Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Reverse (-)

11744981 .. 11746455

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G27470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTAGCTATTGTGCGCCGGGTGGTGAAGAAGAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGTATTCACAAGGAAGCTTTGCTCGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTCTCCGCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGATGTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAATCTTCTCTTGAAGATTTTAAGAAGAAGAATGCGGGGAAAAAGGCGGGTGCTGCAGCTGCTTCGTATCCTGCTGGTGGAGCTGCTTTGAAATCTTCAAGTGGAACTGCTTCGAAGCCCAAAGAGACGAAGAAGAGGAAACAGGAAGAACCATCTACGCAAAAGGGTGCAAGGAAAAGCAAAATAGATGAGGAAACTAAGAGGAATGACGAGGAGACTGAGAATGACAACACGGAAGAAGAGAATGGAAACGATGAGGAGGATGAGAATGGAAACGATGAGGAAGATGAGAATGACGATGAAAATACAGAAGAGAATGGGAATGATGAGGAGAACGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGGATGAGGAAAACAGCATGGAAGAGAATGGGAATGAGAGCGAAGAGAGCGGGAATGAGGACCATAGCATGGAAGAAAATGGGAGCGGGGTTGGTGAAGATAATGAGAACGAGGACGGGAGCGTAAGTGGAAGTGGTGAAGAGGTAGAGAGTGATGAAGAAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

275

Amino Acids

30.55

Weight (kDa)

4.18

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	10 - 79	2.4e-06	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccB7I	CCANNNNNTGG	1 cut(s)	727
AccBSI	CCGCTC	2 cut(s)	708, 744
AciI	CCGC	7 cut(s)	35, 165, 269, 308, 320, 708, 744
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	350, 727
AgsI	TTSAA	3 cut(s)	287, 364, 372
AluBI	AGCT	6 cut(s)	31, 41, 70, 116, 332, 356
AluI	AGCT	6 cut(s)	31, 41, 70, 116, 332, 356
Alw26I	GTCTC	2 cut(s)	392, 482
AlwI	GGATC	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	31, 326, 329, 332, 356
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	718
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	70, 764, 806
AsuII	TTCGAA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	18, 313, 319, 341, 343
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	392, 482
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	7 cut(s)	32, 35, 269, 327, 330, 333, 357
BlsI	GCNGC	7 cut(s)	33, 36, 270, 328, 331, 334, 358
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	718
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	181
BmtI	GCTAGC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	168
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 769, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 727
Bse8I	GATNNNNATC	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	150, 541, 667
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	350, 727
BseMII	CTCAG	2 cut(s)	144, 483
BseRI	GAGGAG	4 cut(s)	500, 545, 617, 659
BseXI	GCAGC	5 cut(s)	18, 313, 319, 341, 343
BsiSI	CCGG	2 cut(s)	52, 86
BslI	CCNNNNNNNGG	2 cut(s)	350, 727
BsmAI	GTCTC	2 cut(s)	392, 482
BsmBI	CGTCTC	1 cut(s)	392
BsmI	GAATGC	2 cut(s)	125, 310
Bsp119I	TTCGAA	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	7 cut(s)	35, 165, 269, 308, 320, 708, 744
BspCNI	CTCAG	2 cut(s)	143, 484
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	386
BsrBI	CCGCTC	2 cut(s)	708, 744
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	96
Bst6I	CTCTTC	7 cut(s)	401, 507, 579, 621, 675, 696, 792
BstACI	GRCGYC	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	39, 123
BstDEI	CTNAG	3 cut(s)	130, 471, 492
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	150, 541, 667
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	392, 482
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 326, 332, 353, 705
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	5 cut(s)	18, 313, 319, 341, 343
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	150, 541, 667
Cac8I	GCNNGC	2 cut(s)	39, 123
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	718
CviAII	CATG	2 cut(s)	676, 727
CviJI	RGCY	9 cut(s)	31, 41, 70, 116, 215, 268, 332, 356, 391
CviKI_1	RGCY	9 cut(s)	31, 41, 70, 116, 215, 268, 332, 356, 391
DdeI	CTNAG	3 cut(s)	130, 471, 492
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eam1104I	CTCTTC	7 cut(s)	401, 507, 579, 621, 675, 696, 792
EarI	CTCTTC	7 cut(s)	401, 507, 579, 621, 675, 696, 792
EciI	GGCGGA	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	2 cut(s)	679, 730
FaiI	YATR	5 cut(s)	93, 209, 677, 723, 728
FatI	CATG	2 cut(s)	675, 726
FauI	CCCGC	4 cut(s)	301, 313, 701, 737
Fnu4HI	GCNGC	7 cut(s)	32, 35, 269, 327, 330, 333, 357
FokI	GGATG	3 cut(s)	137, 548, 674
Fsp4HI	GCNGC	7 cut(s)	32, 35, 269, 327, 330, 333, 357
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	7 cut(s)	32, 35, 269, 327, 330, 333, 357
HapII	CCGG	2 cut(s)	52, 86
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	679, 730
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	52, 86
HphI	GGTGA	3 cut(s)	70, 764, 806
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	10, 76, 133, 256
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	2 cut(s)	205, 649
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	194, 329, 443
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 326, 332, 353, 705
HpyF3I	CTNAG	3 cut(s)	130, 471, 492
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	679, 730
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	4 cut(s)	265, 353, 741, 777
LpnPI	CCDG	5 cut(s)	65, 99, 333, 357, 401
Lsp1109I	GCAGC	5 cut(s)	18, 313, 319, 341, 343
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	96
MalI	GATC	1 cut(s)	146
MbiI	CCGCTC	2 cut(s)	708, 744
MboI	GATC	1 cut(s)	144
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	3 cut(s)	228, 273, 294
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	52, 86
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	2 cut(s)	125, 310
MwoI	GCNNNNNNNGC	5 cut(s)	122, 326, 332, 353, 705
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	679, 730
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	386
PctI	GAATGC	2 cut(s)	125, 310
PdmI	GAANNNNTTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	727
PkrI	GCNGC	7 cut(s)	33, 36, 270, 328, 331, 334, 358
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	718
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	228, 273, 294
SatI	GCNGC	7 cut(s)	32, 35, 269, 327, 330, 333, 357
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	718
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	9 cut(s)	33, 43, 72, 99, 118, 162, 334, 358, 804
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	1 cut(s)	718
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	7 cut(s)	35, 165, 269, 308, 320, 708, 744
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	386
TasI	AATT	1 cut(s)	257
TauI	GCSGC	2 cut(s)	37, 271
Tru1I	TTAA	3 cut(s)	228, 273, 294
Tru9I	TTAA	3 cut(s)	228, 273, 294
TseI	GCWGC	5 cut(s)	31, 326, 329, 332, 356
TspDTI	ATGAA	5 cut(s)	139, 224, 588, 630, 828
TspGWI	ACGGA	2 cut(s)	521, 638
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.