Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

16978966 .. 16980190

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1164600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGAAAGTGGTGGCGGAAGCGGAGGAGCTGCCGAAGGCTATCGTGCGACGGGTGGTGAAGGATAAGCTTTCCCAGTGCCACAAAGGCGACGGCGACCTAATCGTTCACAAAGAAGCGATCCTAGCATTCTCCGAAAGCTCCCGGATCTTCATCCACTACCTTTCCGCCACAGCAAATGACATATGCAGGGAAAAGAAGAGGCAGACGATCAGCGGCGACGACGTGTTGAAGGCGCTGGAAGAGATCGAGTTTCCTGAGTTCATCAAGCCTCTTGAAGACCTAAGGCCGAGGAATCCCGGGAAGGGTGCAGGAAAGAATGAAGGAAAGAATGCGACGAAGAATGCAGGAACAAGTGGAGGAAAGAATGCAGGAAAAAAAGCGGGAACGTCAAAAACAAAAGAAGTGAAGAAGAAGAGGAAATTGGAAGAATCATCGTCGCGGAAGCAAGGCGGAAAGGATGAGGACAACCAAGATGAGGATGGCAGTGGTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

167

Amino Acids

18.19

Weight (kDa)

8.73

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	10 - 80	3.1e-08	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	10 - 80	1.5e-07	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	442
AciI	CCGC	7 cut(s)	17, 23, 168, 216, 383, 442, 453
AclWI	GGATC	2 cut(s)	115, 155
AfiI	CCNNNNNNNGG	2 cut(s)	305, 478
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	232, 278
AjiI	CACGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	3 cut(s)	31, 70, 141
AluI	AGCT	3 cut(s)	31, 70, 141
AlwI	GGATC	2 cut(s)	115, 155
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	238
AsuC2I	CCSGG	3 cut(s)	145, 300, 301
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	476
BceAI	ACGGC	1 cut(s)	109
BcnI	CCSGG	3 cut(s)	145, 300, 301
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	32, 217
BlsI	GCNGC	2 cut(s)	33, 218
Bme1390I	CCNGG	3 cut(s)	145, 300, 301
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	145, 300, 301
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	285
BpuMI	CCSGG	3 cut(s)	145, 300, 301
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	290, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 478
Bse1I	ACTGG	1 cut(s)	76
Bse21I	CCTNAGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	290, 299
BseGI	GGATG	3 cut(s)	153, 466, 487
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	305, 478
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	145, 300
BslI	CCNNNNNNNGG	2 cut(s)	305, 478
BsmI	GAATGC	4 cut(s)	128, 337, 349, 373
BsnI	GGCC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	120, 147, 210, 246
BspACI	CCGC	7 cut(s)	17, 23, 168, 216, 383, 442, 453
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	442
BspPI	GGATC	2 cut(s)	115, 155
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	290, 299
BssMI	GATC	4 cut(s)	120, 147, 210, 246
Bst6I	CTCTTC	3 cut(s)	194, 237, 410
BstDEI	CTNAG	2 cut(s)	258, 284
BstF5I	GGATG	3 cut(s)	153, 466, 487
BstFNI	CGCG	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	4 cut(s)	123, 150, 213, 249
BstMBI	GATC	4 cut(s)	120, 147, 210, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 125
BstSCI	CCNGG	3 cut(s)	143, 298, 299
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	153, 466, 487
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	83, 493
CfoI	GCGC	1 cut(s)	238
Cfr9I	CCCGGG	1 cut(s)	299
CviJI	RGCY	6 cut(s)	31, 41, 70, 141, 271, 289
CviKI_1	RGCY	6 cut(s)	31, 41, 70, 141, 271, 289
DdeI	CTNAG	2 cut(s)	258, 284
DpnI	GATC	4 cut(s)	122, 149, 212, 248
DpnII	GATC	4 cut(s)	120, 147, 210, 246
Eam1104I	CTCTTC	3 cut(s)	194, 237, 410
EarI	CTCTTC	3 cut(s)	194, 237, 410
EciI	GGCGGA	3 cut(s)	32, 157, 468
Eco81I	CCTNAGG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	299
FaiI	YATR	2 cut(s)	185, 187
FauI	CCCGC	1 cut(s)	376
FauNDI	CATATG	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	32, 217
FokI	GGATG	3 cut(s)	140, 473, 494
Fsp4HI	GCNGC	2 cut(s)	32, 217
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	32, 217
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	145, 300
HhaI	GCGC	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	295, 431
HpaII	CCGG	2 cut(s)	145, 300
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	257, 275
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	6 cut(s)	54, 95, 224, 227, 340, 442
HpyAV	CCTTC	5 cut(s)	31, 55, 226, 298, 317
HpyCH4IV	ACGT	2 cut(s)	225, 389
HpyCH4V	TGCA	4 cut(s)	189, 311, 347, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 125
HpyF3I	CTNAG	2 cut(s)	258, 284
HpySE526I	ACGT	2 cut(s)	225, 389
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	4 cut(s)	120, 147, 210, 246
LmnI	GCTCC	2 cut(s)	28, 146
LpnPI	CCDG	9 cut(s)	89, 158, 175, 224, 270, 297, 313, 333, 357
Lsp1109I	GCAGC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	225, 389
MalI	GATC	4 cut(s)	122, 149, 212, 248
MboI	GATC	4 cut(s)	120, 147, 210, 246
MboII	GAAGA	9 cut(s)	142, 211, 254, 290, 352, 421, 424, 427, 440
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	1 cut(s)	422
MnlI	CCTC	8 cut(s)	19, 195, 282, 285, 353, 411, 457, 472
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	2 cut(s)	145, 300
MspR9I	CCNGG	3 cut(s)	145, 300, 301
Mva1269I	GAATGC	4 cut(s)	128, 337, 349, 373
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	87, 125
NciI	CCSGG	3 cut(s)	145, 300, 301
NdeI	CATATG	1 cut(s)	185
NdeII	GATC	4 cut(s)	120, 147, 210, 246
NmeAIII	GCCGAG	1 cut(s)	315
PctI	GAATGC	4 cut(s)	128, 337, 349, 373
PfeI	GAWTC	2 cut(s)	295, 431
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	33, 218
PsuI	RGATCY	1 cut(s)	147
SatI	GCNGC	2 cut(s)	32, 217
Sau3AI	GATC	4 cut(s)	120, 147, 210, 246
ScrFI	CCNGG	3 cut(s)	145, 300, 301
SetI	ASST	8 cut(s)	33, 72, 102, 143, 165, 228, 285, 392
SmaI	CCCGGG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	422
SsiI	CCGC	7 cut(s)	17, 23, 168, 216, 383, 442, 453
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	3 cut(s)	143, 298, 299
TaiI	ACGT	2 cut(s)	228, 392
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	422
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	295, 431
TscAI	CASTG	2 cut(s)	83, 493
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	142, 253, 336
TspMI	CCCGGG	1 cut(s)	299
TspRI	CASTG	2 cut(s)	83, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmaI	CCCGGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.