Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002642.1

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Reverse (-)

18622 .. 20353

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002642.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgcacaatgctagtggcagtgatgatgggactagcgaatcgacaatgttggaggcgagatttgtgagtgtggcgacgatcaatgacgacgatgttttgaaggcgttggaggacattgagtttcctgagttcatcgagcctctgaaggcctctcttgaagggctgagggagaagaatgctgggaagaaggcaggaacatcaaaggcaaaggaagcgaaaacaaaagaggcgaaaacaaaggaagtgaaaaagaagaggaaattggaagagtcgccgcccaaggaagaggaagaaaaccaagatgaggatgggggcgacagcgctagcgaaagctcgagcaaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

115

Amino Acids

12.55

Weight (kDa)

4.8

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	164
AfeI	AGCGCT	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	100, 158
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	322
AoxI	GGCC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	323
AsuNHI	GCTAGC	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	20, 302
BfaI	CTAG	3 cut(s)	12, 33, 324
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	334
BmtI	GCTAGC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	117, 155
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	118, 156
BspOI	GCTAGC	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	279
Bst6I	CTCTTC	3 cut(s)	248, 261, 279
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	126, 164
BstF5I	GGATG	1 cut(s)	313
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	323
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviJI	RGCY	4 cut(s)	139, 149, 163, 333
CviKI_1	RGCY	4 cut(s)	139, 149, 163, 333
DdeI	CTNAG	2 cut(s)	126, 164
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	248, 261, 279
EarI	CTCTTC	3 cut(s)	248, 261, 279
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	149
Eco47III	AGCGCT	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaqI	GGGAC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	3 cut(s)	12, 33, 324
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	38, 269
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	125, 155
Hpy99I	CGWCG	2 cut(s)	79, 92
HpyAV	CCTTC	4 cut(s)	94, 139, 152, 181
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	126, 164
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	3 cut(s)	138, 165, 177
MaeI	CTAG	3 cut(s)	12, 33, 324
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	6 cut(s)	184, 196, 265, 278, 296, 302
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	30, 87
MnlI	CCTC	9 cut(s)	46, 103, 150, 159, 160, 220, 249, 280, 298
Mva1269I	GAATGC	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	78
NheI	GCTAGC	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	334
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	278
SetI	ASST	1 cut(s)	335
Sfr274I	CTCGAG	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	3 cut(s)	12, 33, 324
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	279
TaqI	TCGA	3 cut(s)	41, 135, 335
TasI	AATT	1 cut(s)	260
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	334
XspI	CTAG	3 cut(s)	12, 33, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.