Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

17990343 .. 17991421

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGAAAGTGGTAGCGGAGACGGCGGAGCTGCCCAAGACAATCGTGCGGCGCGTGGTGAAGGACAAGCTTTCCCAGTGCTCCAAAGCCGACGCCGACCTCAACGTCCACAAAGAAGCTCTCACCGCCTTCTCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACAGCCAACGACATCTGCAGGGGATCCAAGAGGCAGACGATCAACGCCGACGACGTCTTCAAAGCGCTCGAGGACATCGAGTTCCCCGAGTTCGTTGGCCCTCTCAAGGCCTCTCTCGAAGAGCTGAGGGAGAAGAATGCTGGAAAGAAGGCGGGGACATCAAAGGCAAAGGAAGCGAAAACTAAAGAGGCGAAAACAAAAGAAGCGAAGAAGAAGAAGAGGAAATTGGAAGAGCCACCACCCAAGCAAGAGGAAGAAAACCAAGATGAGGATGGAAGCGATGGCACTAGTGAAAGCTCGAGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

161

Amino Acids

17.75

Weight (kDa)

6.78

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	8 - 79	1.1e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	9 - 80	6.1e-09	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	228
AccII	CGCG	1 cut(s)	54
AciI	CCGC	7 cut(s)	17, 26, 49, 126, 145, 168, 323
AclWI	GGATC	2 cut(s)	189, 202
AcyI	GRCGYC	2 cut(s)	93, 225
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	277, 439
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	5 cut(s)	31, 70, 119, 295, 468
AluI	AGCT	5 cut(s)	31, 70, 119, 295, 468
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	189, 202
Ama87I	CYCGRG	3 cut(s)	239, 257, 469
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	2 cut(s)	268, 279
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	3 cut(s)	54, 143, 238
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	70, 115
AvaI	CYCGRG	3 cut(s)	239, 257, 469
BamHI	GGATCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	437, 446
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	187
BfoI	RGCGCY	2 cut(s)	144, 239
BisI	GCNGC	2 cut(s)	32, 50
BlsI	GCNGC	2 cut(s)	33, 51
BmeT110I	CYCGRG	3 cut(s)	239, 257, 469
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	260
BsaHI	GRCGYC	2 cut(s)	93, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 439
Bse1I	ACTGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	153, 448
BseLI	CCNNNNNNNGG	2 cut(s)	277, 439
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	270, 281
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	3 cut(s)	239, 257, 469
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	277, 439
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	270, 281
BsoBI	CYCGRG	3 cut(s)	239, 257, 469
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	194, 210
BspACI	CCGC	7 cut(s)	17, 26, 49, 126, 145, 168, 323
BspANI	GGCC	2 cut(s)	270, 281
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	191
BspPI	GGATC	2 cut(s)	189, 202
BspQI	GCTCTTC	2 cut(s)	285, 396
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	194, 210
BssNI	GRCGYC	2 cut(s)	93, 225
Bst6I	CTCTTC	3 cut(s)	285, 383, 396
BstACI	GRCGYC	2 cut(s)	93, 225
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	153, 448
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	2 cut(s)	144, 239
BstHHI	GCGC	3 cut(s)	54, 143, 238
BstKTI	GATC	2 cut(s)	197, 213
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	194, 210
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 125, 344
BstSFI	CTRYAG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	270, 281
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	153, 448
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	3 cut(s)	54, 143, 238
Cfr13I	GGNCC	1 cut(s)	269
CseI	GACGC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	196, 212
DpnII	GATC	2 cut(s)	194, 210
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
Eam1104I	CTCTTC	3 cut(s)	285, 383, 396
EarI	CTCTTC	3 cut(s)	285, 383, 396
EciI	GGCGGA	2 cut(s)	41, 157
Eco147I	AGGCCT	1 cut(s)	281
Eco47III	AGCGCT	1 cut(s)	237
Eco88I	CYCGRG	3 cut(s)	239, 257, 469
Esp3I	CGTCTC	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	340
FauI	CCCGC	2 cut(s)	152, 316
Fnu4HI	GCNGC	2 cut(s)	32, 50
FokI	GGATG	2 cut(s)	140, 455
Fsp4HI	GCNGC	2 cut(s)	32, 50
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	3 cut(s)	53, 142, 237
GluI	GCNGC	2 cut(s)	32, 50
HaeII	RGCGCY	2 cut(s)	144, 239
HaeIII	GGCC	2 cut(s)	270, 281
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	3 cut(s)	54, 143, 238
Hin1I	GRCGYC	2 cut(s)	93, 225
Hin6I	GCGC	3 cut(s)	52, 141, 236
HinP1I	GCGC	3 cut(s)	52, 141, 236
HindIII	AAGCTT	1 cut(s)	68
HphI	GGTGA	2 cut(s)	70, 115
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	3 cut(s)	95, 224, 227
HpyAV	CCTTC	3 cut(s)	55, 139, 313
HpyCH4IV	ACGT	2 cut(s)	105, 225
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 125, 344
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	105, 225
Hsp92I	GRCGYC	2 cut(s)	93, 225
HspAI	GCGC	3 cut(s)	52, 141, 236
Kzo9I	GATC	2 cut(s)	194, 210
LguI	GCTCTTC	2 cut(s)	285, 396
LmnI	GCTCC	2 cut(s)	28, 86
LpnPI	CCDG	3 cut(s)	89, 175, 297
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	105, 225
MalI	GATC	2 cut(s)	196, 212
MboI	GATC	2 cut(s)	194, 210
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	313
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	23, 125, 344
NdeII	GATC	2 cut(s)	194, 210
NlaIV	GGNNCC	1 cut(s)	196
PaeR7I	CTCGAG	2 cut(s)	239, 469
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	2 cut(s)	285, 396
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 222, 246, 255
PctI	GAATGC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	33, 51
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	269
PspXI	VCTCGAGB	2 cut(s)	239, 469
PstI	CTGCAG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	224
SapI	GCTCTTC	2 cut(s)	285, 396
SatI	GCNGC	2 cut(s)	32, 50
Sau3AI	GATC	2 cut(s)	194, 210
Sau96I	GGNCC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	9 cut(s)	33, 72, 102, 108, 121, 165, 228, 297, 470
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	187
Sfr274I	CTCGAG	2 cut(s)	239, 469
SlaI	CTCGAG	2 cut(s)	239, 469
SmlI	CTYRAG	3 cut(s)	239, 275, 469
SmoI	CTYRAG	3 cut(s)	239, 275, 469
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	1 cut(s)	395
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	7 cut(s)	17, 26, 49, 126, 145, 168, 323
SspMI	CTAG	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	281
TaiI	ACGT	2 cut(s)	108, 228
TaqI	TCGA	4 cut(s)	240, 249, 288, 470
TasI	AATT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	52
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XhoI	CTCGAG	2 cut(s)	239, 469
XspI	CTAG	1 cut(s)	459
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.