Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004992

Physical Location & Seq

Genomic Coordinates Reverse (-)

41084064 .. 41087732

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAAAAGAAATGGGGCAGAGTAATTGGCCCTGCTGCTTATAGGGAGTGGCAGTGGCAATCCATGGCCAATCAAAAGCAGAGCCCGAATCAGAATCAGCTGGCCAAGCCACAAAAAGCAGCAGGCAAAGGCCTAATGAGAATTCTATCACTGTCTCTTTCTTGGCCTTTGTCGTGGATTAGATCATCCAGCGACCATGATGAATTTATCAAAAGCAGGAGGAGGACTTGCTTCCCGTCTCATCATCATGAGAATTCTGTCATGTCTTGGTACCTTGCTCTTGAGACCGGCAGGTTCTGGTTTCCTGCACAAGTCTATAACCGAGAGAATGGTCATGTTGGTTTTGTCTTGTCATGCTATGATGCTGAGCTTAGCTATGATCCCCGCACTGACACATTCCAAGCCAGATATCCACCACATGGAAGGAGAGCAGTTGCAGTTGAGAATTGTGTGCCCTGGGAAAGGCTTAGAGCACCACCTGTTGACACTTCGCCTCATGATCTTCATATCTCTGACTGTTTGAATGATTTGCGTCCTGGGGATCATATTGAGATTCAGTGGAGAAGAAATAAAGAATTTCCTTATGGTTGGTGGTATGGTGTTGTAGGTCACCTGGAATCATGTGATGGGAATGAGACTTACTGCCTTTGTCATAATAGTGACAATGTGGTGCTGGAGTTCAACCAGTATGCACGTGGTTCGCGGTGGAGATGCACAACAATCAGCCGGAAAAACCATCGAGAAGAGGGAGACGAGGCAGATGGTTTCTACGGGGGAATCCGCAAGCTTTGCACCAAGGAAGAGATCTCCGTGTGGACTTGTCTTTGGCCAACTCAAGTCCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

282

Amino Acids

32.99

Weight (kDa)

8.3

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26850 AT2G26850 AT2G32560 AT2G32560
fragaria_vesca	FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720
malus_domestica	MD03G1164600.v1.1 MD11G1183200.v1.1
prunus_persica	Prupe.4G262500_v2.0.a1 Prupe.4G262500_v2.0.a1
pyrus_communis	pycom06g02450 pycom5153684g00010
rosa_chinensis	RchiOBHm_Chr5g0050291
rosa_laevigata	RLG00000034694
rosa_multiflora	Rmu_sc0000889.1_g000002
rosa_roxburghii	Rroxscaffold_1G00030750
rosa_rugosa	Rorug05G0260000 Rorug05G0260000
rosa_samantha	Rh5AG331400 Rh5BG342000 Rh5CG369300 Rh5DG354900
rosa_wichuraiana	Rw5G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccII	CGCG	1 cut(s)	703
AciI	CCGC	3 cut(s)	385, 703, 781
AclWI	GGATC	2 cut(s)	374, 549
AcoI	YGGCCR	3 cut(s)	66, 102, 827
AcsI	RAATTY	4 cut(s)	141, 203, 253, 575
AcvI	CACGTG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	419, 462
AgsI	TTSAA	2 cut(s)	523, 682
AjnI	CCWGG	4 cut(s)	455, 535, 612, 840
AluBI	AGCT	4 cut(s)	100, 370, 375, 787
AluI	AGCT	4 cut(s)	100, 370, 375, 787
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	5 cut(s)	159, 243, 278, 629, 744
AlwI	GGATC	2 cut(s)	374, 549
AlwNI	CAGNNNCTG	1 cut(s)	297
AoxI	GGCC	6 cut(s)	28, 66, 102, 130, 164, 827
ApeKI	GCWGC	2 cut(s)	35, 119
ApoI	RAATTY	4 cut(s)	141, 203, 253, 575
Asp718I	GGTACC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	456
BalI	TGGCCA	3 cut(s)	68, 104, 829
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	22, 131
BccI	CCATC	3 cut(s)	620, 744, 755
BcgI	CGANNNNNNTGC	2 cut(s)	681, 715
BciT130I	CCWGG	4 cut(s)	457, 537, 614, 842
BcoDI	GTCTC	5 cut(s)	159, 243, 278, 629, 744
BfuAI	ACCTGC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	2 cut(s)	36, 120
BlpI	GCTNAGC	2 cut(s)	366, 371
BlsI	GCNGC	2 cut(s)	37, 121
Bme1390I	CCNGG	4 cut(s)	457, 537, 614, 842
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	4 cut(s)	457, 537, 614, 842
BmsI	GCATC	2 cut(s)	352, 701
BpmI	CTGGAG	1 cut(s)	695
Bpu1102I	GCTNAGC	2 cut(s)	366, 371
BpuEI	CTTGAG	2 cut(s)	302, 819
BsaAI	YACGTR	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	63, 455, 456, 536, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 462
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	685
BseBI	CCWGG	4 cut(s)	457, 537, 614, 842
BseDI	CCNNGG	5 cut(s)	63, 455, 456, 536, 795
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	419, 462
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	22, 131
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	6 cut(s)	30, 68, 104, 132, 166, 829
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	2 cut(s)	288, 727
BslI	CCNNNNNNNGG	2 cut(s)	419, 462
BsmAI	GTCTC	5 cut(s)	159, 243, 278, 629, 744
BsmBI	CGTCTC	2 cut(s)	243, 744
BsnI	GGCC	6 cut(s)	30, 68, 104, 132, 166, 829
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	86, 456, 475
Bsp143I	GATC	5 cut(s)	182, 379, 499, 541, 804
Bsp1720I	GCTNAGC	2 cut(s)	366, 371
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	3 cut(s)	385, 703, 781
BspANI	GGCC	6 cut(s)	30, 68, 104, 132, 166, 829
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	703
BspHI	TCATGA	2 cut(s)	247, 496
BspLI	GGNNCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	374, 549
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	685
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	5 cut(s)	63, 455, 456, 536, 795
BssMI	GATC	5 cut(s)	182, 379, 499, 541, 804
BssT1I	CCWWGG	2 cut(s)	63, 795
Bst2UI	CCWGG	4 cut(s)	457, 537, 614, 842
Bst4CI	ACNGT	2 cut(s)	153, 518
Bst6I	CTCTTC	2 cut(s)	738, 795
BstAPI	GCANNNNNTGC	1 cut(s)	789
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	3 cut(s)	102, 124, 785
BstDEI	CTNAG	3 cut(s)	366, 371, 467
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	608
BstENI	CCTNNNNNAGG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	703
BstKTI	GATC	5 cut(s)	185, 382, 502, 544, 807
BstMAI	GTCTC	5 cut(s)	159, 243, 278, 629, 744
BstMBI	GATC	5 cut(s)	182, 379, 499, 541, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 789
BstNI	CCWGG	4 cut(s)	457, 537, 614, 842
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	4 cut(s)	455, 535, 612, 840
BstSLI	GKGCMC	1 cut(s)	456
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	22, 131
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	6 cut(s)	30, 68, 104, 132, 166, 829
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	4 cut(s)	59, 149, 387, 563
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	102, 124, 785
CaiI	CAGNNNCTG	1 cut(s)	297
CciI	TCATGA	2 cut(s)	247, 496
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	9 cut(s)	64, 197, 248, 262, 335, 354, 419, 497, 621
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	366, 371, 467
DpnI	GATC	5 cut(s)	184, 381, 501, 543, 806
DpnII	GATC	5 cut(s)	182, 379, 499, 541, 804
EaeI	YGGCCR	3 cut(s)	66, 102, 827
Eam1104I	CTCTTC	2 cut(s)	738, 795
EarI	CTCTTC	2 cut(s)	738, 795
Eco130I	CCWWGG	2 cut(s)	63, 795
Eco147I	AGGCCT	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	410
Eco72I	CACGTG	1 cut(s)	695
Eco91I	GGTNACC	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	608
EcoRI	GAATTC	2 cut(s)	141, 253
EcoRII	CCWGG	4 cut(s)	455, 535, 612, 840
EcoRV	GATATC	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	63, 795
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	2 cut(s)	63, 795
Esp3I	CGTCTC	2 cut(s)	243, 744
FaeI	CATG	9 cut(s)	67, 200, 251, 265, 338, 357, 422, 500, 624
FatI	CATG	9 cut(s)	63, 196, 247, 261, 334, 353, 418, 496, 620
FauI	CCCGC	1 cut(s)	392
Fnu4HI	GCNGC	2 cut(s)	36, 120
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	36, 120
GluI	GCNGC	2 cut(s)	36, 120
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	6 cut(s)	30, 68, 104, 132, 166, 829
HapII	CCGG	2 cut(s)	288, 727
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	9 cut(s)	67, 200, 251, 265, 338, 357, 422, 500, 624
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	5 cut(s)	88, 94, 553, 617, 777
HpaII	CCGG	2 cut(s)	288, 727
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	484, 816
Hpy188I	TCNGA	2 cut(s)	93, 514
Hpy188III	TCNNGA	4 cut(s)	248, 281, 497, 740
Hpy8I	GTNNAC	2 cut(s)	484, 816
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	2 cut(s)	153, 518
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	5 cut(s)	308, 437, 692, 714, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 789
HpyF3I	CTNAG	3 cut(s)	366, 371, 467
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	9 cut(s)	67, 200, 251, 265, 338, 357, 422, 500, 624
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	182, 379, 499, 541, 804
Lsp1109I	GCAGC	2 cut(s)	22, 131
LweI	GCATC	2 cut(s)	352, 701
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	2 cut(s)	608, 659
MalI	GATC	5 cut(s)	184, 381, 501, 543, 806
MboI	GATC	5 cut(s)	182, 379, 499, 541, 804
MboII	GAAGA	4 cut(s)	494, 576, 755, 812
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	3 cut(s)	86, 456, 475
MlsI	TGGCCA	3 cut(s)	68, 104, 829
MluCI	AATT	6 cut(s)	24, 141, 203, 253, 445, 575
MluNI	TGGCCA	3 cut(s)	68, 104, 829
MnlI	CCTC	5 cut(s)	213, 216, 504, 739, 748
Mox20I	TGGCCA	3 cut(s)	68, 104, 829
MscI	TGGCCA	3 cut(s)	68, 104, 829
MslI	CAYNNNNRTG	2 cut(s)	246, 657
Msp20I	TGGCCA	3 cut(s)	68, 104, 829
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	2 cut(s)	288, 727
MspR9I	CCNGG	4 cut(s)	457, 537, 614, 842
MvaI	CCWGG	4 cut(s)	457, 537, 614, 842
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	106, 789
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	182, 379, 499, 541, 804
NlaIII	CATG	9 cut(s)	67, 200, 251, 265, 338, 357, 422, 500, 624
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	608, 659
PagI	TCATGA	2 cut(s)	247, 496
PasI	CCCWGGG	1 cut(s)	456
PceI	AGGCCT	1 cut(s)	132
PfeI	GAWTC	5 cut(s)	88, 94, 553, 617, 777
PflMI	CCANNNNNTGG	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	840
PkrI	GCNGC	2 cut(s)	37, 121
PmaCI	CACGTG	1 cut(s)	695
PmlI	CACGTG	1 cut(s)	695
Ppu21I	YACGTR	1 cut(s)	695
Psp6I	CCWGG	4 cut(s)	455, 535, 612, 840
PspCI	CACGTG	1 cut(s)	695
PspEI	GGTNACC	1 cut(s)	608
PspGI	CCWGG	4 cut(s)	455, 535, 612, 840
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	804
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	246, 657
SatI	GCNGC	2 cut(s)	36, 120
Sau3AI	GATC	5 cut(s)	182, 379, 499, 541, 804
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	4 cut(s)	457, 537, 614, 842
SduI	GDGCHC	3 cut(s)	86, 456, 475
SfaNI	GCATC	2 cut(s)	352, 701
SmiMI	CAYNNNNRTG	2 cut(s)	246, 657
SmlI	CTYRAG	2 cut(s)	281, 834
SmoI	CTYRAG	2 cut(s)	281, 834
Sse9I	AATT	6 cut(s)	24, 141, 203, 253, 445, 575
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	385, 703, 781
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	455, 535, 612, 840
StyI	CCWWGG	2 cut(s)	63, 795
TaaI	ACNGT	2 cut(s)	153, 518
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	1 cut(s)	739
TasI	AATT	6 cut(s)	24, 141, 203, 253, 445, 575
TfiI	GAWTC	5 cut(s)	88, 94, 553, 617, 777
TscAI	CASTG	4 cut(s)	59, 156, 394, 563
TseFI	GTSAC	2 cut(s)	608, 659
TseI	GCWGC	2 cut(s)	35, 119
Tsp45I	GTSAC	2 cut(s)	608, 659
TspDTI	ATGAA	3 cut(s)	17, 216, 494
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	4 cut(s)	59, 156, 394, 563
Van91I	CCANNNNNTGG	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	460
XapI	RAATTY	4 cut(s)	141, 203, 253, 575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.