Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009448

Physical Location & Seq

Genomic Coordinates Forward (+)

37877470 .. 37878320

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG334400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAATGTTTTGGAAAATTACAATTGTAACCTCAACCCCTCTCCAGCTCAAAAGCGATTCCAGCCTCCAGGTATTTGTGAGAAACACAGGGTAACAATGGAAACGGCGGAGCTGCCCAAGACTATCGTGCGCCGTGTGGTGAAGGATAAGCTTTCCGAGTGCTCCAAAGGCGACGGCGACCTGAACGTCCACAAAGAAGCTCTCACCGCCTTCTCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACAGCCAACGACATCTGCAAGGGATCGAAGAGGCAGACGATCAACGGCGACGATGTTTTGAAGGCGTTGGAGGACATTGAGTTCCCGGAGTTCGTCGAGCCTCTGAAGGCCTCTCTTGAAGGGCTGAGGGAGAAGAATGCTGGGAAGAAGGCAGGAACATCAAAGGCAAAGGAAGCGAAAACAAAAGAGGCGAAAACAAAGGAAGTGAAAAAGAAGAGGAAATTGGAAGAGCCGCCTCCCAAGGAAGAGGAAGAAGAAGAGGAAGAAAACCAAGATGAGGATGGCGGCGATGGCGCTAGCGAAAGCTCGAGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008622 GO:0031974 GO:0031981 GO:0032991 GO:0042575 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

190

Amino Acids

21.16

Weight (kDa)

5.51

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	28 - 107	1.6e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	36 - 107	1.9e-09	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27470
fragaria_vesca	FvH4_3g24950 FvH4_3g24950
malus_domestica	MD11G1164600.v1.1
prunus_persica	Prupe.6G130500_v2.0.a1
pyrus_communis	pycom11g13690
rosa_chinensis	RchiOBHm_Chr5g0044741
rosa_laevigata	RLG00000009305 RLG00000019693 RLG00000023195 RLG00000034295
rosa_multiflora	Rmu_sc0000228.1_g000014 Rmu_sc0002642.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036290
rosa_rugosa	Rorug05G0217200
rosa_samantha	Rh2CG347200 Rh5AG300600 Rh5BG307300 Rh5CG334400 Rh5DG317400
rosa_wichuraiana	Rw5G027810 Rw5G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AciI	CCGC	6 cut(s)	107, 207, 226, 249, 485, 537
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	313, 371
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	5 cut(s)	47, 112, 151, 200, 558
AluI	AGCT	5 cut(s)	47, 112, 151, 200, 558
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	3 cut(s)	132, 224, 548
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	151, 196
AsuNHI	GCTAGC	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	2 cut(s)	527, 536
BceAI	ACGGC	4 cut(s)	117, 120, 190, 313
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	338
BfaI	CTAG	1 cut(s)	549
BfoI	RGCGCY	2 cut(s)	225, 549
BisI	GCNGC	3 cut(s)	113, 485, 538
BlsI	GCNGC	3 cut(s)	114, 486, 539
Bme1390I	CCNGG	2 cut(s)	69, 338
BmeT110I	CYCGRG	1 cut(s)	559
BmrFI	CCNGG	2 cut(s)	69, 338
BmsI	GCATC	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	552
BpmI	CTGGAG	2 cut(s)	27, 51
Bpu10I	CCTNAGC	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	234, 538
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	275, 291
BspACI	CCGC	6 cut(s)	107, 207, 226, 249, 485, 537
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	369
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	1 cut(s)	283
BspQI	GCTCTTC	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	275, 291
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	5 cut(s)	275, 461, 474, 492, 504
BstC8I	GCNNGC	2 cut(s)	226, 550
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	234, 538
BstH2I	RGCGCY	2 cut(s)	225, 549
BstHHI	GCGC	3 cut(s)	132, 224, 548
BstKTI	GATC	2 cut(s)	278, 294
BstMBI	GATC	2 cut(s)	275, 291
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 168, 206, 425, 543
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	67, 336
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	362
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	234, 538
Cac8I	GCNNGC	2 cut(s)	226, 550
CfoI	GCGC	3 cut(s)	132, 224, 548
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	2 cut(s)	277, 293
DpnII	GATC	2 cut(s)	275, 291
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	5 cut(s)	275, 461, 474, 492, 504
EarI	CTCTTC	5 cut(s)	275, 461, 474, 492, 504
EciI	GGCGGA	2 cut(s)	122, 238
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	3 cut(s)	113, 485, 538
FokI	GGATG	2 cut(s)	221, 545
Fsp4HI	GCNGC	3 cut(s)	113, 485, 538
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	3 cut(s)	131, 223, 547
GluI	GCNGC	3 cut(s)	113, 485, 538
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	27, 51
HaeII	RGCGCY	2 cut(s)	225, 549
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	3 cut(s)	132, 224, 548
Hin6I	GCGC	3 cut(s)	130, 222, 546
HinP1I	GCGC	3 cut(s)	130, 222, 546
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	151, 196
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	157, 217, 357
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	176, 305, 350
HpyAV	CCTTC	6 cut(s)	136, 220, 307, 352, 365, 394
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 168, 206, 425, 543
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	186
HspAI	GCGC	3 cut(s)	130, 222, 546
Kzo9I	GATC	2 cut(s)	275, 291
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	109, 167
LpnPI	CCDG	9 cut(s)	54, 57, 73, 74, 81, 194, 351, 378, 390
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	26, 91
MalI	GATC	2 cut(s)	277, 293
MboI	GATC	2 cut(s)	275, 291
MfeI	CAATTG	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	16, 22, 473
MmeI	TCCRAC	1 cut(s)	300
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	2 cut(s)	69, 338
MunI	CAATTG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	5 cut(s)	61, 168, 206, 425, 543
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	275, 291
NheI	GCTAGC	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	114, 486, 539
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	67
PspXI	VCTCGAGB	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	474
SatI	GCNGC	3 cut(s)	113, 485, 538
Sau3AI	GATC	2 cut(s)	275, 291
ScrFI	CCNGG	2 cut(s)	69, 338
SduI	GDGCHC	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	559
SlaI	CTCGAG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	3 cut(s)	16, 22, 473
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	6 cut(s)	107, 207, 226, 249, 485, 537
SspMI	CTAG	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	67, 336
StyI	CCWWGG	1 cut(s)	492
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	3 cut(s)	278, 348, 560
TasI	AATT	3 cut(s)	16, 22, 473
TauI	GCSGC	2 cut(s)	487, 540
TfiI	GAWTC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	17, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	559
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.