RLG00000034694

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004992
Physical Location & Seq
Forward (+)
51494076 .. 51496337
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034694

Sequence Viewer

Length: 1059 bp
ATGTCCATAGGAGTAGGGAGTAGGACAACTAGTATCGCAAAACACGATGATGAGATTGATACTGAACAACAGATGTGTGTGTTGGACTTGCCGGAATTGGTGTTGGAATGCATTCTGGAGAGGCTACCTGCCGAGTCCCTTTTCAGAATGAGAGGGGTTTGTACCTCTCTGAGGGAGAGATGTGTGAGTGACCACCTTTGGGAGAAGCACATGAAAAAGAAATGGGGCAGAGTAATTGGCCCTGCTGCTTATAGGGAGTGGCAGTGGCAGTCCATGGCCAATCAAAAGCAGAGCCCGAATCAGAATCAGCTGGCCAAGCCGCAAAAAGCAGCAGGCAAAGGCCTAATGAAAATTCTATCACTGTCTCTTTCTTGGCCTCTGTCGTGGATTAGATCATCCACCGACCATGATGAATTTATCAAAAGCAGGAGGAGGACTTGCTTCCCATCTCATCAGCATGATAATTCTGTCATGTCTTGGTACCTTGCTCTTGAGACCGGCAGGTTCTGGTTTCCTGCACAAGTCTATAACCGAGAGAATGGTCATGTTGGTTTTGTCTTGTCATGCTATGATGCTGAGCTTAGCTATGATCCCCGCACTGACACATTCCAAGCCAGATATCCACCACATGGAAGGAGAGCAATTGCAGTTGAGAATTGTGTGCCCTGGGAAAGGCTTAGAGCACCACCTGTTGACACTTTGCCTCATGATCTTCATATTTCTGACTGTTTGAATGATTTGCGTCCTGGGGATCATATTGAGATTCAGTGGAGAAGAAATAAAGAATTTCCTTATGGTTGGTGGTATGGTGTTGTAGGTCACCTGGAATCATGCGATGGGAATGAGACTTACTGCCTTTGTCATAATAGTGACAATGTGGTGCTGGAGTTCAACCAGTACGCACGTGGTTCGCGGTGGAGATGCACAACAATCAGCCGGAAAAACCATCGAGAAGAGGGAGACGAGGCAGATGGTTTCTACGGGGGAATCCGCAAGCTTTGCACCAAGGAAGAGATTTCCTTGTGGAAGTGTCTTTGGCCAACTCAAGTCCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

353

Amino Acids

41.04

Weight (kDa)

6.91

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 69 1.9e-08 F-box domain
F-box-like PF12937 28 - 69 3.6e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 136, 492
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 629
AccII CGCG 1 cut(s) 913
AciI CCGC 4 cut(s) 320, 595, 913, 991
AclWI GGATC 2 cut(s) 584, 759
AcoI YGGCCR 3 cut(s) 276, 312, 1037
AcsI RAATTY 3 cut(s) 351, 413, 785
AcvI CACGTG 1 cut(s) 905
AfaI GTAC 3 cut(s) 163, 482, 899
AfiI CCNNNNNNNGG 4 cut(s) 171, 199, 629, 672
AgsI TTSAA 2 cut(s) 733, 892
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 4 cut(s) 665, 745, 822, 1050
AluBI AGCT 4 cut(s) 310, 580, 585, 997
AluI AGCT 4 cut(s) 310, 580, 585, 997
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 4 cut(s) 369, 488, 839, 954
AlwI GGATC 2 cut(s) 584, 759
AlwNI CAGNNNCTG 1 cut(s) 507
AoxI GGCC 6 cut(s) 238, 276, 312, 340, 374, 1037
ApeKI GCWGC 2 cut(s) 245, 329
ApoI RAATTY 3 cut(s) 351, 413, 785
Asp700I GAANNNNTTC 1 cut(s) 111
Asp718I GGTACC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 666
BalI TGGCCA 3 cut(s) 278, 314, 1039
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 296
BbrPI CACGTG 1 cut(s) 905
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 2 cut(s) 232, 341
BccI CCATC 4 cut(s) 454, 830, 954, 965
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciT130I CCWGG 4 cut(s) 667, 747, 824, 1052
BcoDI GTCTC 4 cut(s) 369, 488, 839, 954
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 1 cut(s) 30
BfuAI ACCTGC 2 cut(s) 136, 492
BisI GCNGC 3 cut(s) 246, 320, 330
BlpI GCTNAGC 2 cut(s) 576, 581
BlsI GCNGC 3 cut(s) 247, 321, 331
Bme1390I CCNGG 4 cut(s) 667, 747, 824, 1052
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 482
BmrFI CCNGG 4 cut(s) 667, 747, 824, 1052
BmsI GCATC 2 cut(s) 562, 911
BpmI CTGGAG 2 cut(s) 137, 905
Bpu1102I GCTNAGC 2 cut(s) 576, 581
BpuEI CTTGAG 2 cut(s) 512, 1029
BsaAI YACGTR 1 cut(s) 905
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 5 cut(s) 273, 665, 666, 746, 1005
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 199, 629, 672
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 895
BseBI CCWGG 4 cut(s) 667, 747, 824, 1052
BseDI CCNNGG 5 cut(s) 273, 665, 666, 746, 1005
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 4 cut(s) 171, 199, 629, 672
BseMII CTCAG 2 cut(s) 161, 567
BseNI ACTGG 1 cut(s) 895
BseRI GAGGAG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 2 cut(s) 232, 341
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 913
BshFI GGCC 6 cut(s) 240, 278, 314, 342, 376, 1039
BshNI GGYRCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 3 cut(s) 92, 498, 937
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 4 cut(s) 171, 199, 629, 672
BsmAI GTCTC 4 cut(s) 369, 488, 839, 954
BsmBI CGTCTC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 111, 113
BsnI GGCC 6 cut(s) 240, 278, 314, 342, 376, 1039
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 296, 666, 685
Bsp143I GATC 4 cut(s) 392, 589, 709, 751
Bsp1720I GCTNAGC 2 cut(s) 576, 581
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 4 cut(s) 320, 595, 913, 991
BspANI GGCC 6 cut(s) 240, 278, 314, 342, 376, 1039
BspCNI CTCAG 2 cut(s) 162, 568
BspFNI CGCG 1 cut(s) 913
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 1 cut(s) 482
BspMI ACCTGC 2 cut(s) 136, 492
BspPI GGATC 2 cut(s) 584, 759
BspT107I GGYRCC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 1 cut(s) 895
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 5 cut(s) 273, 665, 666, 746, 1005
BssMI GATC 4 cut(s) 392, 589, 709, 751
BssT1I CCWWGG 2 cut(s) 273, 1005
Bst2UI CCWGG 4 cut(s) 667, 747, 824, 1052
Bst4CI ACNGT 2 cut(s) 363, 728
Bst6I CTCTTC 2 cut(s) 948, 1005
BstAPI GCANNNNNTGC 1 cut(s) 999
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 3 cut(s) 312, 334, 995
BstDEI CTNAG 4 cut(s) 170, 576, 581, 677
BstDSI CCRYGG 1 cut(s) 273
BstEII GGTNACC 1 cut(s) 818
BstENI CCTNNNNNAGG 2 cut(s) 169, 670
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 913
BstKTI GATC 4 cut(s) 395, 592, 712, 754
BstMAI GTCTC 4 cut(s) 369, 488, 839, 954
BstMBI GATC 4 cut(s) 392, 589, 709, 751
BstMWI GCNNNNNNNGC 2 cut(s) 316, 999
BstNI CCWGG 4 cut(s) 667, 747, 824, 1052
BstPI GGTNACC 1 cut(s) 818
BstSCI CCNGG 4 cut(s) 665, 745, 822, 1050
BstSLI GKGCMC 1 cut(s) 666
BstUI CGCG 1 cut(s) 913
BstV1I GCAGC 2 cut(s) 232, 341
BsuRI GGCC 6 cut(s) 240, 278, 314, 342, 376, 1039
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 849
BtsCI GGATG 1 cut(s) 395
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 4 cut(s) 269, 359, 597, 773
BveI ACCTGC 2 cut(s) 136, 492
Cac8I GCNNGC 3 cut(s) 312, 334, 995
CaiI CAGNNNCTG 1 cut(s) 507
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 731
Csp6I GTAC 3 cut(s) 162, 481, 898
CviQI GTAC 3 cut(s) 162, 481, 898
DdeI CTNAG 4 cut(s) 170, 576, 581, 677
DpnI GATC 4 cut(s) 394, 591, 711, 753
DpnII GATC 4 cut(s) 392, 589, 709, 751
EaeI YGGCCR 3 cut(s) 276, 312, 1037
Eam1104I CTCTTC 2 cut(s) 948, 1005
EarI CTCTTC 2 cut(s) 948, 1005
Eco130I CCWWGG 2 cut(s) 273, 1005
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 488
Eco32I GATATC 1 cut(s) 620
Eco72I CACGTG 1 cut(s) 905
Eco91I GGTNACC 1 cut(s) 818
EcoNI CCTNNNNNAGG 2 cut(s) 169, 670
EcoO65I GGTNACC 1 cut(s) 818
EcoRII CCWGG 4 cut(s) 665, 745, 822, 1050
EcoRV GATATC 1 cut(s) 620
EcoT14I CCWWGG 2 cut(s) 273, 1005
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 273, 1005
Esp3I CGTCTC 1 cut(s) 954
FaqI GGGAC 1 cut(s) 121
FauI CCCGC 1 cut(s) 602
Fnu4HI GCNGC 3 cut(s) 246, 320, 330
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 246, 320, 330
FspBI CTAG 1 cut(s) 30
GluI GCNGC 3 cut(s) 246, 320, 330
GsuI CTGGAG 2 cut(s) 137, 905
HaeIII GGCC 6 cut(s) 240, 278, 314, 342, 376, 1039
HapII CCGG 3 cut(s) 92, 498, 937
HgaI GACGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 6 cut(s) 134, 298, 304, 763, 827, 987
HpaII CCGG 3 cut(s) 92, 498, 937
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 4 cut(s) 146, 171, 303, 724
Hpy188III TCNNGA 4 cut(s) 116, 491, 707, 950
Hpy8I GTNNAC 1 cut(s) 694
HpyAV CCTTC 1 cut(s) 627
HpyCH4III ACNGT 2 cut(s) 363, 728
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 5 cut(s) 111, 518, 647, 924, 1002
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 999
HpyF3I CTNAG 4 cut(s) 170, 576, 581, 677
HpySE526I ACGT 1 cut(s) 904
KpnI GGTACC 1 cut(s) 484
Kzo9I GATC 4 cut(s) 392, 589, 709, 751
Lsp1109I GCAGC 2 cut(s) 232, 341
LweI GCATC 2 cut(s) 562, 911
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 3 cut(s) 188, 818, 869
MalI GATC 4 cut(s) 394, 591, 711, 753
MboI GATC 4 cut(s) 392, 589, 709, 751
MboII GAAGA 4 cut(s) 704, 786, 965, 1022
MfeI CAATTG 1 cut(s) 642
MhlI GDGCHC 3 cut(s) 296, 666, 685
MlsI TGGCCA 3 cut(s) 278, 314, 1039
MluCI AATT 8 cut(s) 95, 234, 351, 413, 463, 642, 655, 785
MluNI TGGCCA 3 cut(s) 278, 314, 1039
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 63, 84
Mox20I TGGCCA 3 cut(s) 278, 314, 1039
Mph1103I ATGCAT 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 3 cut(s) 278, 314, 1039
MslI CAYNNNNRTG 3 cut(s) 48, 456, 867
Msp20I TGGCCA 3 cut(s) 278, 314, 1039
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 3 cut(s) 92, 498, 937
MspR9I CCNGG 4 cut(s) 667, 747, 824, 1052
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 2 cut(s) 111, 113
MvaI CCWGG 4 cut(s) 667, 747, 824, 1052
MvnI CGCG 1 cut(s) 913
MwoI GCNNNNNNNGC 2 cut(s) 316, 999
NcoI CCATGG 1 cut(s) 273
NdeII GATC 4 cut(s) 392, 589, 709, 751
NlaIV GGNNCC 1 cut(s) 482
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 3 cut(s) 188, 818, 869
NsiI ATGCAT 1 cut(s) 113
PagI TCATGA 1 cut(s) 706
PasI CCCWGGG 1 cut(s) 666
PceI AGGCCT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 2 cut(s) 111, 113
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 5 cut(s) 298, 304, 763, 827, 987
PflMI CCANNNNNTGG 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 1050
PkrI GCNGC 3 cut(s) 247, 321, 331
PleI GAGTC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 905
PmlI CACGTG 1 cut(s) 905
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 905
Psp6I CCWGG 4 cut(s) 665, 745, 822, 1050
PspCI CACGTG 1 cut(s) 905
PspEI GGTNACC 1 cut(s) 818
PspGI CCWGG 4 cut(s) 665, 745, 822, 1050
PspN4I GGNNCC 1 cut(s) 482
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 507
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 3 cut(s) 163, 482, 899
RsaNI GTAC 3 cut(s) 162, 481, 898
RseI CAYNNNNRTG 3 cut(s) 48, 456, 867
SatI GCNGC 3 cut(s) 246, 320, 330
Sau3AI GATC 4 cut(s) 392, 589, 709, 751
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 667, 747, 824, 1052
SduI GDGCHC 3 cut(s) 296, 666, 685
SfaNI GCATC 2 cut(s) 562, 911
SmiMI CAYNNNNRTG 3 cut(s) 48, 456, 867
SmlI CTYRAG 2 cut(s) 491, 1044
SmoI CTYRAG 2 cut(s) 491, 1044
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 8 cut(s) 95, 234, 351, 413, 463, 642, 655, 785
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 4 cut(s) 320, 595, 913, 991
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 4 cut(s) 665, 745, 822, 1050
StyI CCWWGG 2 cut(s) 273, 1005
TaaI ACNGT 2 cut(s) 363, 728
TaiI ACGT 1 cut(s) 907
TaqI TCGA 1 cut(s) 949
TasI AATT 8 cut(s) 95, 234, 351, 413, 463, 642, 655, 785
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 5 cut(s) 298, 304, 763, 827, 987
TscAI CASTG 4 cut(s) 269, 366, 604, 773
TseFI GTSAC 3 cut(s) 188, 818, 869
TseI GCWGC 2 cut(s) 245, 329
Tsp45I GTSAC 3 cut(s) 188, 818, 869
TspDTI ATGAA 4 cut(s) 227, 362, 426, 704
TspRI CASTG 4 cut(s) 269, 366, 604, 773
Van91I CCANNNNNTGG 1 cut(s) 629
XagI CCTNNNNNAGG 2 cut(s) 169, 670
XapI RAATTY 3 cut(s) 351, 413, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.