGTG 2 cut(s) 470, 697
Cac8I GCNNGC 3 cut(s) 122, 631, 695
CfoI GCGC 2 cut(s) 107, 120
Cfr10I RCCGGY 1 cut(s) 629
CviAII CATG 2 cut(s) 677, 694
DdeI CTNAG 5 cut(s) 24, 98, 219, 390, 519
DinI GGCGCC 1 cut(s) 106
DpnI GATC 4 cut(s) 144, 233, 245, 324
DpnII GATC 4 cut(s) 142, 231, 243, 322
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 3 cut(s) 267, 279, 324
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 3 cut(s) 115, 240, 596
Eco31I GGTCTC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 2 cut(s) 164, 239
EcoICRI GAGCTC 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 681
EcoT38I GRGCYC 3 cut(s) 115, 240, 596
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
FaeI CATG 2 cut(s) 680, 697
FaiI YATR 5 cut(s) 411, 440, 516, 678, 695
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 2 cut(s) 676, 693
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 6 cut(s) 103, 298, 307, 457, 460, 573
FokI GGATG 3 cut(s) 165, 391, 481
FriOI GRGCYC 3 cut(s) 115, 240, 596
Fsp4HI GCNGC 6 cut(s) 103, 298, 307, 457, 460, 573
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 106, 119
GluI GCNGC 6 cut(s) 103, 298, 307, 457, 460, 573
HaeII RGCGCY 1 cut(s) 108
HapII CCGG 4 cut(s) 57, 108, 192, 630
HhaI GCGC 2 cut(s) 107, 120
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 680, 697
Hin6I GCGC 2 cut(s) 105, 118
HinP1I GCGC 2 cut(s) 105, 118
HinfI GANTC 3 cut(s) 126, 209, 281
HpaII CCGG 4 cut(s) 57, 108, 192, 630
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 47, 142, 248, 393
Hpy188III TCNNGA 2 cut(s) 586, 604
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 3 cut(s) 205, 474, 538
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 2 cut(s) 545, 697
HpyF10VI GCNNNNNNNGC 6 cut(s) 276, 285, 294, 303, 306, 441
HpyF3I CTNAG 5 cut(s) 24, 98, 219, 390, 519
HpySE526I ACGT 1 cut(s) 688
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 680, 697
HspAI GCGC 2 cut(s) 105, 118
KasI GGCGCC 1 cut(s) 104
KroI GCCGGC 1 cut(s) 629
KroNI GCCGGC 1 cut(s) 631
Kzo9I GATC 4 cut(s) 142, 231, 243, 322
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 4 cut(s) 110, 118, 193, 350
Lsp1109I GCAGC 2 cut(s) 471, 559
LweI GCATC 2 cut(s) 503, 554
MaeI CTAG 1 cut(s) 404
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 3 cut(s) 329, 468, 648
MalI GATC 4 cut(s) 144, 233, 245, 324
MbiI CCGCTC 1 cut(s) 456
MboI GATC 4 cut(s) 142, 231, 243, 322
MboII GAAGA 4 cut(s) 12, 382, 463, 628
MhlI GDGCHC 4 cut(s) 115, 218, 240, 596
MluCI AATT 1 cut(s) 681
Mly113I GGCGCC 1 cut(s) 105
MmeI TCCRAC 2 cut(s) 70, 403
MroNI GCCGGC 1 cut(s) 629
MseI TTAA 1 cut(s) 11
MspI CCGG 4 cut(s) 57, 108, 192, 630
MspR9I CCNGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 6 cut(s) 276, 285, 294, 303, 306, 441
NaeI GCCGGC 1 cut(s) 631
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 1 cut(s) 192
NdeII GATC 4 cut(s) 142, 231, 243, 322
NgoMIV GCCGGC 1 cut(s) 629
NlaIII CATG 2 cut(s) 680, 697
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 3 cut(s) 329, 468, 648
NspI RCATGY 1 cut(s) 697
PaeI GCATGC 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 651
PdiI GCCGGC 1 cut(s) 631
PfeI GAWTC 3 cut(s) 126, 209, 281
PkrI GCNGC 6 cut(s) 104, 299, 308, 458, 461, 574
PluTI GGCGCC 1 cut(s) 108
Ppu21I YACGTR 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 6 cut(s) 103, 298, 307, 457, 460, 573
Sau3AI GATC 4 cut(s) 142, 231, 243, 322
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 4 cut(s) 115, 218, 240, 596
SetI ASST 8 cut(s) 115, 158, 190, 355, 409, 525, 611, 691
SfaNI GCATC 2 cut(s) 503, 554
SfcI CTRYAG 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 106
SphI GCATGC 1 cut(s) 697
Sse9I AATT 1 cut(s) 681
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 1 cut(s) 404
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 3 cut(s) 205, 474, 538
TaiI ACGT 1 cut(s) 691
TaqI TCGA 2 cut(s) 234, 383
TasI AATT 1 cut(s) 681
TauI GCSGC 4 cut(s) 105, 300, 309, 459
TfiI GAWTC 3 cut(s) 126, 209, 281
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 3 cut(s) 329, 468, 648
TseI GCWGC 2 cut(s) 459, 572
Tsp45I GTSAC 3 cut(s) 329, 468, 648
TspDTI ATGAA 1 cut(s) 665
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 477
XapI RAATTY 1 cut(s) 681
XceI RCATGY 1 cut(s) 697
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.