AT2G26850

F-box family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004992
Physical Location & Seq
Reverse (-)
11448976 .. 11451270
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26850.1

Sequence Viewer

Length: 1116 bp
ATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCTTCTTCTTTTCCAAATCTTTATCCTTTCCTCAATGGGCATCTAAAACCAAAAATTTGCTCTCCTTCTACTTCTCCAAGTATTTGTTTACAAACAGTCTACACCAGATCACACCCGATCTAGCCTCTCCGGTGCTCGGAAAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACTGCATTCTTGAACTTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGTTAAGAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAAAAATCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTCCATATCATCTCGATTCTCCTCATCACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTATGCGATCGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAGATATCCATCTTCAATCCCTCTTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTCCAGCTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGCTCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAAAAGAGCAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTGATGCATCACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACCACATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGACACATGGAATCTTGTGATGGCAATCTAAACCATTGTCAATGCCATAATAGCGAGATGATGGTGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGAGAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAAATAAATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

371

Amino Acids

43.41

Weight (kDa)

7.62

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 62 - 104 6e-07 F-box domain
F-box-like PF12937 62 - 105 6.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 1 cut(s) 133
AciI CCGC 1 cut(s) 704
AclWI GGATC 2 cut(s) 814, 973
AcoI YGGCCR 2 cut(s) 432, 1094
AcsI RAATTY 3 cut(s) 88, 944, 1044
AfaI GTAC 2 cut(s) 250, 956
AfiI CCNNNNNNNGG 3 cut(s) 170, 258, 686
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 224, 319, 510, 668, 710, 1076
AhlI ACTAGT 1 cut(s) 416
AjiI CACGTC 1 cut(s) 718
AloI GAACNNNNNNTCC 2 cut(s) 1016, 1048
AluBI AGCT 6 cut(s) 270, 575, 637, 642, 671, 743
AluI AGCT 6 cut(s) 270, 575, 637, 642, 671, 743
Alw21I GWGCWC 2 cut(s) 171, 639
Alw26I GTCTC 2 cut(s) 32, 801
AlwI GGATC 2 cut(s) 814, 973
AoxI GGCC 2 cut(s) 432, 1094
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 3 cut(s) 88, 944, 1044
AsiSI GCGATCGC 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 1 cut(s) 750
AsuII TTCGAA 1 cut(s) 1048
AvaII GGWCC 1 cut(s) 344
BalI TGGCCA 2 cut(s) 434, 1096
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 2 cut(s) 326, 1032
Bbv12I GWGCWC 2 cut(s) 171, 639
BbvI GCAGC 1 cut(s) 752
BccI CCATC 6 cut(s) 511, 849, 887, 928, 1105, 1112
BciVI GTATCC 1 cut(s) 687
BclI TGATCA 2 cut(s) 295, 484
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 32, 801
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 4 cut(s) 155, 258, 417, 672
BfmI CTRYAG 1 cut(s) 265
BfuI GTATCC 1 cut(s) 687
BisI GCNGC 1 cut(s) 741
BlpI GCTNAGC 2 cut(s) 633, 638
BlsI GCNGC 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 4 cut(s) 83, 619, 742, 764
BpiI GAAGAC 2 cut(s) 326, 1032
Bpu1102I GCTNAGC 2 cut(s) 633, 638
Bpu14I TTCGAA 1 cut(s) 1048
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 804
BsaBI GATNNNNATC 3 cut(s) 483, 502, 897
BsaI GGTCTC 1 cut(s) 801
BsaJI CCNNGG 2 cut(s) 252, 340
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 258, 686
Bse1I ACTGG 2 cut(s) 823, 952
Bse3DI GCAATG 1 cut(s) 374
Bse8I GATNNNNATC 3 cut(s) 483, 502, 897
BseDI CCNNGG 2 cut(s) 252, 340
BseGI GGATG 3 cut(s) 464, 860, 1097
BseJI GATNNNNATC 3 cut(s) 483, 502, 897
BseLI CCNNNNNNNGG 3 cut(s) 170, 258, 686
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 2 cut(s) 624, 652
BseNI ACTGG 2 cut(s) 823, 952
BseRI GAGGAG 2 cut(s) 393, 508
BseXI GCAGC 1 cut(s) 752
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 434, 1096
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 171, 639
BsiSI CCGG 2 cut(s) 164, 804
BslI CCNNNNNNNGG 3 cut(s) 170, 258, 686
BsmAI GTCTC 2 cut(s) 32, 801
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 2 cut(s) 434, 1096
Bso31I GGTCTC 1 cut(s) 801
Bsp119I TTCGAA 1 cut(s) 1048
Bsp1286I GDGCHC 2 cut(s) 171, 639
Bsp143I GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
Bsp1720I GCTNAGC 2 cut(s) 633, 638
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 704
BspANI GGCC 2 cut(s) 434, 1096
BspCNI CTCAG 2 cut(s) 625, 651
BspPI GGATC 2 cut(s) 814, 973
BspT104I TTCGAA 1 cut(s) 1048
BspTNI GGTCTC 1 cut(s) 801
BsrDI GCAATG 1 cut(s) 374
BsrI ACTGG 2 cut(s) 823, 952
BssECI CCNNGG 2 cut(s) 252, 340
BssMI GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
BssT1I CCWWGG 2 cut(s) 252, 340
Bst4CI ACNGT 3 cut(s) 131, 590, 961
BstBI TTCGAA 1 cut(s) 1048
BstDEI CTNAG 2 cut(s) 633, 638
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 3 cut(s) 464, 860, 1097
BstKTI GATC 8 cut(s) 144, 154, 298, 458, 487, 822, 968, 1003
BstMAI GTCTC 2 cut(s) 32, 801
BstMBI GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 2 cut(s) 924, 1093
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 2 cut(s) 326, 1032
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 2 cut(s) 434, 1096
BtgI CCRYGG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 718
BtsCI GGATG 3 cut(s) 464, 860, 1097
BtsIMutI CAGTG 2 cut(s) 648, 830
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 1076
Csp6I GTAC 2 cut(s) 249, 955
CviAII CATG 8 cut(s) 253, 529, 602, 613, 621, 686, 723, 880
CviQI GTAC 2 cut(s) 249, 955
DdeI CTNAG 2 cut(s) 633, 638
DpnI GATC 8 cut(s) 143, 153, 297, 457, 486, 821, 967, 1002
DpnII GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
EaeI YGGCCR 2 cut(s) 432, 1094
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 252, 340
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 1044
EcoRV GATATC 1 cut(s) 500
EcoT14I CCWWGG 2 cut(s) 252, 340
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 2 cut(s) 252, 340
FaeI CATG 8 cut(s) 256, 532, 605, 616, 624, 689, 726, 883
FatI CATG 8 cut(s) 252, 528, 601, 612, 620, 685, 722, 879
FbaI TGATCA 2 cut(s) 295, 484
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 3 cut(s) 451, 867, 1084
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 4 cut(s) 155, 258, 417, 672
GluI GCNGC 1 cut(s) 741
HaeIII GGCC 2 cut(s) 434, 1096
HapII CCGG 2 cut(s) 164, 804
HgaI GACGC 1 cut(s) 1076
Hin1II CATG 8 cut(s) 256, 532, 605, 616, 624, 689, 726, 883
HinfI GANTC 4 cut(s) 398, 521, 782, 884
HpaII CCGG 2 cut(s) 164, 804
HphI GGTGA 1 cut(s) 750
Hpy166II GTNNAC 4 cut(s) 123, 134, 583, 957
Hpy188I TCNGA 4 cut(s) 173, 241, 781, 965
Hpy188III TCNNGA 5 cut(s) 188, 221, 395, 476, 518
Hpy8I GTNNAC 4 cut(s) 123, 134, 583, 957
HpyAV CCTTC 4 cut(s) 109, 212, 357, 825
HpyCH4III ACNGT 3 cut(s) 131, 590, 961
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 2 cut(s) 216, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 924, 1093
HpyF3I CTNAG 2 cut(s) 633, 638
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 8 cut(s) 256, 532, 605, 616, 624, 689, 726, 883
Ksp22I TGATCA 2 cut(s) 295, 484
Kzo9I GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
LmnI GCTCC 1 cut(s) 748
LpnPI CCDG 9 cut(s) 152, 177, 210, 540, 585, 817, 836, 965, 979
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 4 cut(s) 83, 619, 742, 764
MaeI CTAG 4 cut(s) 155, 258, 417, 672
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 2 cut(s) 718, 1016
MalI GATC 8 cut(s) 143, 153, 297, 457, 486, 821, 967, 1002
MboI GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
MboII GAAGA 8 cut(s) 28, 31, 221, 331, 372, 498, 1037, 1079
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 2 cut(s) 171, 639
MlsI TGGCCA 2 cut(s) 434, 1096
MluCI AATT 6 cut(s) 88, 183, 699, 944, 1044, 1057
MluNI TGGCCA 2 cut(s) 434, 1096
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 3 cut(s) 853, 921, 943
Mox20I TGGCCA 2 cut(s) 434, 1096
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 228
MscI TGGCCA 2 cut(s) 434, 1096
MseI TTAA 4 cut(s) 275, 797, 948, 990
Msp20I TGGCCA 2 cut(s) 434, 1096
MspI CCGG 2 cut(s) 164, 804
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 924, 1093
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 252
NdeII GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
NlaIII CATG 8 cut(s) 256, 532, 605, 616, 624, 689, 726, 883
NmuCI GTSAC 1 cut(s) 718
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 1 cut(s) 605
NspV TTCGAA 1 cut(s) 1048
PciI ACATGT 1 cut(s) 601
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 398, 782, 884
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 1 cut(s) 742
Ple19I CGATCG 1 cut(s) 458
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PscI ACATGT 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 819
PvuI CGATCG 1 cut(s) 458
RgaI GCGATCGC 1 cut(s) 458
RsaI GTAC 2 cut(s) 250, 956
RsaNI GTAC 2 cut(s) 249, 955
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 4 cut(s) 275, 797, 948, 990
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 8 cut(s) 141, 151, 295, 455, 484, 819, 965, 1000
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 2 cut(s) 171, 639
SfaAI GCGATCGC 1 cut(s) 458
SfaNI GCATC 4 cut(s) 83, 619, 742, 764
SfcI CTRYAG 1 cut(s) 265
SfuI TTCGAA 1 cut(s) 1048
SgfI GCGATCGC 1 cut(s) 458
SinI GGWCC 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 6 cut(s) 88, 183, 699, 944, 1044, 1057
SsiI CCGC 1 cut(s) 704
SspMI CTAG 4 cut(s) 155, 258, 417, 672
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 2 cut(s) 252, 340
TaaI ACNGT 3 cut(s) 131, 590, 961
TaiI ACGT 1 cut(s) 720
TaqI TCGA 5 cut(s) 210, 396, 475, 549, 1048
TasI AATT 6 cut(s) 88, 183, 699, 944, 1044, 1057
TatI WGTACW 1 cut(s) 954
TfiI GAWTC 3 cut(s) 398, 782, 884
Tru1I TTAA 4 cut(s) 275, 797, 948, 990
Tru9I TTAA 4 cut(s) 275, 797, 948, 990
TscAI CASTG 2 cut(s) 655, 830
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 3 cut(s) 453, 545, 601
TspRI CASTG 2 cut(s) 655, 830
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 3 cut(s) 88, 944, 1044
XceI RCATGY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 4 cut(s) 155, 258, 417, 672
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.