Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000889.1

Orthogroup ID

OG0004992

Physical Location & Seq

Genomic Coordinates Reverse (-)

5865 .. 8080

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000889.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgtcaatgtccataggagtagggagtaggacaactagtatcgcaaaacacgatgatgtgattaatactgaacaacagatgtgtgtgttggacttgccagaattggtgttggaatgcattctggagaggctacctgccgagtcccttttcagaatgagaggggtttgtacctctctgagggagagatgtgtgagtgaccacctttgggagaagcacatgaaaaagaaatggggcagagtaattggccctgctgcttatagggagtggcagtggcaatccatggccaatcaaaagcagagcccgaatcagaatcagctggccaagccgcaaaaagcagcaggcaaaggcctaatgagaattctatcactgtctctttcttggcctttgtcgtggattagatcatccagcgaccatgatgaatttatcaaaagcaggaggaggacttgcttcccgtctcatcagcatgagaattctatcatgtcttggtaccttgctcttgagaccggcaggttctggtttcctgcacaagtctataaccgagagaatggtcatgttggttttgtcttgtcatgctatgatgctgagcttagctatgatccccgcactgacacattccaagccagatatccaccacatggaaggagagcagttgcagttgagaattgtgtgccctgggaaaggcttagagcaccacctgttgacacttcgcctcatgatcttcatatctctgactgtttgaatgatttgcgtcctggggatcatattgagattcagtggagaagaaataaagaatttccttatggttggtggtatggtgttgtaggtcacctggaatcatgtgatgggaatgcgacttactgcctttgtcataatagtgacaatgtggtcctggagttcaaccagtacgcacgtggttcgcggtggagatgcacaacaatcagccgggaaaaccatcgagaagagggtgacgaggcagatggtttctacgggggaatacgcaagctttgcaccaaggaagagatctccgtgtggaagtgtctttggccaactcaagtcctggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

354

Amino Acids

41.16

Weight (kDa)

7.2

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26850 AT2G26850 AT2G32560 AT2G32560
fragaria_vesca	FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720 FvH4_3g27720
malus_domestica	MD03G1164600.v1.1 MD11G1183200.v1.1
prunus_persica	Prupe.4G262500_v2.0.a1 Prupe.4G262500_v2.0.a1
pyrus_communis	pycom06g02450 pycom5153684g00010
rosa_chinensis	RchiOBHm_Chr5g0050291
rosa_laevigata	RLG00000034694
rosa_multiflora	Rmu_sc0000889.1_g000002
rosa_roxburghii	Rroxscaffold_1G00030750
rosa_rugosa	Rorug05G0260000 Rorug05G0260000
rosa_samantha	Rh5AG331400 Rh5BG342000 Rh5CG369300 Rh5DG354900
rosa_wichuraiana	Rw5G031320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	884
Acc36I	ACCTGC	2 cut(s)	142, 498
Acc65I	GGTACC	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccII	CGCG	1 cut(s)	919
AciI	CCGC	3 cut(s)	326, 601, 919
AclWI	GGATC	2 cut(s)	590, 765
AcoI	YGGCCR	3 cut(s)	282, 318, 1043
AcsI	RAATTY	4 cut(s)	357, 419, 469, 791
AcvI	CACGTG	1 cut(s)	911
AfaI	GTAC	3 cut(s)	169, 488, 905
AfiI	CCNNNNNNNGG	4 cut(s)	177, 205, 635, 678
AgsI	TTSAA	2 cut(s)	739, 898
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	5 cut(s)	671, 751, 828, 888, 1056
AluBI	AGCT	4 cut(s)	316, 586, 591, 1003
AluI	AGCT	4 cut(s)	316, 586, 591, 1003
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	3 cut(s)	375, 459, 494
AlwI	GGATC	2 cut(s)	590, 765
AlwNI	CAGNNNCTG	1 cut(s)	513
AoxI	GGCC	6 cut(s)	244, 282, 318, 346, 380, 1043
ApeKI	GCWGC	2 cut(s)	251, 335
ApoI	RAATTY	4 cut(s)	357, 419, 469, 791
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	245, 886
AsuC2I	CCSGG	1 cut(s)	944
AsuHPI	GGTGA	2 cut(s)	818, 977
AvaII	GGWCC	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	672
BalI	TGGCCA	3 cut(s)	284, 320, 1045
BanI	GGYRCC	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	911
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	2 cut(s)	238, 347
BccI	CCATC	3 cut(s)	836, 960, 971
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciT130I	CCWGG	5 cut(s)	673, 753, 830, 890, 1058
BcnI	CCSGG	1 cut(s)	944
BcoDI	GTCTC	3 cut(s)	375, 459, 494
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfuAI	ACCTGC	2 cut(s)	142, 498
BglII	AGATCT	1 cut(s)	1020
BisI	GCNGC	3 cut(s)	252, 326, 336
BlpI	GCTNAGC	2 cut(s)	582, 587
BlsI	GCNGC	3 cut(s)	253, 327, 337
Bme1390I	CCNGG	6 cut(s)	673, 753, 830, 890, 944, 1058
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	2 cut(s)	245, 886
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	6 cut(s)	673, 753, 830, 890, 944, 1058
BmsI	GCATC	2 cut(s)	568, 917
BpmI	CTGGAG	2 cut(s)	143, 911
Bpu1102I	GCTNAGC	2 cut(s)	582, 587
BpuEI	CTTGAG	2 cut(s)	518, 1035
BpuMI	CCSGG	1 cut(s)	944
BsaAI	YACGTR	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	5 cut(s)	279, 671, 672, 752, 1011
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 205, 635, 678
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	901
BseBI	CCWGG	5 cut(s)	673, 753, 830, 890, 1058
BseDI	CCNNGG	5 cut(s)	279, 671, 672, 752, 1011
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	4 cut(s)	177, 205, 635, 678
BseMII	CTCAG	2 cut(s)	167, 573
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	2 cut(s)	238, 347
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	919
BshFI	GGCC	6 cut(s)	246, 284, 320, 348, 382, 1045
BshNI	GGYRCC	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	2 cut(s)	504, 943
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	4 cut(s)	177, 205, 635, 678
BsmAI	GTCTC	3 cut(s)	375, 459, 494
BsmBI	CGTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	3 cut(s)	117, 119, 853
BsnI	GGCC	6 cut(s)	246, 284, 320, 348, 382, 1045
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	302, 672, 691
Bsp143I	GATC	5 cut(s)	398, 595, 715, 757, 1020
Bsp1720I	GCTNAGC	2 cut(s)	582, 587
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	3 cut(s)	326, 601, 919
BspANI	GGCC	6 cut(s)	246, 284, 320, 348, 382, 1045
BspCNI	CTCAG	2 cut(s)	168, 574
BspFNI	CGCG	1 cut(s)	919
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	488
BspMI	ACCTGC	2 cut(s)	142, 498
BspPI	GGATC	2 cut(s)	590, 765
BspT107I	GGYRCC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	901
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	5 cut(s)	279, 671, 672, 752, 1011
BssMI	GATC	5 cut(s)	398, 595, 715, 757, 1020
BssT1I	CCWWGG	2 cut(s)	279, 1011
Bst2UI	CCWGG	5 cut(s)	673, 753, 830, 890, 1058
Bst4CI	ACNGT	2 cut(s)	369, 734
Bst6I	CTCTTC	2 cut(s)	954, 1011
BstAPI	GCANNNNNTGC	1 cut(s)	1005
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	3 cut(s)	318, 340, 1001
BstDEI	CTNAG	4 cut(s)	176, 582, 587, 683
BstDSI	CCRYGG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	824
BstENI	CCTNNNNNAGG	2 cut(s)	175, 676
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	919
BstKTI	GATC	5 cut(s)	401, 598, 718, 760, 1023
BstMAI	GTCTC	3 cut(s)	375, 459, 494
BstMBI	GATC	5 cut(s)	398, 595, 715, 757, 1020
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 1005
BstNI	CCWGG	5 cut(s)	673, 753, 830, 890, 1058
BstPI	GGTNACC	1 cut(s)	824
BstSCI	CCNGG	6 cut(s)	671, 751, 828, 888, 942, 1056
BstSLI	GKGCMC	1 cut(s)	672
BstUI	CGCG	1 cut(s)	919
BstV1I	GCAGC	2 cut(s)	238, 347
BstX2I	RGATCY	1 cut(s)	1020
BstYI	RGATCY	1 cut(s)	1020
BsuRI	GGCC	6 cut(s)	246, 284, 320, 348, 382, 1045
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	4 cut(s)	275, 365, 603, 779
BveI	ACCTGC	2 cut(s)	142, 498
Cac8I	GCNNGC	3 cut(s)	318, 340, 1001
CaiI	CAGNNNCTG	1 cut(s)	513
CciI	TCATGA	1 cut(s)	712
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	245, 886
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	168, 487, 904
CviQI	GTAC	3 cut(s)	168, 487, 904
DdeI	CTNAG	4 cut(s)	176, 582, 587, 683
DpnI	GATC	5 cut(s)	400, 597, 717, 759, 1022
DpnII	GATC	5 cut(s)	398, 595, 715, 757, 1020
DrdI	GACNNNNNNGTC	1 cut(s)	884
DseDI	GACNNNNNNGTC	1 cut(s)	884
EaeI	YGGCCR	3 cut(s)	282, 318, 1043
Eam1104I	CTCTTC	2 cut(s)	954, 1011
EarI	CTCTTC	2 cut(s)	954, 1011
Eco130I	CCWWGG	2 cut(s)	279, 1011
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	494
Eco32I	GATATC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	886
Eco72I	CACGTG	1 cut(s)	911
Eco91I	GGTNACC	1 cut(s)	824
EcoNI	CCTNNNNNAGG	2 cut(s)	175, 676
EcoO65I	GGTNACC	1 cut(s)	824
EcoRI	GAATTC	2 cut(s)	357, 469
EcoRII	CCWGG	5 cut(s)	671, 751, 828, 888, 1056
EcoRV	GATATC	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	279, 1011
EcoT22I	ATGCAT	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	279, 1011
Esp3I	CGTCTC	1 cut(s)	459
FaqI	GGGAC	1 cut(s)	127
FauI	CCCGC	1 cut(s)	608
Fnu4HI	GCNGC	3 cut(s)	252, 326, 336
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	252, 326, 336
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	3 cut(s)	252, 326, 336
GsuI	CTGGAG	2 cut(s)	143, 911
HaeIII	GGCC	6 cut(s)	246, 284, 320, 348, 382, 1045
HapII	CCGG	2 cut(s)	504, 943
HgaI	GACGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	5 cut(s)	140, 304, 310, 769, 833
HpaII	CCGG	2 cut(s)	504, 943
HphI	GGTGA	2 cut(s)	818, 977
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	4 cut(s)	152, 177, 309, 730
Hpy188III	TCNNGA	4 cut(s)	122, 497, 713, 956
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	1 cut(s)	633
HpyCH4III	ACNGT	2 cut(s)	369, 734
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	5 cut(s)	117, 524, 653, 930, 1008
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 1005
HpyF3I	CTNAG	4 cut(s)	176, 582, 587, 683
HpySE526I	ACGT	1 cut(s)	910
KpnI	GGTACC	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	398, 595, 715, 757, 1020
Lsp1109I	GCAGC	2 cut(s)	238, 347
LweI	GCATC	2 cut(s)	568, 917
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	4 cut(s)	194, 824, 875, 965
MalI	GATC	5 cut(s)	400, 597, 717, 759, 1022
MboI	GATC	5 cut(s)	398, 595, 715, 757, 1020
MboII	GAAGA	4 cut(s)	710, 792, 971, 1028
MflI	RGATCY	1 cut(s)	1020
MhlI	GDGCHC	3 cut(s)	302, 672, 691
MlsI	TGGCCA	3 cut(s)	284, 320, 1045
MluCI	AATT	7 cut(s)	101, 240, 357, 419, 469, 661, 791
MluNI	TGGCCA	3 cut(s)	284, 320, 1045
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	69, 90
MnlI	CCTC	9 cut(s)	120, 152, 171, 181, 429, 432, 720, 955, 964
Mox20I	TGGCCA	3 cut(s)	284, 320, 1045
Mph1103I	ATGCAT	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	117
MscI	TGGCCA	3 cut(s)	284, 320, 1045
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	3 cut(s)	54, 462, 873
Msp20I	TGGCCA	3 cut(s)	284, 320, 1045
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	2 cut(s)	504, 943
MspR9I	CCNGG	6 cut(s)	673, 753, 830, 890, 944, 1058
Mva1269I	GAATGC	3 cut(s)	117, 119, 853
MvaI	CCWGG	5 cut(s)	673, 753, 830, 890, 1058
MvnI	CGCG	1 cut(s)	919
MwoI	GCNNNNNNNGC	2 cut(s)	322, 1005
NciI	CCSGG	1 cut(s)	944
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	398, 595, 715, 757, 1020
NlaIV	GGNNCC	1 cut(s)	488
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	4 cut(s)	194, 824, 875, 965
NsiI	ATGCAT	1 cut(s)	119
PagI	TCATGA	1 cut(s)	712
PasI	CCCWGGG	1 cut(s)	672
PceI	AGGCCT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	3 cut(s)	117, 119, 853
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	304, 310, 769, 833
PflMI	CCANNNNNTGG	1 cut(s)	635
PfoI	TCCNGGA	2 cut(s)	888, 1056
PkrI	GCNGC	3 cut(s)	253, 327, 337
PleI	GAGTC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	911
PshBI	ATTAAT	1 cut(s)	63
Psp6I	CCWGG	5 cut(s)	671, 751, 828, 888, 1056
PspCI	CACGTG	1 cut(s)	911
PspEI	GGTNACC	1 cut(s)	824
PspGI	CCWGG	5 cut(s)	671, 751, 828, 888, 1056
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	245, 886
PstNI	CAGNNNCTG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	1020
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	3 cut(s)	169, 488, 905
RsaNI	GTAC	3 cut(s)	168, 487, 904
RseI	CAYNNNNRTG	3 cut(s)	54, 462, 873
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	3 cut(s)	252, 326, 336
Sau3AI	GATC	5 cut(s)	398, 595, 715, 757, 1020
Sau96I	GGNCC	2 cut(s)	245, 886
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	6 cut(s)	673, 753, 830, 890, 944, 1058
SduI	GDGCHC	3 cut(s)	302, 672, 691
SfaNI	GCATC	2 cut(s)	568, 917
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	3 cut(s)	54, 462, 873
SmlI	CTYRAG	2 cut(s)	497, 1050
SmoI	CTYRAG	2 cut(s)	497, 1050
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	7 cut(s)	101, 240, 357, 419, 469, 661, 791
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	3 cut(s)	326, 601, 919
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	6 cut(s)	671, 751, 828, 888, 942, 1056
StyI	CCWWGG	2 cut(s)	279, 1011
TaaI	ACNGT	2 cut(s)	369, 734
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	1 cut(s)	955
TasI	AATT	7 cut(s)	101, 240, 357, 419, 469, 661, 791
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	4 cut(s)	304, 310, 769, 833
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	4 cut(s)	275, 372, 610, 779
TseFI	GTSAC	4 cut(s)	194, 824, 875, 965
TseI	GCWGC	2 cut(s)	251, 335
Tsp45I	GTSAC	4 cut(s)	194, 824, 875, 965
TspDTI	ATGAA	3 cut(s)	233, 432, 710
TspGWI	ACGGA	1 cut(s)	1015
TspRI	CASTG	4 cut(s)	275, 372, 610, 779
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	886
VspI	ATTAAT	1 cut(s)	63
XagI	CCTNNNNNAGG	2 cut(s)	175, 676
XapI	RAATTY	4 cut(s)	357, 419, 469, 791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.