Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Reverse (-)

50570114 .. 50570708

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCAATTCCCTCTCTCTCGATCTCTCGATTCTCATCTCGATTCCAACGACATCTGCAAGGGATCGAAGAGGCAGACGATCAATGACGACGATGTTTTGAAGGCGTTGGAGGACATTGAGTTTCCCGAGTTCATTGAGCCTCTGAAGGCCTCTCTTGAAGGGCTGAGGGAGAAGAATCCTGGGAAGAAGGCAGGAACATCAAAGGCAAAGGAAGCGAAAACAAAAGAGGCCAAAACAAAGAAAGTGAAAAAGAAGAGGAAATTGGAAGAGCCGCCGCCCAAGGAAGAGGAAGAAGAAGAGGAAGAAAACCAAGATGAGGATGGGGGCGACGGCGCTAGCGAAAGCTCAAGCTCAAGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

122

Amino Acids

13.5

Weight (kDa)

4.99

Isoelectric Point (pI)

74.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	272, 275
AclWI	GGATC	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	100, 158
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	345, 351
AluI	AGCT	2 cut(s)	345, 351
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	147, 228
AspLEI	GCGC	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	180
BfaI	CTAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	2 cut(s)	272, 275
BlsI	GCNGC	2 cut(s)	273, 276
Bme1390I	CCNGG	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	331, 337
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	179, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	179, 279
BseGI	GGATG	1 cut(s)	325
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	149, 230
BsiHKCI	CYCGRG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	316
BsnI	GGCC	2 cut(s)	149, 230
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	20, 62, 78
BspACI	CCGC	2 cut(s)	272, 275
BspANI	GGCC	2 cut(s)	149, 230
BspCNI	CTCAG	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	179, 279
BssMI	GATC	3 cut(s)	20, 62, 78
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	5 cut(s)	62, 248, 261, 279, 291
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	3 cut(s)	23, 65, 81
BstMBI	GATC	3 cut(s)	20, 62, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	149, 230
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	335
CviJI	RGCY	7 cut(s)	139, 149, 163, 230, 271, 345, 351
CviKI_1	RGCY	7 cut(s)	139, 149, 163, 230, 271, 345, 351
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	3 cut(s)	22, 64, 80
DpnII	GATC	3 cut(s)	20, 62, 78
Eam1104I	CTCTTC	5 cut(s)	62, 248, 261, 279, 291
EarI	CTCTTC	5 cut(s)	62, 248, 261, 279, 291
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	272, 275
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	272, 275
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	272, 275
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	149, 230
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	29, 41, 175
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	5 cut(s)	18, 26, 38, 125, 155
Hpy99I	CGWCG	2 cut(s)	92, 332
HpyAV	CCTTC	4 cut(s)	94, 139, 152, 181
HpyCH4V	TGCA	2 cut(s)	4, 57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	20, 62, 78
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	3 cut(s)	165, 177, 192
MaeI	CTAG	1 cut(s)	336
MalI	GATC	3 cut(s)	22, 64, 80
MboI	GATC	3 cut(s)	20, 62, 78
MluCI	AATT	2 cut(s)	5, 260
MmeI	TCCRAC	2 cut(s)	69, 87
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	3 cut(s)	20, 62, 78
NheI	GCTAGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 336
PfeI	GAWTC	3 cut(s)	29, 41, 175
PkrI	GCNGC	2 cut(s)	273, 276
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	261
SatI	GCNGC	2 cut(s)	272, 275
Sau3AI	GATC	3 cut(s)	20, 62, 78
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	2 cut(s)	347, 353
SmlI	CTYRAG	2 cut(s)	346, 352
SmoI	CTYRAG	2 cut(s)	346, 352
Sse9I	AATT	2 cut(s)	5, 260
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	2 cut(s)	272, 275
SspMI	CTAG	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	279
TaqI	TCGA	4 cut(s)	19, 27, 39, 65
TasI	AATT	2 cut(s)	5, 260
TauI	GCSGC	2 cut(s)	274, 277
TfiI	GAWTC	3 cut(s)	29, 41, 175
TspDTI	ATGAA	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.