Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

10159084 .. 10160627

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGAAAGTGGTAGCGGAAGCGGAGGAGCTGCCGAAGGCTATCGTGCGCCGAGTGGTGAAGGATAAGCTTTCCCAGTGCTCCAAGGGCGACGGTGACCTAACTCTTCACAAAGAAGCCCTCTTGGCTTTCTCCGAGAGCGCCCGAATTTTCATCCACTACCTTTCCGCCACAGCAAATGACATATGCAAGGAAAAGAAGAGGCAGACGATCAGCGCCGACGATGTTTTGAAAGCGCTGGAAGAGATTGAGTTCTCCGAGTTTATCAAGCCTCTTGAGGCCTCTCTTAAAGGAAAGAATCCAGGAAAGAATGCAGAAAAGAGTGGAGGAAAGAATGCAGGAAAACAGAAAGCAGGAACATCAAAAGCAAAGGAAGTGAAGAAGAAGAGGAAATTGGAAGAGCCATCATCGCGAAAGCTAAAGGAAAAGGAGGAAGACAACCAAGATGAAAATGGCAGTGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

157

Amino Acids

17.24

Weight (kDa)

8.7

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	412
AciI	CCGC	3 cut(s)	17, 23, 168
AcsI	RAATTY	1 cut(s)	147
AfeI	AGCGCT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	31, 70, 418
AluI	AGCT	3 cut(s)	31, 70, 418
Alw21I	GWGCWC	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	4 cut(s)	51, 143, 218, 238
AsuHPI	GGTGA	2 cut(s)	70, 107
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	303
BfoI	RGCGCY	3 cut(s)	144, 219, 239
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	83
BsmI	GAATGC	2 cut(s)	316, 340
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	210
Bsp68I	TCGCGA	1 cut(s)	412
BspACI	CCGC	3 cut(s)	17, 23, 168
BspANI	GGCC	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	5 cut(s)	111, 194, 237, 380, 393
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	412
BstH2I	RGCGCY	3 cut(s)	144, 219, 239
BstHHI	GCGC	4 cut(s)	51, 143, 218, 238
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 125, 409
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	83, 463
BtuMI	TCGCGA	1 cut(s)	412
CfoI	GCGC	4 cut(s)	51, 143, 218, 238
CviJI	RGCY	9 cut(s)	31, 41, 70, 119, 128, 271, 281, 403, 418
CviKI_1	RGCY	9 cut(s)	31, 41, 70, 119, 128, 271, 281, 403, 418
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	5 cut(s)	111, 194, 237, 380, 393
EarI	CTCTTC	5 cut(s)	111, 194, 237, 380, 393
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	281
Eco47III	AGCGCT	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	2 cut(s)	185, 187
FauNDI	CATATG	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	32
GlaI	GCGC	4 cut(s)	50, 142, 217, 237
GluI	GCNGC	1 cut(s)	32
HaeII	RGCGCY	3 cut(s)	144, 219, 239
HaeIII	GGCC	1 cut(s)	281
HhaI	GCGC	4 cut(s)	51, 143, 218, 238
Hin6I	GCGC	4 cut(s)	49, 141, 216, 236
HinP1I	GCGC	4 cut(s)	49, 141, 216, 236
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	298
HphI	GGTGA	2 cut(s)	70, 107
Hpy188I	TCNGA	2 cut(s)	136, 259
Hpy188III	TCNNGA	2 cut(s)	275, 411
Hpy99I	CGWCG	2 cut(s)	95, 224
HpyAV	CCTTC	2 cut(s)	31, 55
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	189, 314, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 125, 409
HspAI	GCGC	4 cut(s)	49, 141, 216, 236
Kzo9I	GATC	1 cut(s)	210
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	28, 86
LpnPI	CCDG	6 cut(s)	89, 224, 288, 315, 324, 339
Lsp1109I	GCAGC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	8 cut(s)	98, 211, 254, 391, 394, 397, 410, 446
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	2 cut(s)	147, 392
MnlI	CCTC	9 cut(s)	19, 131, 195, 271, 282, 292, 320, 381, 424
MseI	TTAA	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	316, 340
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	3 cut(s)	87, 125, 409
NdeI	CATATG	1 cut(s)	185
NdeII	GATC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	95
NruI	TCGCGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	393
PctI	GAATGC	2 cut(s)	316, 340
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	301
RruI	TCGCGA	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	5 cut(s)	33, 72, 102, 165, 420
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	147, 392
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	17, 23, 168
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	95
TasI	AATT	2 cut(s)	147, 392
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	83, 463
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	142, 462
TspRI	CASTG	2 cut(s)	83, 463
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.