No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28130 |
| fragaria_vesca | FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 |
| malus_domestica | MD11G1147300.v1.1 |
| prunus_persica | Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 |
| pyrus_communis | pycom11g12060 |
| rosa_chinensis | RchiOBHm_Chr5g0056961 |
| rosa_laevigata | RLG00000035143 |
| rosa_multiflora | Rmu_sc0002035.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00023210 |
| rosa_rugosa | Rorug05G0304700 Rorug05G0304800 Rorug05G0304900 |
| rosa_samantha | Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500 |
| rosa_wichuraiana | Rw5G035220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 719, 1344 |
| AclWI | GGATC | 3 cut(s) | 32, 918, 931 |
| AcsI | RAATTY | 2 cut(s) | 385, 1120 |
| AfaI | GTAC | 4 cut(s) | 990, 1184, 1225, 1248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1198, 1311 |
| AflIII | ACRYGT | 2 cut(s) | 481, 1257 |
| AjiI | CACGTC | 1 cut(s) | 482 |
| AjnI | CCWGG | 1 cut(s) | 1191 |
| AluBI | AGCT | 8 cut(s) | 214, 260, 608, 656, 758, 954, 968, 1131 |
| AluI | AGCT | 8 cut(s) | 214, 260, 608, 656, 758, 954, 968, 1131 |
| Alw21I | GWGCWC | 1 cut(s) | 1133 |
| AlwI | GGATC | 3 cut(s) | 32, 918, 931 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1281 |
| ApeKI | GCWGC | 4 cut(s) | 351, 954, 1365, 1368 |
| ApoI | RAATTY | 2 cut(s) | 385, 1120 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1282 |
| AspS9I | GGNCC | 2 cut(s) | 14, 737 |
| AsuII | TTCGAA | 1 cut(s) | 1333 |
| AvaII | GGWCC | 2 cut(s) | 14, 737 |
| BamHI | GGATCC | 1 cut(s) | 923 |
| BanII | GRGCYC | 1 cut(s) | 1133 |
| BbsI | GAAGAC | 1 cut(s) | 866 |
| Bbv12I | GWGCWC | 1 cut(s) | 1133 |
| BbvI | GCAGC | 2 cut(s) | 338, 941 |
| BccI | CCATC | 1 cut(s) | 5 |
| BceAI | ACGGC | 1 cut(s) | 463 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 859, 893 |
| BciT130I | CCWGG | 1 cut(s) | 1193 |
| BclI | TGATCA | 2 cut(s) | 465, 1099 |
| BfaI | CTAG | 2 cut(s) | 710, 1221 |
| BglII | AGATCT | 1 cut(s) | 541 |
| BisI | GCNGC | 5 cut(s) | 352, 955, 1344, 1366, 1369 |
| BlpI | GCTNAGC | 1 cut(s) | 1127 |
| BlsI | GCNGC | 5 cut(s) | 353, 956, 1345, 1367, 1370 |
| Bme1390I | CCNGG | 1 cut(s) | 1193 |
| Bme18I | GGWCC | 2 cut(s) | 14, 737 |
| BmgBI | CACGTC | 1 cut(s) | 482 |
| BmgT120I | GGNCC | 2 cut(s) | 14, 737 |
| BmiI | GGNNCC | 1 cut(s) | 925 |
| BmrFI | CCNGG | 1 cut(s) | 1193 |
| BmsI | GCATC | 3 cut(s) | 1030, 1063, 1331 |
| BpiI | GAAGAC | 1 cut(s) | 866 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1127 |
| Bpu14I | TTCGAA | 1 cut(s) | 1333 |
| BpuEI | CTTGAG | 1 cut(s) | 978 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1142 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 597, 627 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1198, 1311 |
| Bse1I | ACTGG | 2 cut(s) | 629, 1214 |
| Bse3DI | GCAATG | 1 cut(s) | 1068 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1142 |
| BseBI | CCWGG | 1 cut(s) | 1193 |
| BseGI | GGATG | 2 cut(s) | 16, 190 |
| BseJI | GATNNNNATC | 1 cut(s) | 1142 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1198, 1311 |
| BseMI | GCAATG | 1 cut(s) | 1068 |
| BseMII | CTCAG | 6 cut(s) | 717, 1049, 1118, 1194, 1241, 1288 |
| BseNI | ACTGG | 2 cut(s) | 629, 1214 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 2 cut(s) | 338, 941 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1133 |
| BslFI | GGGAC | 1 cut(s) | 1268 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1198, 1311 |
| BsmFI | GGGAC | 1 cut(s) | 1268 |
| Bsp119I | TTCGAA | 1 cut(s) | 1333 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1133 |
| Bsp1407I | TGTACA | 1 cut(s) | 1182 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1127 |
| BspACI | CCGC | 2 cut(s) | 719, 1344 |
| BspCNI | CTCAG | 6 cut(s) | 718, 1050, 1119, 1195, 1242, 1287 |
| BspHI | TCATGA | 1 cut(s) | 468 |
| BspLI | GGNNCC | 1 cut(s) | 925 |
| BspPI | GGATC | 3 cut(s) | 32, 918, 931 |
| BspQI | GCTCTTC | 1 cut(s) | 1220 |
| BspT104I | TTCGAA | 1 cut(s) | 1333 |
| BsrDI | GCAATG | 1 cut(s) | 1068 |
| BsrGI | TGTACA | 1 cut(s) | 1182 |
| BsrI | ACTGG | 2 cut(s) | 629, 1214 |
| Bst2UI | CCWGG | 1 cut(s) | 1193 |
| Bst4CI | ACNGT | 3 cut(s) | 406, 582, 1283 |
| Bst6I | CTCTTC | 3 cut(s) | 119, 261, 1220 |
| BstAUI | TGTACA | 1 cut(s) | 1182 |
| BstBI | TTCGAA | 1 cut(s) | 1333 |
| BstC8I | GCNNGC | 4 cut(s) | 437, 452, 1052, 1133 |
| BstDEI | CTNAG | 9 cut(s) | 168, 545, 726, 862, 1058, 1127, 1203, 1250, 1274 |
| BstF5I | GGATG | 2 cut(s) | 16, 190 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1132 |
| BstNI | CCWGG | 1 cut(s) | 1193 |
| BstNSI | RCATGY | 1 cut(s) | 1261 |
| BstSCI | CCNGG | 1 cut(s) | 1191 |
| BstV1I | GCAGC | 2 cut(s) | 338, 941 |
| BstV2I | GAAGAC | 1 cut(s) | 866 |
| BstX2I | RGATCY | 3 cut(s) | 37, 541, 923 |
| BstYI | RGATCY | 3 cut(s) | 37, 541, 923 |
| BtrI | CACGTC | 1 cut(s) | 482 |
| BtsCI | GGATG | 2 cut(s) | 16, 190 |
| BtsI | GCAGTG | 1 cut(s) | 326 |
| BtsIMutI | CAGTG | 1 cut(s) | 326 |
| Cac8I | GCNNGC | 4 cut(s) | 437, 452, 1052, 1133 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1281 |
| CciI | TCATGA | 1 cut(s) | 468 |
| Cfr13I | GGNCC | 2 cut(s) | 14, 737 |
| CseI | GACGC | 1 cut(s) | 517 |
| Csp6I | GTAC | 4 cut(s) | 989, 1183, 1224, 1247 |
| CviAII | CATG | 2 cut(s) | 469, 1258 |
| CviQI | GTAC | 4 cut(s) | 989, 1183, 1224, 1247 |
| DdeI | CTNAG | 9 cut(s) | 168, 545, 726, 862, 1058, 1127, 1203, 1250, 1274 |
| Eam1104I | CTCTTC | 3 cut(s) | 119, 261, 1220 |
| EarI | CTCTTC | 3 cut(s) | 119, 261, 1220 |
| Ecl136II | GAGCTC | 1 cut(s) | 1131 |
| Eco24I | GRGCYC | 1 cut(s) | 1133 |
| Eco47I | GGWCC | 2 cut(s) | 14, 737 |
| Eco53kI | GAGCTC | 1 cut(s) | 1131 |
| EcoICRI | GAGCTC | 1 cut(s) | 1131 |
| EcoO109I | RGGNCCY | 1 cut(s) | 737 |
| EcoRII | CCWGG | 1 cut(s) | 1191 |
| EcoT22I | ATGCAT | 1 cut(s) | 1324 |
| EcoT38I | GRGCYC | 1 cut(s) | 1133 |
| FaeI | CATG | 2 cut(s) | 472, 1261 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 642, 674 |
| FaqI | GGGAC | 1 cut(s) | 1268 |
| FatI | CATG | 2 cut(s) | 468, 1257 |
| FauNDI | CATATG | 1 cut(s) | 667 |
| FbaI | TGATCA | 2 cut(s) | 465, 1099 |
| Fnu4HI | GCNGC | 5 cut(s) | 352, 955, 1344, 1366, 1369 |
| FokI | GGATG | 2 cut(s) | 23, 197 |
| FriOI | GRGCYC | 1 cut(s) | 1133 |
| Fsp4HI | GCNGC | 5 cut(s) | 352, 955, 1344, 1366, 1369 |
| FspBI | CTAG | 2 cut(s) | 710, 1221 |
| GluI | GCNGC | 5 cut(s) | 352, 955, 1344, 1366, 1369 |
| HgaI | GACGC | 1 cut(s) | 517 |
| Hin1II | CATG | 2 cut(s) | 472, 1261 |
| HincII | GTYRAC | 3 cut(s) | 49, 445, 765 |
| HindII | GTYRAC | 3 cut(s) | 49, 445, 765 |
| HindIII | AAGCTT | 1 cut(s) | 212 |
| HinfI | GANTC | 5 cut(s) | 241, 274, 662, 722, 1022 |
| HpaI | GTTAAC | 3 cut(s) | 49, 445, 765 |
| Hpy166II | GTNNAC | 6 cut(s) | 49, 148, 445, 479, 507, 765 |
| Hpy188III | TCNNGA | 9 cut(s) | 20, 28, 278, 341, 469, 641, 659, 984, 995 |
| Hpy8I | GTNNAC | 6 cut(s) | 49, 148, 445, 479, 507, 765 |
| Hpy99I | CGWCG | 1 cut(s) | 1118 |
| HpyAV | CCTTC | 5 cut(s) | 333, 407, 425, 937, 1147 |
| HpyCH4III | ACNGT | 3 cut(s) | 406, 582, 1283 |
| HpyCH4IV | ACGT | 2 cut(s) | 481, 702 |
| HpyCH4V | TGCA | 5 cut(s) | 501, 957, 1073, 1322, 1365 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1132 |
| HpyF3I | CTNAG | 9 cut(s) | 168, 545, 726, 862, 1058, 1127, 1203, 1250, 1274 |
| HpySE526I | ACGT | 2 cut(s) | 481, 702 |
| Hsp92II | CATG | 2 cut(s) | 472, 1261 |
| Ksp22I | TGATCA | 2 cut(s) | 465, 1099 |
| KspAI | GTTAAC | 3 cut(s) | 49, 445, 765 |
| LguI | GCTCTTC | 1 cut(s) | 1220 |
| LmnI | GCTCC | 1 cut(s) | 605 |
| Lsp1109I | GCAGC | 2 cut(s) | 338, 941 |
| LweI | GCATC | 3 cut(s) | 1030, 1063, 1331 |
| MaeI | CTAG | 2 cut(s) | 710, 1221 |
| MaeII | ACGT | 2 cut(s) | 481, 702 |
| MaeIII | GTNAC | 4 cut(s) | 560, 687, 772, 1166 |
| MfeI | CAATTG | 1 cut(s) | 1372 |
| MflI | RGATCY | 3 cut(s) | 37, 541, 923 |
| MhlI | GDGCHC | 1 cut(s) | 1133 |
| MluCI | AATT | 8 cut(s) | 63, 385, 678, 788, 888, 1003, 1120, 1372 |
| MmeI | TCCRAC | 1 cut(s) | 80 |
| MnlI | CCTC | 9 cut(s) | 27, 51, 63, 262, 750, 928, 1002, 1005, 1245 |
| Mph1103I | ATGCAT | 1 cut(s) | 1324 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1282 |
| MseI | TTAA | 8 cut(s) | 48, 383, 444, 513, 600, 648, 764, 908 |
| MslI | CAYNNNNRTG | 1 cut(s) | 183 |
| MspR9I | CCNGG | 1 cut(s) | 1193 |
| MunI | CAATTG | 1 cut(s) | 1372 |
| MvaI | CCWGG | 1 cut(s) | 1193 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1132 |
| NdeI | CATATG | 1 cut(s) | 667 |
| NlaIII | CATG | 2 cut(s) | 472, 1261 |
| NlaIV | GGNNCC | 1 cut(s) | 925 |
| NmuCI | GTSAC | 2 cut(s) | 560, 687 |
| NsiI | ATGCAT | 1 cut(s) | 1324 |
| NspI | RCATGY | 1 cut(s) | 1261 |
| NspV | TTCGAA | 1 cut(s) | 1333 |
| PagI | TCATGA | 1 cut(s) | 468 |
| PciI | ACATGT | 1 cut(s) | 1257 |
| PciSI | GCTCTTC | 1 cut(s) | 1220 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1282 |
| PfeI | GAWTC | 5 cut(s) | 241, 274, 662, 722, 1022 |
| PkrI | GCNGC | 5 cut(s) | 353, 956, 1345, 1367, 1370 |
| PpuMI | RGGWCCY | 1 cut(s) | 737 |
| PscI | ACATGT | 1 cut(s) | 1257 |
| Psp124BI | GAGCTC | 1 cut(s) | 1133 |
| Psp5II | RGGWCCY | 1 cut(s) | 737 |
| Psp6I | CCWGG | 1 cut(s) | 1191 |
| PspGI | CCWGG | 1 cut(s) | 1191 |
| PspN4I | GGNNCC | 1 cut(s) | 925 |
| PspPI | GGNCC | 2 cut(s) | 14, 737 |
| PspPPI | RGGWCCY | 1 cut(s) | 737 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1281 |
| PsuI | RGATCY | 3 cut(s) | 37, 541, 923 |
| RsaI | GTAC | 4 cut(s) | 990, 1184, 1225, 1248 |
| RsaNI | GTAC | 4 cut(s) | 989, 1183, 1224, 1247 |
| RseI | CAYNNNNRTG | 1 cut(s) | 183 |
| SacI | GAGCTC | 1 cut(s) | 1133 |
| SapI | GCTCTTC | 1 cut(s) | 1220 |
| SaqAI | TTAA | 8 cut(s) | 48, 383, 444, 513, 600, 648, 764, 908 |
| SatI | GCNGC | 5 cut(s) | 352, 955, 1344, 1366, 1369 |
| Sau96I | GGNCC | 2 cut(s) | 14, 737 |
| ScrFI | CCNGG | 1 cut(s) | 1193 |
| SduI | GDGCHC | 1 cut(s) | 1133 |
| SfaNI | GCATC | 3 cut(s) | 1030, 1063, 1331 |
| SfuI | TTCGAA | 1 cut(s) | 1333 |
| SinI | GGWCC | 2 cut(s) | 14, 737 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 183 |
| SmlI | CTYRAG | 1 cut(s) | 993 |
| SmoI | CTYRAG | 1 cut(s) | 993 |
| Sse9I | AATT | 8 cut(s) | 63, 385, 678, 788, 888, 1003, 1120, 1372 |
| SsiI | CCGC | 2 cut(s) | 719, 1344 |
| SspI | AATATT | 1 cut(s) | 751 |
| SspMI | CTAG | 2 cut(s) | 710, 1221 |
| SstI | GAGCTC | 1 cut(s) | 1133 |
| StyD4I | CCNGG | 1 cut(s) | 1191 |
| TaaI | ACNGT | 3 cut(s) | 406, 582, 1283 |
| TaiI | ACGT | 2 cut(s) | 484, 705 |
| TaqI | TCGA | 4 cut(s) | 27, 342, 1045, 1333 |
| TaqII | GACCGA | 2 cut(s) | 869, 1302 |
| TasI | AATT | 8 cut(s) | 63, 385, 678, 788, 888, 1003, 1120, 1372 |
| TatI | WGTACW | 3 cut(s) | 1182, 1223, 1246 |
| TauI | GCSGC | 1 cut(s) | 1346 |
| TfiI | GAWTC | 5 cut(s) | 241, 274, 662, 722, 1022 |
| Tru1I | TTAA | 8 cut(s) | 48, 383, 444, 513, 600, 648, 764, 908 |
| Tru9I | TTAA | 8 cut(s) | 48, 383, 444, 513, 600, 648, 764, 908 |
| TscAI | CASTG | 1 cut(s) | 333 |
| TseFI | GTSAC | 2 cut(s) | 560, 687 |
| TseI | GCWGC | 4 cut(s) | 351, 954, 1365, 1368 |
| Tsp45I | GTSAC | 2 cut(s) | 560, 687 |
| TspDTI | ATGAA | 7 cut(s) | 207, 263, 279, 386, 426, 484, 519 |
| TspRI | CASTG | 1 cut(s) | 333 |
| VpaK11BI | GGWCC | 2 cut(s) | 14, 737 |
| XapI | RAATTY | 2 cut(s) | 385, 1120 |
| XceI | RCATGY | 1 cut(s) | 1261 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1282 |
| XspI | CTAG | 2 cut(s) | 710, 1221 |
| Zsp2I | ATGCAT | 1 cut(s) | 1324 |