Rh5AG331400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004992
Physical Location & Seq
Forward (+)
52794548 .. 52797533
2986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG331400.1

Sequence Viewer

Length: 1239 bp
ATGCTACTATACTTTTTCATTACTTGCCTCTCACTCCTCTTTTTCAAGAGTTTTCCTGTCAAGTCTCTCCCACTCCCACCATGGGTTTTTGAGGCCCAATTATTGTTCTCCTCGAAAATCAAAAGCCTTGTTTCAATTGGTTTTCTTTCTCAAACTCATTCCGCAAGGTCTATGTCAATGTCCATAGGAGTAGGGAGTAGGACAACTAGGATCGCAAAACACGATGATGAGATTAATACTGAACAACAGATGTGTGTGTTGGACTTGCCAGAATTGGTGTTGGAATGCATTCTGGAGAGGCTACCTGCCGAGTCCCTTTTCAGAATGAGAGGGGTTTGTACCTCTCTGAGGGAGAGATGTGTGAGTGACCACCTTTGGGAGAAGCACATGAAAAAGAAATGGGGCAGAGTAATTGGCCCTGCTGCTTATAGGGAGTGGCAGTGGCAATCCATGGCCAATCAAAAGCAGAGCCCGAATCAGAATCAGCTTTCCAAGCCGCAAAAAGCAGCAGCAGGCAAAGGCCTAATGAGAATTCTATCACTGTCTCTTTCTTGGCCTTTGTCGTGGATTAGATCATCCAGCGACCATGATGAATTTATCAAAAGCAGGAGGAGGACTTGCTTCCCGTCTCATCAGCATGAGAATTCTATCATGTCTTGGTACCTTGCTCTTGAGACAGGCAGGTTCTGGTTTCCTGCACAAGTCTATAACCGAGAGAATGGTCATGTTGGTTTTGTCTTGTCATGCTATGATGCTGAGCTTAGCTATGATCCCTGCACTGACACATTCCAAGCCAGATATCCACCACATGGAAGGAGAGCAGTTGCAGTTGAGAATTGTGTGCCCTGGGAAAGGCTTAGAGCACCACCTGTTGACACTTCGCCTCATGATCTTCATATCTCTGACTGTTTGAATGATTTGCGTCCTGGGGATCATATTGAGATTCAGTGGAGAAGAAATAAAGAATTTCCTTATGGTTGGTGGTATGGTGTTGTAGGTCACCTGGAATCATGTGATGGGAATGCGACTTACTGCCTTTGTCATAATAGTGACAATGTGGTCCTGGAGTTCAACCAGTACGCACGTGGTTCGCGGTGGAGATGCACAACAATCAGCCGGAAAAACCATCGAGAAGAGGGAGACGAGGCAGATGGTTTCTACGGGGGAATCCGCAAGCTTTGCACCAAGGAAGAGATCTCCGTGTGGAAGTGTCTTTGGCCAACTCAAGTCCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

412

Amino Acids

47.79

Weight (kDa)

8.42

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 87 - 128 2.3e-08 F-box domain
F-box-like PF12937 87 - 128 4.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1058
Acc36I ACCTGC 2 cut(s) 313, 672
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 809
AccII CGCG 1 cut(s) 1093
AciI CCGC 4 cut(s) 162, 497, 1093, 1171
AclWI GGATC 3 cut(s) 218, 764, 939
AcoI YGGCCR 2 cut(s) 453, 1217
AcsI RAATTY 4 cut(s) 531, 593, 643, 965
AcvI CACGTG 1 cut(s) 1085
AfaI GTAC 3 cut(s) 340, 662, 1079
AfiI CCNNNNNNNGG 5 cut(s) 82, 348, 376, 809, 852
AgsI TTSAA 4 cut(s) 46, 135, 913, 1072
AjnI CCWGG 5 cut(s) 845, 925, 1002, 1062, 1230
AluBI AGCT 4 cut(s) 487, 760, 765, 1177
AluI AGCT 4 cut(s) 487, 760, 765, 1177
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 5 cut(s) 69, 549, 633, 668, 1134
AlwI GGATC 3 cut(s) 218, 764, 939
AlwNI CAGNNNCTG 1 cut(s) 687
AoxI GGCC 6 cut(s) 93, 415, 453, 520, 554, 1217
ApeKI GCWGC 3 cut(s) 422, 506, 509
ApoI RAATTY 4 cut(s) 531, 593, 643, 965
AseI ATTAAT 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 660
AspS9I GGNCC 3 cut(s) 94, 416, 1060
AsuHPI GGTGA 1 cut(s) 992
AvaII GGWCC 1 cut(s) 1060
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 2 cut(s) 455, 1219
BanI GGYRCC 1 cut(s) 660
BanII GRGCYC 1 cut(s) 473
BbrPI CACGTG 1 cut(s) 1085
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 3 cut(s) 409, 518, 521
BccI CCATC 3 cut(s) 1010, 1134, 1145
BcgI CGANNNNNNTGC 2 cut(s) 1071, 1105
BciT130I CCWGG 5 cut(s) 847, 927, 1004, 1064, 1232
BcoDI GTCTC 5 cut(s) 69, 549, 633, 668, 1134
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 2 cut(s) 313, 672
BglII AGATCT 1 cut(s) 1194
BisI GCNGC 4 cut(s) 423, 497, 507, 510
BlpI GCTNAGC 2 cut(s) 756, 761
BlsI GCNGC 4 cut(s) 424, 498, 508, 511
Bme1390I CCNGG 5 cut(s) 847, 927, 1004, 1064, 1232
Bme18I GGWCC 1 cut(s) 1060
BmgT120I GGNCC 3 cut(s) 94, 416, 1060
BmiI GGNNCC 1 cut(s) 662
BmrFI CCNGG 5 cut(s) 847, 927, 1004, 1064, 1232
BmsI GCATC 2 cut(s) 742, 1091
BpmI CTGGAG 2 cut(s) 314, 1085
Bpu1102I GCTNAGC 2 cut(s) 756, 761
BpuEI CTTGAG 2 cut(s) 692, 1209
BsaAI YACGTR 1 cut(s) 1085
BsaJI CCNNGG 6 cut(s) 80, 450, 845, 846, 926, 1185
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 348, 376, 809, 852
Bse1I ACTGG 1 cut(s) 1075
BseBI CCWGG 5 cut(s) 847, 927, 1004, 1064, 1232
BseDI CCNNGG 6 cut(s) 80, 450, 845, 846, 926, 1185
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 5 cut(s) 82, 348, 376, 809, 852
BseMII CTCAG 2 cut(s) 338, 747
BseNI ACTGG 1 cut(s) 1075
BseRI GAGGAG 3 cut(s) 26, 100, 625
BseSI GKGCMC 1 cut(s) 846
BseXI GCAGC 3 cut(s) 409, 518, 521
BsgI GTGCAG 2 cut(s) 681, 760
Bsh1236I CGCG 1 cut(s) 1093
BshFI GGCC 6 cut(s) 95, 417, 455, 522, 556, 1219
BshNI GGYRCC 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 865
BsiSI CCGG 1 cut(s) 1117
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 5 cut(s) 82, 348, 376, 809, 852
BsmAI GTCTC 5 cut(s) 69, 549, 633, 668, 1134
BsmBI CGTCTC 2 cut(s) 633, 1134
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 3 cut(s) 288, 290, 1027
BsnI GGCC 6 cut(s) 95, 417, 455, 522, 556, 1219
Bsp1286I GDGCHC 3 cut(s) 473, 846, 865
Bsp143I GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
Bsp1720I GCTNAGC 2 cut(s) 756, 761
Bsp19I CCATGG 2 cut(s) 80, 450
BspACI CCGC 4 cut(s) 162, 497, 1093, 1171
BspANI GGCC 6 cut(s) 95, 417, 455, 522, 556, 1219
BspCNI CTCAG 2 cut(s) 339, 748
BspFNI CGCG 1 cut(s) 1093
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 1 cut(s) 662
BspMI ACCTGC 2 cut(s) 313, 672
BspPI GGATC 3 cut(s) 218, 764, 939
BspT107I GGYRCC 1 cut(s) 660
BsrI ACTGG 1 cut(s) 1075
BssECI CCNNGG 6 cut(s) 80, 450, 845, 846, 926, 1185
BssMI GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
BssT1I CCWWGG 3 cut(s) 80, 450, 1185
Bst2UI CCWGG 5 cut(s) 847, 927, 1004, 1064, 1232
Bst4CI ACNGT 2 cut(s) 543, 908
Bst6I CTCTTC 2 cut(s) 1128, 1185
BstAPI GCANNNNNTGC 1 cut(s) 1179
BstBAI YACGTR 1 cut(s) 1085
BstC8I GCNNGC 2 cut(s) 514, 1175
BstDEI CTNAG 4 cut(s) 347, 756, 761, 857
BstDSI CCRYGG 2 cut(s) 80, 450
BstEII GGTNACC 1 cut(s) 998
BstENI CCTNNNNNAGG 2 cut(s) 346, 850
BstF5I GGATG 1 cut(s) 575
BstFNI CGCG 1 cut(s) 1093
BstKTI GATC 6 cut(s) 213, 575, 772, 892, 934, 1197
BstMAI GTCTC 5 cut(s) 69, 549, 633, 668, 1134
BstMBI GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
BstMWI GCNNNNNNNGC 2 cut(s) 493, 1179
BstNI CCWGG 5 cut(s) 847, 927, 1004, 1064, 1232
BstPI GGTNACC 1 cut(s) 998
BstSCI CCNGG 5 cut(s) 845, 925, 1002, 1062, 1230
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 1093
BstV1I GCAGC 3 cut(s) 409, 518, 521
BstX2I RGATCY 1 cut(s) 1194
BstYI RGATCY 1 cut(s) 1194
BsuRI GGCC 6 cut(s) 95, 417, 455, 522, 556, 1219
BtgI CCRYGG 2 cut(s) 80, 450
BtsCI GGATG 1 cut(s) 575
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 4 cut(s) 446, 539, 777, 953
BveI ACCTGC 2 cut(s) 313, 672
Cac8I GCNNGC 2 cut(s) 514, 1175
CaiI CAGNNNCTG 1 cut(s) 687
CciI TCATGA 1 cut(s) 886
Cfr13I GGNCC 3 cut(s) 94, 416, 1060
CseI GACGC 1 cut(s) 911
Csp6I GTAC 3 cut(s) 339, 661, 1078
CviQI GTAC 3 cut(s) 339, 661, 1078
DdeI CTNAG 4 cut(s) 347, 756, 761, 857
DpnI GATC 6 cut(s) 212, 574, 771, 891, 933, 1196
DpnII GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
DrdI GACNNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 1058
EaeI YGGCCR 2 cut(s) 453, 1217
Eam1104I CTCTTC 2 cut(s) 1128, 1185
EarI CTCTTC 2 cut(s) 1128, 1185
Eco130I CCWWGG 3 cut(s) 80, 450, 1185
Eco147I AGGCCT 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 473
Eco32I GATATC 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 1060
Eco72I CACGTG 1 cut(s) 1085
Eco91I GGTNACC 1 cut(s) 998
EcoNI CCTNNNNNAGG 2 cut(s) 346, 850
EcoO65I GGTNACC 1 cut(s) 998
EcoRI GAATTC 2 cut(s) 531, 643
EcoRII CCWGG 5 cut(s) 845, 925, 1002, 1062, 1230
EcoRV GATATC 1 cut(s) 800
EcoT14I CCWWGG 3 cut(s) 80, 450, 1185
EcoT22I ATGCAT 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 473
ErhI CCWWGG 3 cut(s) 80, 450, 1185
Esp3I CGTCTC 2 cut(s) 633, 1134
FaqI GGGAC 1 cut(s) 298
Fnu4HI GCNGC 4 cut(s) 423, 497, 507, 510
FokI GGATG 1 cut(s) 562
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 4 cut(s) 423, 497, 507, 510
FspBI CTAG 1 cut(s) 207
GluI GCNGC 4 cut(s) 423, 497, 507, 510
GsuI CTGGAG 2 cut(s) 314, 1085
HaeIII GGCC 6 cut(s) 95, 417, 455, 522, 556, 1219
HapII CCGG 1 cut(s) 1117
HgaI GACGC 1 cut(s) 911
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 1175
HinfI GANTC 6 cut(s) 311, 475, 481, 943, 1007, 1167
HpaII CCGG 1 cut(s) 1117
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 4 cut(s) 323, 348, 480, 904
Hpy188III TCNNGA 5 cut(s) 46, 293, 671, 887, 1130
Hpy8I GTNNAC 1 cut(s) 874
HpyAV CCTTC 1 cut(s) 807
HpyCH4III ACNGT 2 cut(s) 543, 908
HpyCH4IV ACGT 1 cut(s) 1084
HpyCH4V TGCA 6 cut(s) 288, 698, 777, 827, 1104, 1182
HpyF10VI GCNNNNNNNGC 2 cut(s) 493, 1179
HpyF3I CTNAG 4 cut(s) 347, 756, 761, 857
HpySE526I ACGT 1 cut(s) 1084
KpnI GGTACC 1 cut(s) 664
Kzo9I GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
Lsp1109I GCAGC 3 cut(s) 409, 518, 521
LweI GCATC 2 cut(s) 742, 1091
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 3 cut(s) 365, 998, 1049
MalI GATC 6 cut(s) 212, 574, 771, 891, 933, 1196
MboI GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
MboII GAAGA 4 cut(s) 884, 966, 1145, 1202
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 1194
MhlI GDGCHC 3 cut(s) 473, 846, 865
MlsI TGGCCA 2 cut(s) 455, 1219
MluCI AATT 9 cut(s) 98, 135, 272, 411, 531, 593, 643, 835, 965
MluNI TGGCCA 2 cut(s) 455, 1219
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 240, 261
Mox20I TGGCCA 2 cut(s) 455, 1219
Mph1103I ATGCAT 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 2 cut(s) 455, 1219
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 3 cut(s) 225, 636, 1047
Msp20I TGGCCA 2 cut(s) 455, 1219
MspI CCGG 1 cut(s) 1117
MspR9I CCNGG 5 cut(s) 847, 927, 1004, 1064, 1232
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 3 cut(s) 288, 290, 1027
MvaI CCWGG 5 cut(s) 847, 927, 1004, 1064, 1232
MvnI CGCG 1 cut(s) 1093
MwoI GCNNNNNNNGC 2 cut(s) 493, 1179
NcoI CCATGG 2 cut(s) 80, 450
NdeII GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
NlaIV GGNNCC 1 cut(s) 662
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 3 cut(s) 365, 998, 1049
NsiI ATGCAT 1 cut(s) 290
PagI TCATGA 1 cut(s) 886
PasI CCCWGGG 1 cut(s) 846
PceI AGGCCT 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 3 cut(s) 288, 290, 1027
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 5 cut(s) 475, 481, 943, 1007, 1167
PflMI CCANNNNNTGG 1 cut(s) 809
PfoI TCCNGGA 2 cut(s) 1062, 1230
PkrI GCNGC 4 cut(s) 424, 498, 508, 511
PleI GAGTC 1 cut(s) 319
PmaCI CACGTG 1 cut(s) 1085
PmlI CACGTG 1 cut(s) 1085
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 1085
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 5 cut(s) 845, 925, 1002, 1062, 1230
PspCI CACGTG 1 cut(s) 1085
PspEI GGTNACC 1 cut(s) 998
PspGI CCWGG 5 cut(s) 845, 925, 1002, 1062, 1230
PspN4I GGNNCC 1 cut(s) 662
PspPI GGNCC 3 cut(s) 94, 416, 1060
PstNI CAGNNNCTG 1 cut(s) 687
PsuI RGATCY 1 cut(s) 1194
RsaI GTAC 3 cut(s) 340, 662, 1079
RsaNI GTAC 3 cut(s) 339, 661, 1078
RseI CAYNNNNRTG 3 cut(s) 225, 636, 1047
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 4 cut(s) 423, 497, 507, 510
Sau3AI GATC 6 cut(s) 210, 572, 769, 889, 931, 1194
Sau96I GGNCC 3 cut(s) 94, 416, 1060
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 5 cut(s) 847, 927, 1004, 1064, 1232
SduI GDGCHC 3 cut(s) 473, 846, 865
SfaNI GCATC 2 cut(s) 742, 1091
SinI GGWCC 1 cut(s) 1060
SmiMI CAYNNNNRTG 3 cut(s) 225, 636, 1047
SmlI CTYRAG 2 cut(s) 671, 1224
SmoI CTYRAG 2 cut(s) 671, 1224
Sse9I AATT 9 cut(s) 98, 135, 272, 411, 531, 593, 643, 835, 965
SseBI AGGCCT 1 cut(s) 522
SsiI CCGC 4 cut(s) 162, 497, 1093, 1171
SspMI CTAG 1 cut(s) 207
StuI AGGCCT 1 cut(s) 522
StyD4I CCNGG 5 cut(s) 845, 925, 1002, 1062, 1230
StyI CCWWGG 3 cut(s) 80, 450, 1185
TaaI ACNGT 2 cut(s) 543, 908
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 2 cut(s) 113, 1129
TasI AATT 9 cut(s) 98, 135, 272, 411, 531, 593, 643, 835, 965
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 5 cut(s) 475, 481, 943, 1007, 1167
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 4 cut(s) 446, 546, 784, 953
TseFI GTSAC 3 cut(s) 365, 998, 1049
TseI GCWGC 3 cut(s) 422, 506, 509
Tsp45I GTSAC 3 cut(s) 365, 998, 1049
TspDTI ATGAA 4 cut(s) 7, 404, 606, 884
TspGWI ACGGA 1 cut(s) 1189
TspRI CASTG 4 cut(s) 446, 546, 784, 953
Van91I CCANNNNNTGG 1 cut(s) 809
VpaK11BI GGWCC 1 cut(s) 1060
VspI ATTAAT 1 cut(s) 234
XagI CCTNNNNNAGG 2 cut(s) 346, 850
XapI RAATTY 4 cut(s) 531, 593, 643, 965
XcmI CCANNNNNNNNNTGG 2 cut(s) 78, 1082
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.