Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

46816600 .. 46817200

Gene Structure 601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG347200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCCTTTTCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACAGCCAACGACATCTGCAAGGGATCGAAGAGGCAGACGATCAACAACGACGATGTTTTGAAGGCGTTGGAGGACATTGAGTTTCCCGAGTTCATCGAGCCTCTGAAGGCCTCTCTTGAAGGGCTGAGGGAGAAGAATGCTGGGAAGAAAGCAGGAACATCAAAGGCAAAGGAAGCGAAAACAAAAGAGGCGAAAACAAAGGAAGTGAAAAAGAAGAGGAAATTGGAAGAGCCTCCGCCTAAGGAAGAGGAAGAAGAAGAGGAAGAAAACCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

108

Amino Acids

12.27

Weight (kDa)

5.42

Isoelectric Point (pI)

73.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	5 - 39	5.2e-06	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	22, 45, 284
AclWI	GGATC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	109, 167
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AlwI	GGATC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse21I	CCTNAGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	71, 87
BspACI	CCGC	3 cut(s)	22, 45, 284
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	165
BspPI	GGATC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	270
BssMI	GATC	2 cut(s)	71, 87
Bst6I	CTCTTC	5 cut(s)	71, 257, 270, 288, 300
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	173, 288
BstF5I	GGATG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	74, 90
BstMBI	GATC	2 cut(s)	71, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	20
CviJI	RGCY	5 cut(s)	53, 148, 158, 172, 280
CviKI_1	RGCY	5 cut(s)	53, 148, 158, 172, 280
DdeI	CTNAG	2 cut(s)	173, 288
DpnI	GATC	2 cut(s)	73, 89
DpnII	GATC	2 cut(s)	71, 87
Eam1104I	CTCTTC	5 cut(s)	71, 257, 270, 288, 300
EarI	CTCTTC	5 cut(s)	71, 257, 270, 288, 300
EciI	GGCGGA	2 cut(s)	34, 273
Eco147I	AGGCCT	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	134
FauI	CCCGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	13, 153
Hpy188III	TCNNGA	2 cut(s)	134, 164
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	103, 148, 161
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	173, 288
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	71, 87
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	2 cut(s)	174, 186
LweI	GCATC	1 cut(s)	33
MalI	GATC	2 cut(s)	73, 89
MboI	GATC	2 cut(s)	71, 87
MluCI	AATT	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	2 cut(s)	71, 87
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	71, 87
SetI	ASST	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	33
SgeI	CNNG	9 cut(s)	25, 33, 79, 146, 148, 157, 176, 201, 213
Sse9I	AATT	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	3 cut(s)	22, 45, 284
StuI	AGGCCT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	74, 144
TasI	AATT	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	19, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.