Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004992

Physical Location & Seq

Genomic Coordinates Reverse (-)

21699652 .. 21703314

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1164600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCTACTTTACTTGTTCATAACTTGCCTCTCCCTTGTCTTTTTCTGGAAAGACTTGTCCTTCTTTACCCTCTCCAACTTCGCGAAGCAAGGCATTTCGATTCCCTTCCGCCCTCGAATTCCTTCCAGAATGTCCCTCGTGAGGAAAACTCTATCCCTTTCTTCTTCCAAAGTTGAGAATGTTGACGACTCACTGGAGACGTCTGTGTTGGACTTGCCGGAATTGGTGTTGGAATGCATTCTCGAGAAGCTTCCTCCCGACGCGCTTTTTCGAATGGCGGGTGTTTGTTCTTCTTTGAGGGAGAGATGCAGGAGCGATCACCTTTGGGAGAAGCACATGAAGCAGAAATGGGGCAGAGTGATTGGCCCTGCTGCTTACAGGGAGTGGCGGTGGCATATTGCTTCCAAGACTGATGTGATTGACTTGAAGCAGGGAAAGCAGAAAGGCCTCATGAGAATTCTCTCTCTTGGTTGGCCTTTCTCATGGATCAGATCCAAGGTTGATGATCTCGGAAGCAAGCAGAGGTCTTGTTTGCCAGCTGATTCAATCATGTCTTGGTACCTTGCTCTTGAGACTGGCAGGTTCTGGTTCCCCGCGCAGGTCTATAACCGCGAGAATGGGCATGTTGGTTTTATGTTGTCATGCTACGATGCTGAGCTTAGCTATGATCCCCGCACTGACACCTTCCAAGCCAGGTATCCGCCGCATGGAAGGAGAGCAGTTGCGATTGAGGACGCTGTGCCATGGGAAAGGCTTAGAGCGCCGCCTGTTGACACTCCGGCTCATGATCTTCACGTCTCCGACTGTTTGAATGAGTTGCGGCCCGGTGACCATATAGAGATTCAGTGGAGAAGAAACAAAGAGTTTCCTTATGGTTGGTGGTATGGTGTAGTAGGTCACCTGGAATCGTGTGATGGAAATGAAAATTACTGCCTTTGTCATAATAGTGACACGGTGGCTCTGGAGTTCAACCAGTACACACATGGTTCACGGTGGAGATGCACAAACATCAGCAGAAGAGATCATCGAGAGGAGGGAAATGAGGCAGATGGGTTTTATGGGGGAATCAGGAAGCTCAGAACCAAACAAGAAATTTCCATGTGGAAGCTTCTTTGGCCTACGCAAGTTTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

379

Amino Acids

44.11

Weight (kDa)

8.24

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	70 - 111	7.7e-08	F-box domain
F-box-like	PF12937	70 - 111	2.6e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26850 AT2G26850 AT2G32560 AT2G32560
fragaria_vesca	FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720
malus_domestica	MD03G1164600.v1.1 MD11G1183200.v1.1
prunus_persica	Prupe.4G262500_v2.0.a1 Prupe.4G262500_v2.0.a1
pyrus_communis	pycom06g02450 pycom5153684g00010
rosa_chinensis	RchiOBHm_Chr5g0050291
rosa_laevigata	RLG00000034694
rosa_multiflora	Rmu_sc0000889.1_g000002
rosa_roxburghii	Rroxscaffold_1G00030750
rosa_rugosa	Rorug05G0260000 Rorug05G0260000
rosa_samantha	Rh5AG331400 Rh5BG342000 Rh5CG369300 Rh5DG354900
rosa_wichuraiana	Rw5G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
Acc36I	ACCTGC	2 cut(s)	570, 589
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AccII	CGCG	4 cut(s)	83, 263, 596, 612
AclWI	GGATC	3 cut(s)	486, 494, 662
AcsI	RAATTY	3 cut(s)	117, 456, 1092
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	560, 977
AfiI	CCNNNNNNNGG	3 cut(s)	141, 598, 707
AgsI	TTSAA	4 cut(s)	427, 546, 811, 970
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	2 cut(s)	692, 900
AluBI	AGCT	6 cut(s)	250, 539, 658, 663, 1075, 1108
AluI	AGCT	6 cut(s)	250, 539, 658, 663, 1075, 1108
Alw26I	GTCTC	3 cut(s)	191, 566, 802
AlwI	GGATC	3 cut(s)	486, 494, 662
AlwNI	CAGNNNCTG	1 cut(s)	585
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	5 cut(s)	364, 445, 473, 821, 1115
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	3 cut(s)	117, 456, 1092
Asp700I	GAANNNNTTC	2 cut(s)	121, 237
Asp718I	GGTACC	1 cut(s)	558
AspLEI	GCGC	3 cut(s)	265, 598, 763
AspS9I	GGNCC	2 cut(s)	365, 822
AsuC2I	CCSGG	1 cut(s)	825
AsuHPI	GGTGA	3 cut(s)	311, 839, 890
AsuII	TTCGAA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	2 cut(s)	908, 1043
BciT130I	CCWGG	2 cut(s)	694, 902
BciVI	GTATCC	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	825
BcoDI	GTCTC	3 cut(s)	191, 566, 802
BfoI	RGCGCY	1 cut(s)	764
BfuAI	ACCTGC	2 cut(s)	570, 589
BfuI	GTATCC	1 cut(s)	708
BisI	GCNGC	4 cut(s)	372, 704, 764, 821
BlpI	GCTNAGC	2 cut(s)	654, 659
BlsI	GCNGC	4 cut(s)	373, 705, 765, 822
Bme1390I	CCNGG	3 cut(s)	694, 825, 902
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	2 cut(s)	365, 822
BmiI	GGNNCC	2 cut(s)	560, 590
BmrFI	CCNGG	3 cut(s)	694, 825, 902
BmsI	GCATC	3 cut(s)	296, 640, 989
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	2 cut(s)	215, 983
Bpu1102I	GCTNAGC	2 cut(s)	654, 659
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	495, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 598, 707
Bse1I	ACTGG	3 cut(s)	198, 580, 973
BseBI	CCWGG	2 cut(s)	694, 902
BseDI	CCNNGG	2 cut(s)	495, 743
BseLI	CCNNNNNNNGG	3 cut(s)	141, 598, 707
BseMII	CTCAG	2 cut(s)	645, 1090
BseNI	ACTGG	3 cut(s)	198, 580, 973
BseRI	GAGGAG	1 cut(s)	1046
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	4 cut(s)	83, 263, 596, 612
BshFI	GGCC	5 cut(s)	366, 447, 475, 823, 1117
BshNI	GGYRCC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	218, 779, 825
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	141, 598, 707
BsmAI	GTCTC	3 cut(s)	191, 566, 802
BsmBI	CGTCTC	2 cut(s)	191, 802
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	2 cut(s)	237, 239
BsnI	GGCC	5 cut(s)	366, 447, 475, 823, 1117
BsoBI	CYCGRG	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	271
Bsp143I	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
Bsp1720I	GCTNAGC	2 cut(s)	654, 659
Bsp19I	CCATGG	1 cut(s)	743
Bsp68I	TCGCGA	1 cut(s)	83
BspANI	GGCC	5 cut(s)	366, 447, 475, 823, 1117
BspCNI	CTCAG	2 cut(s)	646, 1089
BspFNI	CGCG	4 cut(s)	83, 263, 596, 612
BspHI	TCATGA	2 cut(s)	450, 784
BspLI	GGNNCC	2 cut(s)	560, 590
BspMI	ACCTGC	2 cut(s)	570, 589
BspPI	GGATC	3 cut(s)	486, 494, 662
BspT104I	TTCGAA	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	558
BsrI	ACTGG	3 cut(s)	198, 580, 973
BssECI	CCNNGG	2 cut(s)	495, 743
BssMI	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
BssNI	GRCGYC	1 cut(s)	200
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	2 cut(s)	495, 743
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	694, 902
Bst4CI	ACNGT	3 cut(s)	806, 955, 993
Bst6I	CTCTTC	1 cut(s)	1012
BstACI	GRCGYC	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	518, 537
BstDEI	CTNAG	4 cut(s)	654, 659, 755, 1076
BstDSI	CCRYGG	1 cut(s)	743
BstEII	GGTNACC	2 cut(s)	827, 896
BstFNI	CGCG	4 cut(s)	83, 263, 596, 612
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	3 cut(s)	265, 598, 763
BstKTI	GATC	7 cut(s)	319, 489, 494, 508, 670, 790, 1024
BstMAI	GTCTC	3 cut(s)	191, 566, 802
BstMBI	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	340, 436, 760, 1114
BstNI	CCWGG	2 cut(s)	694, 902
BstNSI	RCATGY	1 cut(s)	626
BstPI	GGTNACC	2 cut(s)	827, 896
BstSCI	CCNGG	3 cut(s)	692, 823, 900
BstUI	CGCG	4 cut(s)	83, 263, 596, 612
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	708
BsuRI	GGCC	5 cut(s)	366, 447, 475, 823, 1117
BtgI	CCRYGG	1 cut(s)	743
BtrI	CACGTC	1 cut(s)	796
BtsIMutI	CAGTG	3 cut(s)	191, 675, 851
BtuMI	TCGCGA	1 cut(s)	83
BveI	ACCTGC	2 cut(s)	570, 589
Cac8I	GCNNGC	2 cut(s)	518, 537
CaiI	CAGNNNCTG	1 cut(s)	585
CciI	TCATGA	2 cut(s)	450, 784
CfoI	GCGC	3 cut(s)	265, 598, 763
Cfr13I	GGNCC	2 cut(s)	365, 822
CseI	GACGC	2 cut(s)	269, 743
Csp6I	GTAC	2 cut(s)	559, 976
CviQI	GTAC	2 cut(s)	559, 976
DdeI	CTNAG	4 cut(s)	654, 659, 755, 1076
DpnI	GATC	7 cut(s)	318, 488, 493, 507, 669, 789, 1023
DpnII	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
Eam1104I	CTCTTC	1 cut(s)	1012
EarI	CTCTTC	1 cut(s)	1012
EciI	GGCGGA	2 cut(s)	98, 690
Eco130I	CCWWGG	2 cut(s)	495, 743
Eco147I	AGGCCT	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	2 cut(s)	827, 896
EcoO65I	GGTNACC	2 cut(s)	827, 896
EcoRI	GAATTC	2 cut(s)	117, 456
EcoRII	CCWGG	2 cut(s)	692, 900
EcoT14I	CCWWGG	2 cut(s)	495, 743
EcoT22I	ATGCAT	1 cut(s)	239
ErhI	CCWWGG	2 cut(s)	495, 743
Esp3I	CGTCTC	2 cut(s)	191, 802
FaqI	GGGAC	1 cut(s)	118
FauI	CCCGC	3 cut(s)	271, 601, 680
Fnu4HI	GCNGC	4 cut(s)	372, 704, 764, 821
Fsp4HI	GCNGC	4 cut(s)	372, 704, 764, 821
GlaI	GCGC	3 cut(s)	264, 597, 762
GluI	GCNGC	4 cut(s)	372, 704, 764, 821
GsuI	CTGGAG	2 cut(s)	215, 983
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	5 cut(s)	366, 447, 475, 823, 1117
HapII	CCGG	3 cut(s)	218, 779, 825
HgaI	GACGC	2 cut(s)	269, 743
HhaI	GCGC	3 cut(s)	265, 598, 763
Hin1I	GRCGYC	1 cut(s)	200
Hin6I	GCGC	3 cut(s)	263, 596, 761
HinP1I	GCGC	3 cut(s)	263, 596, 761
HincII	GTYRAC	2 cut(s)	184, 772
HindII	GTYRAC	2 cut(s)	184, 772
HindIII	AAGCTT	2 cut(s)	248, 1106
HinfI	GANTC	6 cut(s)	100, 188, 542, 841, 905, 1065
HpaII	CCGG	3 cut(s)	218, 779, 825
HphI	GGTGA	3 cut(s)	311, 839, 890
Hpy166II	GTNNAC	4 cut(s)	184, 772, 978, 989
Hpy188I	TCNGA	4 cut(s)	491, 512, 802, 1079
Hpy8I	GTNNAC	4 cut(s)	184, 772, 978, 989
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	5 cut(s)	70, 115, 132, 694, 705
HpyCH4III	ACNGT	3 cut(s)	806, 955, 993
HpyCH4IV	ACGT	2 cut(s)	200, 795
HpyCH4V	TGCA	3 cut(s)	237, 309, 1002
HpyF10VI	GCNNNNNNNGC	4 cut(s)	340, 436, 760, 1114
HpyF3I	CTNAG	4 cut(s)	654, 659, 755, 1076
HpySE526I	ACGT	2 cut(s)	200, 795
Hsp92I	GRCGYC	1 cut(s)	200
HspAI	GCGC	3 cut(s)	263, 596, 761
KpnI	GGTACC	1 cut(s)	562
Kzo9I	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
LmnI	GCTCC	1 cut(s)	312
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	3 cut(s)	296, 640, 989
MaeII	ACGT	2 cut(s)	200, 795
MaeIII	GTNAC	3 cut(s)	827, 896, 947
MalI	GATC	7 cut(s)	318, 488, 493, 507, 669, 789, 1023
MboI	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
MboII	GAAGA	6 cut(s)	153, 156, 282, 782, 864, 1029
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	5 cut(s)	117, 221, 456, 925, 1092
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	4 cut(s)	99, 189, 210, 825
Mph1103I	ATGCAT	1 cut(s)	239
MroXI	GAANNNNTTC	2 cut(s)	121, 237
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	3 cut(s)	218, 779, 825
MspR9I	CCNGG	3 cut(s)	694, 825, 902
Mva1269I	GAATGC	2 cut(s)	237, 239
MvaI	CCWGG	2 cut(s)	694, 902
MvnI	CGCG	4 cut(s)	83, 263, 596, 612
MwoI	GCNNNNNNNGC	4 cut(s)	340, 436, 760, 1114
NciI	CCSGG	1 cut(s)	825
NcoI	CCATGG	1 cut(s)	743
NdeII	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
NlaIV	GGNNCC	2 cut(s)	560, 590
NmuCI	GTSAC	3 cut(s)	827, 896, 947
NruI	TCGCGA	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	239
NspI	RCATGY	1 cut(s)	626
NspV	TTCGAA	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	242
PagI	TCATGA	2 cut(s)	450, 784
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	2 cut(s)	237, 239
PdmI	GAANNNNTTC	2 cut(s)	121, 237
PfeI	GAWTC	5 cut(s)	100, 542, 841, 905, 1065
PkrI	GCNGC	4 cut(s)	373, 705, 765, 822
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	692, 900
PspEI	GGTNACC	2 cut(s)	827, 896
PspGI	CCWGG	2 cut(s)	692, 900
PspN4I	GGNNCC	2 cut(s)	560, 590
PspPI	GGNCC	2 cut(s)	365, 822
PstNI	CAGNNNCTG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	539
RruI	TCGCGA	1 cut(s)	83
RsaI	GTAC	2 cut(s)	560, 977
RsaNI	GTAC	2 cut(s)	559, 976
RseI	CAYNNNNRTG	1 cut(s)	945
SatI	GCNGC	4 cut(s)	372, 704, 764, 821
Sau3AI	GATC	7 cut(s)	316, 486, 491, 505, 667, 787, 1021
Sau96I	GGNCC	2 cut(s)	365, 822
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	3 cut(s)	694, 825, 902
SfaNI	GCATC	3 cut(s)	296, 640, 989
Sfr274I	CTCGAG	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	2 cut(s)	242, 569
SmoI	CTYRAG	2 cut(s)	242, 569
Sse9I	AATT	5 cut(s)	117, 221, 456, 925, 1092
SseBI	AGGCCT	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	692, 823, 900
StyI	CCWWGG	2 cut(s)	495, 743
TaaI	ACNGT	3 cut(s)	806, 955, 993
TaiI	ACGT	2 cut(s)	203, 798
TaqI	TCGA	5 cut(s)	98, 115, 243, 271, 1027
TasI	AATT	5 cut(s)	117, 221, 456, 925, 1092
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	3 cut(s)	706, 766, 823
TfiI	GAWTC	5 cut(s)	100, 542, 841, 905, 1065
TscAI	CASTG	3 cut(s)	198, 682, 851
TseFI	GTSAC	3 cut(s)	827, 896, 947
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	3 cut(s)	827, 896, 947
TspDTI	ATGAA	3 cut(s)	7, 353, 936
TspRI	CASTG	3 cut(s)	198, 682, 851
XapI	RAATTY	3 cut(s)	117, 456, 1092
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XhoI	CTCGAG	1 cut(s)	242
XmnI	GAANNNNTTC	2 cut(s)	121, 237
ZraI	GACGTC	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.