Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010179

Physical Location & Seq

Genomic Coordinates Reverse (-)

18348174 .. 18350198

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1225900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCAGACTTGTGCATTTCCCAGTCCTCCCTTTTCCTCCTACGCCCCAAAATCGGAGCTTTCCACAACACCGCCATTTCTCTTCCCCTCGCTGGCGGCGGAGCTAGGAGCCTGCAGCACAACAGCAATCTCACCTTTCACGGATTCGGAGCATCTCGCGGTTTGAGCTACACCACGTCGATTCAAAGGCTTGGAGTGGTTTCCGACACCAAAACTACCACCATATTCACTGTTGATTCGGGAATCAAGGATATCGGTATCGAACCGGTTGCCGGCGGCGGAGACGGTGGGGGTGATTTTGGCGGTAGGGGAGGCGGCGGCGGCGGAGGGGGTGGAGGTGGAGGTGATAATAGTGAGGGTAAAGGGGAGGGCGAGGAGGGACCTGAAGAGATCAAGAAGAAAGGGATGTCGATGTCTCAGAAACTAACCCTAGGATATGCTGCCCTTGTTGGAGTGGGTGGCCTTATGGGCTTTTTGAAGAGTGGCAGCCAGAAGTCACTGTTGGCAGGGGGAATATCAGCGGCCTTACTCTTTTATGTTTCTACTGAGCTTCCCGTAAGACCAGTGTTTGCATCATCTATCGGGCTTGGGTTGTCTGCTGCCCTCCTAGCAGTGATGGGTTCTCGTTTCAAGAAGTCAGGGAAGGTCTTTCCAGCCGGCGTTGTATCACTTGTGTCGCTTGTAATGACCGGTGGCTACTTACATGGAATTCTGCGTAGCGCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

243

Amino Acids

24.16

Weight (kDa)

9.52

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	143 - 233	1.2e-19	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26240
fragaria_vesca	FvH4_1g06370 FvH4_1g06370 FvH4_1g06370 FvH4_1g09870 FvH4_1g09870
malus_domestica	MD02G1106000.v1.1 MD15G1225900.v1.1
prunus_persica	Prupe.7G189100_v2.0.a1
pyrus_communis	pycom02g08390 pycom15g20080
rosa_chinensis	RchiOBHm_Chr2g0096571
rosa_laevigata	RLG00000016650
rosa_multiflora	Rmu_sc0004096.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145530
rosa_rugosa	Rorug02G0058700
rosa_samantha	Rh2AG105800 Rh2BG108300 Rh2CG110100 Rh2DG108900
rosa_wichuraiana	Rw2G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	708
AcuI	CTGAAG	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	53, 92, 272
AgeI	ACCGGT	2 cut(s)	265, 689
AgsI	TTSAA	3 cut(s)	185, 478, 631
AjiI	CACGTC	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	4 cut(s)	59, 104, 168, 550
AluI	AGCT	4 cut(s)	59, 104, 168, 550
Alw26I	GTCTC	2 cut(s)	276, 420
AoxI	GGCC	2 cut(s)	460, 522
ApeKI	GCWGC	4 cut(s)	115, 440, 486, 599
ApoI	RAATTY	1 cut(s)	708
AsiGI	ACCGGT	2 cut(s)	265, 689
AspA2I	CCTAGG	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	124, 305, 356
AvaII	GGWCC	1 cut(s)	380
AvrII	CCTAGG	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	127, 427, 498, 586
BccI	CCATC	1 cut(s)	610
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcoDI	GTCTC	2 cut(s)	276, 420
BfaI	CTAG	3 cut(s)	105, 431, 608
BfmI	CTRYAG	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	468
BlnI	CCTAGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	110, 381
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	161, 581
BmuI	ACTGGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	2 cut(s)	265, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 92, 272
Bse118I	RCCGGY	4 cut(s)	265, 272, 656, 689
Bse1I	ACTGG	2 cut(s)	22, 563
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	3 cut(s)	53, 92, 272
BseMII	CTCAG	2 cut(s)	431, 537
BseNI	ACTGG	2 cut(s)	22, 563
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	127, 427, 498, 586
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	462, 524
BshTI	ACCGGT	2 cut(s)	265, 689
BsiSI	CCGG	4 cut(s)	266, 273, 657, 690
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	53, 92, 272
BsmAI	GTCTC	2 cut(s)	276, 420
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	462, 524
Bsp143I	GATC	1 cut(s)	390
BspANI	GGCC	2 cut(s)	462, 524
BspCNI	CTCAG	2 cut(s)	430, 538
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	110, 381
BspMAI	CTGCAG	1 cut(s)	117
BsrFI	RCCGGY	4 cut(s)	265, 272, 656, 689
BsrI	ACTGG	2 cut(s)	22, 563
BssAI	RCCGGY	4 cut(s)	265, 272, 656, 689
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	232, 287, 501
Bst6I	CTCTTC	3 cut(s)	87, 381, 473
BstC8I	GCNNGC	4 cut(s)	94, 113, 274, 658
BstDEI	CTNAG	2 cut(s)	417, 546
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	2 cut(s)	276, 420
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 321, 468, 608
BstSFI	CTRYAG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	127, 427, 498, 586
BsuRI	GGCC	2 cut(s)	462, 524
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	5 cut(s)	228, 497, 570, 618, 724
Cac8I	GCNNGC	4 cut(s)	94, 113, 274, 658
CfoI	GCGC	1 cut(s)	722
Cfr10I	RCCGGY	4 cut(s)	265, 272, 656, 689
Cfr13I	GGNCC	1 cut(s)	380
CspAI	ACCGGT	2 cut(s)	265, 689
CviAII	CATG	1 cut(s)	704
DdeI	CTNAG	2 cut(s)	417, 546
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Eam1104I	CTCTTC	3 cut(s)	87, 381, 473
EarI	CTCTTC	3 cut(s)	87, 381, 473
EciI	GGCGGA	3 cut(s)	114, 294, 339
Eco130I	CCWWGG	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	1 cut(s)	707
FaiI	YATR	5 cut(s)	224, 438, 467, 537, 705
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	1 cut(s)	703
FokI	GGATG	1 cut(s)	418
FspBI	CTAG	3 cut(s)	105, 431, 608
GlaI	GCGC	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	462, 524
HapII	CCGG	4 cut(s)	266, 273, 657, 690
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	1 cut(s)	707
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HinfI	GANTC	4 cut(s)	144, 181, 236, 243
HpaII	CCGG	4 cut(s)	266, 273, 657, 690
HphI	GGTGA	3 cut(s)	124, 305, 356
Hpy188I	TCNGA	4 cut(s)	56, 149, 205, 420
Hpy188III	TCNNGA	3 cut(s)	240, 394, 631
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	3 cut(s)	232, 287, 501
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	15, 115, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 321, 468, 608
HpyF3I	CTNAG	2 cut(s)	417, 546
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	707
HspAI	GCGC	1 cut(s)	720
KroI	GCCGGC	2 cut(s)	272, 656
KroNI	GCCGGC	2 cut(s)	274, 658
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	4 cut(s)	56, 101, 108, 149
Lsp1109I	GCAGC	4 cut(s)	127, 427, 498, 586
LweI	GCATC	2 cut(s)	161, 581
MaeI	CTAG	3 cut(s)	105, 431, 608
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	4 cut(s)	74, 398, 409, 490
MluCI	AATT	1 cut(s)	708
MmeI	TCCRAC	2 cut(s)	228, 430
MroNI	GCCGGC	2 cut(s)	272, 656
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	4 cut(s)	266, 273, 657, 690
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	165, 321, 468, 608
NaeI	GCCGGC	2 cut(s)	274, 658
NdeII	GATC	1 cut(s)	390
NgoMIV	GCCGGC	2 cut(s)	272, 656
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	2 cut(s)	110, 381
NmuCI	GTSAC	1 cut(s)	495
PdiI	GCCGGC	2 cut(s)	274, 658
PfeI	GAWTC	4 cut(s)	144, 181, 236, 243
PinAI	ACCGGT	2 cut(s)	265, 689
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	110, 381
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	380
SfaNI	GCATC	2 cut(s)	161, 581
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	708
SspMI	CTAG	3 cut(s)	105, 431, 608
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	232, 287, 501
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	3 cut(s)	179, 261, 410
TasI	AATT	1 cut(s)	708
TauI	GCSGC	6 cut(s)	99, 279, 318, 321, 324, 524
TfiI	GAWTC	4 cut(s)	144, 181, 236, 243
TscAI	CASTG	4 cut(s)	235, 504, 570, 618
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	4 cut(s)	115, 440, 486, 599
Tsp45I	GTSAC	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	4 cut(s)	235, 504, 570, 618
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	708
XmaJI	CCTAGG	1 cut(s)	430
XspI	CTAG	3 cut(s)	105, 431, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.