Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

40197605 .. 40198314

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAACGGCGGAGCTGCCCAAGACTATCGTGCGCCGTGTGGTGAAGGATAAGCTTTCCGAATGCTCCAAAGGCGACGGCGACCTGAACGTCCACAAAGAAGCTCTCACCGCCTTCTCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCGGCCACAGCCAACGACATCTGCAAGGGATCCAAGAGGCAGACGATCAACGCCGACGACGTTTTGAAGGCGTTGGAGGACATTGAGTTTCCCGAGTTCGTCGAGCCTCTCAGGGCCTCTCTTGAAGGGCTGAGGGAGAAGAATGCTGGGAAGAAGGCAGGAACATCAAAGGCAAAGGAAGAGAAAGCAAAAGAGGCGAAAACAAAGGAAGTGAAAAAGAAGAGGAAATTGGAAGAGCCGCCGCCCAAGGAAGAAGAGGAAGAAGAAAACCAAGATGAGGATGGGGGCGATGGCACTAGCGATAACTCGAGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

5.25

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	4 - 75	8e-10	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	4 - 75	3.1e-07	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	5 cut(s)	11, 111, 130, 389, 392
AclWI	GGATC	2 cut(s)	174, 187
AcoI	YGGCCR	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	217, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	16, 55, 104
AluI	AGCT	3 cut(s)	16, 55, 104
AlwI	GGATC	2 cut(s)	174, 187
Ama87I	CYCGRG	2 cut(s)	242, 457
AoxI	GGCC	2 cut(s)	153, 264
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	36, 128
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	55, 100
AvaI	CYCGRG	2 cut(s)	242, 457
BamHI	GGATCC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	425, 434
BceAI	ACGGC	3 cut(s)	21, 24, 94
BfaI	CTAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	3 cut(s)	17, 389, 392
BlsI	GCNGC	3 cut(s)	18, 390, 393
BmeT110I	CYCGRG	2 cut(s)	242, 457
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	138, 436
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	272, 274
BseXI	GCAGC	1 cut(s)	3
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	2 cut(s)	155, 266
BsiHKCI	CYCGRG	2 cut(s)	242, 457
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmI	GAATGC	2 cut(s)	68, 298
BsnI	GGCC	2 cut(s)	155, 266
BsoBI	CYCGRG	2 cut(s)	242, 457
Bsp143I	GATC	2 cut(s)	179, 195
BspACI	CCGC	5 cut(s)	11, 111, 130, 389, 392
BspANI	GGCC	2 cut(s)	155, 266
BspCNI	CTCAG	2 cut(s)	273, 273
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	174, 187
BspQI	GCTCTTC	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	179, 195
BssT1I	CCWWGG	1 cut(s)	396
Bst6I	CTCTTC	4 cut(s)	324, 365, 378, 399
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	260, 281
BstF5I	GGATG	2 cut(s)	138, 436
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	36, 128
BstKTI	GATC	2 cut(s)	182, 198
BstMBI	GATC	2 cut(s)	179, 195
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 110, 344
BstV1I	GCAGC	1 cut(s)	3
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	155, 266
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	138, 436
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	36, 128
Cfr13I	GGNCC	1 cut(s)	264
CviJI	RGCY	9 cut(s)	16, 55, 104, 155, 161, 256, 266, 280, 388
CviKI_1	RGCY	9 cut(s)	16, 55, 104, 155, 161, 256, 266, 280, 388
DdeI	CTNAG	2 cut(s)	260, 281
DpnI	GATC	2 cut(s)	181, 197
DpnII	GATC	2 cut(s)	179, 195
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	4 cut(s)	324, 365, 378, 399
EarI	CTCTTC	4 cut(s)	324, 365, 378, 399
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	396
Eco88I	CYCGRG	2 cut(s)	242, 457
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	17, 389, 392
FokI	GGATG	2 cut(s)	125, 443
Fsp4HI	GCNGC	3 cut(s)	17, 389, 392
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	35, 127
GluI	GCNGC	3 cut(s)	17, 389, 392
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	155, 266
HhaI	GCGC	2 cut(s)	36, 128
Hin6I	GCGC	2 cut(s)	34, 126
HinP1I	GCGC	2 cut(s)	34, 126
HindIII	AAGCTT	1 cut(s)	53
HphI	GGTGA	2 cut(s)	55, 100
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	61, 121
Hpy188III	TCNNGA	2 cut(s)	242, 272
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	4 cut(s)	80, 209, 212, 254
HpyAV	CCTTC	5 cut(s)	40, 124, 211, 269, 298
HpyCH4IV	ACGT	2 cut(s)	90, 210
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 110, 344
HpyF3I	CTNAG	2 cut(s)	260, 281
HpySE526I	ACGT	2 cut(s)	90, 210
HspAI	GCGC	2 cut(s)	34, 126
Kzo9I	GATC	2 cut(s)	179, 195
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	13, 71
LpnPI	CCDG	4 cut(s)	98, 247, 282, 294
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	2 cut(s)	90, 210
MalI	GATC	2 cut(s)	181, 197
MboI	GATC	2 cut(s)	179, 195
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	204
Mva1269I	GAATGC	2 cut(s)	68, 298
MwoI	GCNNNNNNNGC	3 cut(s)	72, 110, 344
NdeII	GATC	2 cut(s)	179, 195
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	2 cut(s)	68, 298
PkrI	GCNGC	3 cut(s)	18, 390, 393
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	264
PspXI	VCTCGAGB	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	378
SatI	GCNGC	3 cut(s)	17, 389, 392
Sau3AI	GATC	2 cut(s)	179, 195
Sau96I	GGNCC	1 cut(s)	264
SetI	ASST	7 cut(s)	18, 57, 87, 93, 106, 150, 213
SfaNI	GCATC	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	5 cut(s)	11, 111, 130, 389, 392
SspMI	CTAG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	396
TaiI	ACGT	2 cut(s)	93, 213
TaqI	TCGA	2 cut(s)	252, 458
TasI	AATT	1 cut(s)	377
TauI	GCSGC	2 cut(s)	391, 394
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	457
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.