Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Forward (+)

8018868 .. 8024328

Gene Structure 5461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G111800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATGGACATGGATAACTTCCTGGACTTTGAGTCAGAAGACCCACTCCTAAATCGTCCTGCTGTTACTAAGAAAAGGAAGAAGGCTATTGGGTTGGATGATCTTTTGACTGATTTCTACAAGGAAGAAGACAAGCTTGTTGAAAAGAAATCTAAGCGTGCAAAACCACGAAGGAACAATGATTCAGATGAGGAAGATAATCATAAAGAGGCTGCGCTCTATGACATTGTCGATAAGTGTGAAAACGAGATGAGAGAAATAAGCGGTAAGGAGGACAGCTTTGTGTGGGGCATATGCGCTTTTGGAGACCAGAAAACCCCACCTCCTCTATCTTTTCCAGAGATTAAAAGTTGCACACTCTTGCAGTCTTTCATTAATGACGAGCTCAACTCTGTGATTGATATCTCTACAGAAAATGGAGACACCTTCCTTGAAGGATTACTAGTAAATGGCTGGCTTTCAAAATTGGTTTTCGCCAGTCGTCATCTAGAAAAATCAGTGGCCACATGGACCTTTAATTTGATGCTATATTCACCCAAAGAAGATTTGAGGGCATCTGCATGTGACTTCTGGTGTGCTATTCTCTCATTTGAAAATGAGGTTGACTTACAGCCTATCAAAATTGATTGGTTTCCTAGCTATTCTGAGTTAAAAATAGCTCTTGAAAGCTATGGTTTTCTATTCAAACTTTCATCTAACACGGATTCTGCTTGTTCCAATTCTGCTTCTCGAGGTCCAGCTCAGAATATTAGAGCTTGGCTTAAACTTGCAACTGCTTCTTGTCAAATGAGAAACAAAAGGGCTATGTACTTGACCTCAGAAGCCGAAGAGTTGATTGAAGTAATTATTTGTCTATTTTCTGACCGCCAACTTCAAGGTCTTCTTGTGCTTTTGCATGAATGCATGCAGTCAGCTATCAGTTACTTCACTAACGAAGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTTGCAGAGTACCTAAGGACTTGAACTGCCTAAGAATTGTGGAATGCATTTCGGTAGTCAATACTCGCTCTAAGCTGTTTAGAAGTACAGTTGCCCATCAAATCCTTCTTAGTTATTTTGATCATAAGGCCCCTTCTGAAGAAGGGATCCTAAAACTGCTTATCCCAATCAATGTCAAAGACAAAAGCTGTGATTTTTTCAAGATGTACATACACTTGGTGTTGACAGAGAATTGGCTCTTGTCTAATCAACTTTTAGAAGACAAGCCAGTCTTGAAGGCAATGTGGCGCCTCTACTTAAGAAACTGTTCTTGCATGATAGCCAGCACTGACTTGCGGTGTTTTGCATCTAAGGTCCGCAACAAGGCATCATATCTTCTGCAAGGCACTGTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

458

Amino Acids

52.32

Weight (kDa)

5.45

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1244
AccB1I	GGYRCC	1 cut(s)	1263
AciI	CCGC	4 cut(s)	264, 865, 1312, 1333
AclWI	GGATC	2 cut(s)	1117, 1130
AcoI	YGGCCR	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	1134
AcyI	GRCGYC	1 cut(s)	1264
AdeI	CACNNNGTG	1 cut(s)	1195
AfaI	GTAC	4 cut(s)	809, 987, 1063, 1184
AfiI	CCNNNNNNNGG	1 cut(s)	1339
AflII	CTTAAG	1 cut(s)	1273
AhdI	GACNNNNNGTC	1 cut(s)	31
AhlI	ACTAGT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	300, 414
AlwI	GGATC	2 cut(s)	1117, 1130
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	2 cut(s)	501, 1104
ApeKI	GCWGC	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
AseI	ATTAAT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	1282
AspLEI	GCGC	3 cut(s)	217, 299, 1266
AspS9I	GGNCC	4 cut(s)	510, 734, 1105, 1330
AsuHPI	GGTGA	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	3 cut(s)	510, 734, 1330
AxyI	CCTNAGG	1 cut(s)	990
BalI	TGGCCA	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	1122
BanI	GGYRCC	1 cut(s)	1263
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	4 cut(s)	45, 135, 872, 1242
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	1080
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	2 cut(s)	300, 414
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	4 cut(s)	443, 488, 636, 948
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	1267
BfrI	CTTAAG	1 cut(s)	1273
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	3 cut(s)	510, 734, 1330
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	4 cut(s)	510, 734, 1105, 1330
BmiI	GGNNCC	3 cut(s)	1107, 1124, 1265
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	4 cut(s)	513, 563, 1331, 1352
BpiI	GAAGAC	4 cut(s)	45, 135, 872, 1242
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BsaBI	GATNNNNATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	1264
BsaI	GGTCTC	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	1339
Bse1I	ACTGG	2 cut(s)	477, 1244
Bse21I	CCTNAGG	1 cut(s)	990
Bse3DI	GCAATG	1 cut(s)	1263
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	1339
BseMI	GCAATG	1 cut(s)	1263
BseMII	CTCAG	3 cut(s)	636, 755, 831
BseNI	ACTGG	2 cut(s)	477, 1244
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	2 cut(s)	503, 1106
BshNI	GGYRCC	1 cut(s)	1263
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	729
BslI	CCNNNNNNNGG	1 cut(s)	1339
BsmAI	GTCTC	2 cut(s)	300, 414
BsmI	GAATGC	2 cut(s)	905, 1025
BsnI	GGCC	2 cut(s)	503, 1106
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp1407I	TGTACA	1 cut(s)	1182
Bsp143I	GATC	3 cut(s)	100, 1096, 1122
BspACI	CCGC	4 cut(s)	264, 865, 1312, 1333
BspANI	GGCC	2 cut(s)	503, 1106
BspCNI	CTCAG	3 cut(s)	637, 754, 830
BspLI	GGNNCC	3 cut(s)	1107, 1124, 1265
BspPI	GGATC	2 cut(s)	1117, 1130
BspT107I	GGYRCC	1 cut(s)	1263
BspTI	CTTAAG	1 cut(s)	1273
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	1263
BsrGI	TGTACA	1 cut(s)	1182
BsrI	ACTGG	2 cut(s)	477, 1244
BssMI	GATC	3 cut(s)	100, 1096, 1122
BssNI	GRCGYC	1 cut(s)	1264
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	1066, 1283, 1366
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	1 cut(s)	1264
BstAFI	CTTAAG	1 cut(s)	1273
BstAUI	TGTACA	1 cut(s)	1182
BstC8I	GCNNGC	5 cut(s)	159, 455, 905, 979, 1300
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	1267
BstHHI	GCGC	3 cut(s)	217, 299, 1266
BstKTI	GATC	3 cut(s)	103, 1099, 1125
BstMAI	GTCTC	2 cut(s)	300, 414
BstMBI	GATC	3 cut(s)	100, 1096, 1122
BstMWI	GCNNNNNNNGC	1 cut(s)	1368
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	2 cut(s)	564, 907
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	4 cut(s)	45, 135, 872, 1242
BstX2I	RGATCY	1 cut(s)	1122
BstYI	RGATCY	1 cut(s)	1122
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	2 cut(s)	503, 1106
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	504, 1302, 1362
Cac8I	GCNNGC	5 cut(s)	159, 455, 905, 979, 1300
CfoI	GCGC	3 cut(s)	217, 299, 1266
Cfr13I	GGNCC	4 cut(s)	510, 734, 1105, 1330
Csp6I	GTAC	4 cut(s)	808, 986, 1062, 1183
CviAII	CATG	6 cut(s)	10, 507, 561, 896, 904, 1291
CviQI	GTAC	4 cut(s)	808, 986, 1062, 1183
DinI	GGCGCC	1 cut(s)	1265
DpnI	GATC	3 cut(s)	102, 1098, 1124
DpnII	GATC	3 cut(s)	100, 1096, 1122
DraIII	CACNNNGTG	1 cut(s)	1195
DrdI	GACNNNNNNGTC	1 cut(s)	1244
DriI	GACNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	1244
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	822
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	822
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	3 cut(s)	510, 734, 1330
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	1134
Eco81I	CCTNAGG	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	1105
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	403
EcoT22I	ATGCAT	2 cut(s)	905, 1025
EcoT38I	GRGCYC	1 cut(s)	387
EgeI	GGCGCC	1 cut(s)	1265
EheI	GGCGCC	1 cut(s)	1265
FaeI	CATG	6 cut(s)	13, 510, 564, 899, 907, 1294
FalI	AAGNNNNNCTT	6 cut(s)	120, 152, 867, 899, 1232, 1264
FatI	CATG	6 cut(s)	9, 506, 560, 895, 903, 1290
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	4 cut(s)	443, 488, 636, 948
GlaI	GCGC	3 cut(s)	216, 298, 1265
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	1267
HaeIII	GGCC	2 cut(s)	503, 1106
HhaI	GCGC	3 cut(s)	217, 299, 1266
Hin1I	GRCGYC	1 cut(s)	1264
Hin1II	CATG	6 cut(s)	13, 510, 564, 899, 907, 1294
Hin6I	GCGC	3 cut(s)	215, 297, 1264
HinP1I	GCGC	3 cut(s)	215, 297, 1264
HincII	GTYRAC	2 cut(s)	604, 1200
HindII	GTYRAC	2 cut(s)	604, 1200
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	32, 182, 704, 944
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	2 cut(s)	604, 1200
Hpy188I	TCNGA	7 cut(s)	37, 187, 646, 744, 820, 862, 1114
Hpy188III	TCNNGA	6 cut(s)	338, 488, 662, 729, 1177, 1249
Hpy8I	GTNNAC	2 cut(s)	604, 1200
HpyAV	CCTTC	8 cut(s)	76, 165, 428, 436, 1091, 1112, 1119, 1246
HpyCH4III	ACNGT	3 cut(s)	1066, 1283, 1366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1368
Hsp92I	GRCGYC	1 cut(s)	1264
Hsp92II	CATG	6 cut(s)	13, 510, 564, 899, 907, 1294
HspAI	GCGC	3 cut(s)	215, 297, 1264
KasI	GGCGCC	1 cut(s)	1263
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	3 cut(s)	100, 1096, 1122
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	4 cut(s)	513, 563, 1331, 1352
MaeI	CTAG	4 cut(s)	443, 488, 636, 948
MaeIII	GTNAC	3 cut(s)	64, 563, 920
MalI	GATC	3 cut(s)	102, 1098, 1124
MboI	GATC	3 cut(s)	100, 1096, 1122
MflI	RGATCY	1 cut(s)	1122
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	7 cut(s)	464, 517, 621, 718, 843, 1011, 1207
MluNI	TGGCCA	1 cut(s)	503
Mly113I	GGCGCC	1 cut(s)	1264
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	503
Mph1103I	ATGCAT	2 cut(s)	905, 1025
MroXI	GAANNNNTTC	1 cut(s)	1282
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	6 cut(s)	345, 375, 516, 650, 762, 1274
MslI	CAYNNNNRTG	1 cut(s)	559
Msp20I	TGGCCA	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	1273
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	2 cut(s)	905, 1025
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	1368
NarI	GGCGCC	1 cut(s)	1264
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	3 cut(s)	100, 1096, 1122
NlaIII	CATG	6 cut(s)	13, 510, 564, 899, 907, 1294
NlaIV	GGNNCC	3 cut(s)	1107, 1124, 1265
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	2 cut(s)	905, 1025
NspI	RCATGY	2 cut(s)	564, 907
PaeI	GCATGC	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	729
PctI	GAATGC	2 cut(s)	905, 1025
PdmI	GAANNNNTTC	1 cut(s)	1282
PfeI	GAWTC	3 cut(s)	182, 704, 944
PflFI	GACNNNGTC	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	40
PluTI	GGCGCC	1 cut(s)	1267
PpsI	GAGTC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	1107, 1124, 1265
PspPI	GGNCC	4 cut(s)	510, 734, 1105, 1330
PsuI	RGATCY	1 cut(s)	1122
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	4 cut(s)	809, 987, 1063, 1184
RsaNI	GTAC	4 cut(s)	808, 986, 1062, 1183
RseI	CAYNNNNRTG	1 cut(s)	559
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	6 cut(s)	345, 375, 516, 650, 762, 1274
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	3 cut(s)	100, 1096, 1122
Sau96I	GGNCC	4 cut(s)	510, 734, 1105, 1330
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	4 cut(s)	513, 563, 1331, 1352
SfcI	CTRYAG	1 cut(s)	408
SfoI	GGCGCC	1 cut(s)	1265
Sfr274I	CTCGAG	1 cut(s)	729
SinI	GGWCC	3 cut(s)	510, 734, 1330
SlaI	CTCGAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	729, 1273
SmoI	CTYRAG	2 cut(s)	729, 1273
SpeI	ACTAGT	1 cut(s)	442
SphI	GCATGC	1 cut(s)	907
Sse9I	AATT	7 cut(s)	464, 517, 621, 718, 843, 1011, 1207
SsiI	CCGC	4 cut(s)	264, 865, 1312, 1333
SspDI	GGCGCC	1 cut(s)	1263
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	4 cut(s)	443, 488, 636, 948
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	1066, 1283, 1366
TaqI	TCGA	2 cut(s)	231, 730
TasI	AATT	7 cut(s)	464, 517, 621, 718, 843, 1011, 1207
TatI	WGTACW	3 cut(s)	807, 1061, 1182
TfiI	GAWTC	3 cut(s)	182, 704, 944
Tru1I	TTAA	6 cut(s)	345, 375, 516, 650, 762, 1274
Tru9I	TTAA	6 cut(s)	345, 375, 516, 650, 762, 1274
TscAI	CASTG	3 cut(s)	504, 1309, 1369
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	361, 681, 912
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	3 cut(s)	504, 1309, 1369
Tth111I	GACNNNGTC	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	1273
VpaK11BI	GGWCC	3 cut(s)	510, 734, 1330
VspI	ATTAAT	1 cut(s)	375
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	564, 907
XhoI	CTCGAG	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	1282
XspI	CTAG	4 cut(s)	443, 488, 636, 948
Zsp2I	ATGCAT	2 cut(s)	905, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.