Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

41498781 .. 41499935

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAAACGGCGGAGCTGCCCAAAACTATCGTGCGCCGTGTGGTGAAGGATAAGCTTTCCGAGTGCTCCAAAGGCGACGGCGACCTGAACGTCCACAAAGAAGCTCTCACCGCCTTCTCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACAGCCAACGACATCTGCAAGGGATCGAAGAGGCAGACGATCAACGGCGACGATGTTTTGAAGGCGTTGGAGGACATCGAGTTCCCGGAGTTCGTCGAGCCTCTGACGGCCTCTCTTGAAGGGCTGAGGGAGAAGAATGCTGGGAAGAAGGCAGGAACATCAAAGGCAAAGGAAGCGAAAACAAAGGAAGTGAAAAAGAAGAGGAAATTGGAAGAGCCACCACCCAAGGAAGAGGAAGAAGAAGAGGAAGAAAACCAAGATGAGGATGGGGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGATGGCGCTAGCGAAAGCTCGAGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

165

Amino Acids

17.93

Weight (kDa)

4.69

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	4 - 75	1.4e-09	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	4 - 75	1.2e-06	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	4 cut(s)	11, 111, 130, 153
AclWI	GGATC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	217, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	16, 55, 104, 483
AluI	AGCT	4 cut(s)	16, 55, 104, 483
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	3 cut(s)	36, 128, 473
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	55, 100
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	8 cut(s)	416, 425, 431, 437, 443, 449, 455, 461
BceAI	ACGGC	5 cut(s)	21, 24, 94, 217, 279
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	2 cut(s)	129, 474
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	141
BmtI	GCTAGC	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	138, 427
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	3
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	179, 195
BspACI	CCGC	4 cut(s)	11, 111, 130, 153
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	179, 195
BssT1I	CCWWGG	1 cut(s)	381
Bst6I	CTCTTC	5 cut(s)	179, 350, 363, 381, 393
BstC8I	GCNNGC	2 cut(s)	130, 475
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	138, 427
BstH2I	RGCGCY	2 cut(s)	129, 474
BstHHI	GCGC	3 cut(s)	36, 128, 473
BstKTI	GATC	2 cut(s)	182, 198
BstMBI	GATC	2 cut(s)	179, 195
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 110, 329
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	266
BtgZI	GCGATG	7 cut(s)	444, 450, 456, 462, 468, 474, 480
BtsCI	GGATG	2 cut(s)	138, 427
Cac8I	GCNNGC	2 cut(s)	130, 475
CfoI	GCGC	3 cut(s)	36, 128, 473
CviJI	RGCY	9 cut(s)	16, 55, 104, 161, 256, 266, 280, 373, 483
CviKI_1	RGCY	9 cut(s)	16, 55, 104, 161, 256, 266, 280, 373, 483
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	181, 197
DpnII	GATC	2 cut(s)	179, 195
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	5 cut(s)	179, 350, 363, 381, 393
EarI	CTCTTC	5 cut(s)	179, 350, 363, 381, 393
EciI	GGCGGA	2 cut(s)	26, 142
Eco130I	CCWWGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	2 cut(s)	125, 434
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	3 cut(s)	35, 127, 472
GluI	GCNGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	2 cut(s)	129, 474
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	3 cut(s)	36, 128, 473
Hin6I	GCGC	3 cut(s)	34, 126, 471
HinP1I	GCGC	3 cut(s)	34, 126, 471
HindIII	AAGCTT	1 cut(s)	53
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	55, 100
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	61, 121, 261
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	3 cut(s)	80, 209, 254
HpyAV	CCTTC	5 cut(s)	40, 124, 211, 269, 298
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 110, 329
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	90
HspAI	GCGC	3 cut(s)	34, 126, 471
Kzo9I	GATC	2 cut(s)	179, 195
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	13, 71
LpnPI	CCDG	4 cut(s)	98, 255, 282, 294
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	90
MalI	GATC	2 cut(s)	181, 197
MboI	GATC	2 cut(s)	179, 195
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	204
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	3 cut(s)	72, 110, 329
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	179, 195
NheI	GCTAGC	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	363
PctI	GAATGC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	296
PspXI	VCTCGAGB	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	363
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	179, 195
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	7 cut(s)	18, 57, 87, 93, 106, 150, 485
SfaNI	GCATC	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	484
SlaI	CTCGAG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	4 cut(s)	11, 111, 130, 153
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	381
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	182, 234, 252, 485
TasI	AATT	1 cut(s)	362
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	484
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.