Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Reverse (-)

24169589 .. 24175826

Gene Structure 6238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30770.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGATGGACTTCGATCAACTTCTCGAACTCGACAACGACGACCCAGTTCTCAACCCCCCTACTGCTAAGAAAAGGAAGAAAGTTATTGGGTTGGATGATCTGTTGACTGATTTCTACAAAGAAGAAGACAAACTTGTTGAAAAGGCAGCCAGAAAAGCAAAGGCAAAGGCGCAGCGGAAGGATGATTCAGACGAGGAGGATCAACACCAAGAGGCTTCCCTCTGTCAACTTGTTGATACTTGCGAAAACCAGATAAAAGATATAGGTGGCAAGGAGGATAGCTTTGTGTGGGGGATATGTGTTTTCAGAGACCAGAAATCCCCACCTCCTCTAGCTTTTCCGGAGCTTGAGAGTTGCGCGCTCTTGCAGTCTTTCATGAACAACAAGCTCAATTCTGAATTTCAGATCTGTTTGGACAACGGGAACACTTTGCTGGAAGGGTTATTAGTAAATGGCTGGCTTTCAAATGTAGTTTTTGCTAAGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCTTATTCATCAATAGAAGAGTTGAGGACATCTGCGTGTGACTTCTGGTGTGCTATTCTTTCATCCAAAAATGAGCCGGTTACAATTGATTGGTTCGCTAGCTATTCTGAGTTAAAAGTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTTTTCAAATATGGAAAATGTTTATTCCAATTCTGTTCGTCAAGGTCCAGCCCAGAACATTAGAGCGTGGATCAAATATGTAACTACTGCTTGTCAAGTGAGGAGCAAAAAAGCTATATATTTGACCTCAGAAGCAGAAGAGTTGATGGAAGTTATAATTTATCTGTTTCTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTCTGCATGAATGCATGCAGTCAGCCATCAGTTACTTCACAGAAGATGAATGGCAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTTGCAGAATCCCCAAGGATGTGAACTGCTTAAGAATTGTAGAATGCATTTCGGGAGCCAAGACTCGCAGCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATAGTTGCTTTGATTATAAGGCCCGGGATGAAGTAGAGATCCTAAATTTGTTAATCTCAGTTAATGTGAAAGAGAAAAACTGTGATTTCTTCAAGCTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAATCAAGAGAATCGAGTCTTGATTGAAATGTGGCGTCTGTACTTACGAAACTGTTCTTGCCTGATCGCCAGTACAGATTTGAGATCCTTTGCCTCAAAGGCCCGTAATAAGGCTTCATATCTTCTGCAAGGCACCATCACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

452

Amino Acids

51.79

Weight (kDa)

5.23

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	833, 1089
AccB1I	GGYRCC	1 cut(s)	1340
AccI	GTMKAC	1 cut(s)	1176
AccII	CGCG	1 cut(s)	359
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	2 cut(s)	175, 853
AclWI	GGATC	4 cut(s)	207, 755, 1105, 1287
AcsI	RAATTY	2 cut(s)	398, 1117
AcyI	GRCGYC	1 cut(s)	1243
AfaI	GTAC	2 cut(s)	1250, 1282
AfiI	CCNNNNNNNGG	2 cut(s)	1197, 1318
AflII	CTTAAG	1 cut(s)	994
AgsI	TTSAA	8 cut(s)	140, 465, 656, 676, 684, 863, 1165, 1235
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	4 cut(s)	207, 755, 1105, 1287
Ama87I	CYCGRG	1 cut(s)	1095
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	2 cut(s)	1092, 1308
ApeKI	GCWGC	3 cut(s)	146, 172, 1032
ApoI	RAATTY	2 cut(s)	398, 1117
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
Asp700I	GAANNNNTTC	1 cut(s)	1261
AspLEI	GCGC	3 cut(s)	172, 359, 361
AspS9I	GGNCC	4 cut(s)	513, 722, 1093, 1309
AsuC2I	CCSGG	2 cut(s)	1096, 1097
AsuHPI	GGTGA	1 cut(s)	1339
AsuNHI	GCTAGC	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	1095
AvaII	GGWCC	2 cut(s)	513, 722
BanI	GGYRCC	1 cut(s)	1340
BarI	GAAGNNNNNNTAC	2 cut(s)	1306, 1338
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	158, 184, 1044
BccI	CCATC	4 cut(s)	520, 817, 911, 1352
BcnI	CCSGG	2 cut(s)	1096, 1097
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	4 cut(s)	332, 627, 848, 936
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	994
BglI	GCCNNNNNGGC	1 cut(s)	1307
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	3 cut(s)	147, 173, 1033
BlsI	GCNGC	3 cut(s)	148, 174, 1034
Bme1390I	CCNGG	2 cut(s)	1096, 1097
Bme18I	GGWCC	2 cut(s)	513, 722
BmeT110I	CYCGRG	1 cut(s)	1095
BmgT120I	GGNCC	4 cut(s)	513, 722, 1093, 1309
BmiI	GGNNCC	2 cut(s)	1021, 1342
BmrFI	CCNGG	2 cut(s)	1096, 1097
BmrI	ACTGGG	1 cut(s)	38
BmtI	GCTAGC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	1096, 1097
BsaHI	GRCGYC	1 cut(s)	1243
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	978, 1095
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	1197, 1318
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	44, 1278
BseAI	TCCGGA	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	978, 1095
BseGI	GGATG	5 cut(s)	100, 187, 590, 988, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	1197, 1318
BseMII	CTCAG	3 cut(s)	627, 819, 1143
BseNI	ACTGG	2 cut(s)	44, 1278
BsePI	GCGCGC	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	209, 318, 793
BseXI	GCAGC	3 cut(s)	158, 184, 1044
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	1094, 1310
BshNI	GGYRCC	1 cut(s)	1340
BsiHKCI	CYCGRG	1 cut(s)	1095
BsiSI	CCGG	3 cut(s)	341, 605, 1096
BslI	CCNNNNNNNGG	2 cut(s)	1197, 1318
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	2 cut(s)	893, 1013
BsnI	GGCC	2 cut(s)	1094, 1310
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	1095
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
BspACI	CCGC	2 cut(s)	175, 853
BspANI	GGCC	2 cut(s)	1094, 1310
BspCNI	CTCAG	3 cut(s)	628, 818, 1142
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	359
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	1021, 1342
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	4 cut(s)	207, 755, 1105, 1287
BspT107I	GGYRCC	1 cut(s)	1340
BspTI	CTTAAG	1 cut(s)	994
BspTNI	GGTCTC	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	44, 1278
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	978, 1095
BssHII	GCGCGC	1 cut(s)	357
BssMI	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
BssNAI	GTATAC	1 cut(s)	1177
BssNI	GRCGYC	1 cut(s)	1243
BssT1I	CCWWGG	1 cut(s)	978
Bst1107I	GTATAC	1 cut(s)	1177
Bst4CI	ACNGT	2 cut(s)	1154, 1262
Bst6I	CTCTTC	2 cut(s)	540, 810
BstACI	GRCGYC	1 cut(s)	1243
BstAFI	CTTAAG	1 cut(s)	994
BstC8I	GCNNGC	7 cut(s)	359, 458, 628, 857, 893, 967, 1037
BstDEI	CTNAG	5 cut(s)	66, 480, 636, 805, 1129
BstF5I	GGATG	5 cut(s)	100, 187, 590, 988, 1105
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	172, 359, 361
BstKTI	GATC	8 cut(s)	16, 100, 202, 408, 750, 1113, 1275, 1295
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 1307
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	2 cut(s)	1094, 1095
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	3 cut(s)	158, 184, 1044
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	3 cut(s)	405, 1110, 1292
BstYI	RGATCY	3 cut(s)	405, 1110, 1292
BstZ17I	GTATAC	1 cut(s)	1177
BsuRI	GGCC	2 cut(s)	1094, 1310
BtsCI	GGATG	5 cut(s)	100, 187, 590, 988, 1105
Cac8I	GCNNGC	7 cut(s)	359, 458, 628, 857, 893, 967, 1037
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	3 cut(s)	172, 359, 361
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	4 cut(s)	513, 722, 1093, 1309
Cfr9I	CCCGGG	1 cut(s)	1095
CseI	GACGC	1 cut(s)	1232
Csp6I	GTAC	2 cut(s)	1249, 1281
CviAII	CATG	5 cut(s)	376, 488, 508, 884, 892
CviQI	GTAC	2 cut(s)	1249, 1281
DdeI	CTNAG	5 cut(s)	66, 480, 636, 805, 1129
DpnI	GATC	8 cut(s)	15, 99, 201, 407, 749, 1112, 1274, 1294
DpnII	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
Eam1104I	CTCTTC	2 cut(s)	540, 810
EarI	CTCTTC	2 cut(s)	540, 810
Eco130I	CCWWGG	1 cut(s)	978
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	513, 722
Eco88I	CYCGRG	1 cut(s)	1095
EcoT14I	CCWWGG	1 cut(s)	978
EcoT22I	ATGCAT	2 cut(s)	893, 1013
ErhI	CCWWGG	1 cut(s)	978
FaeI	CATG	5 cut(s)	379, 491, 511, 887, 895
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 636, 668
FatI	CATG	5 cut(s)	375, 487, 507, 883, 891
FblI	GTMKAC	1 cut(s)	1176
Fnu4HI	GCNGC	3 cut(s)	147, 173, 1033
FokI	GGATG	5 cut(s)	107, 194, 577, 995, 1112
Fsp4HI	GCNGC	3 cut(s)	147, 173, 1033
FspBI	CTAG	4 cut(s)	332, 627, 848, 936
GlaI	GCGC	3 cut(s)	171, 358, 360
GluI	GCNGC	3 cut(s)	147, 173, 1033
HaeIII	GGCC	2 cut(s)	1094, 1310
HapII	CCGG	3 cut(s)	341, 605, 1096
HgaI	GACGC	1 cut(s)	1232
HhaI	GCGC	3 cut(s)	172, 359, 361
Hin1I	GRCGYC	1 cut(s)	1243
Hin1II	CATG	5 cut(s)	379, 491, 511, 887, 895
Hin6I	GCGC	3 cut(s)	170, 357, 359
HinP1I	GCGC	3 cut(s)	170, 357, 359
HincII	GTYRAC	3 cut(s)	105, 227, 1188
HindII	GTYRAC	3 cut(s)	105, 227, 1188
HinfI	GANTC	5 cut(s)	185, 972, 1027, 1219, 1224
HpaII	CCGG	3 cut(s)	341, 605, 1096
HphI	GGTGA	1 cut(s)	1339
Hpy166II	GTNNAC	6 cut(s)	105, 227, 513, 988, 1177, 1188
Hpy188I	TCNGA	6 cut(s)	190, 308, 397, 405, 637, 808
Hpy188III	TCNNGA	8 cut(s)	23, 341, 376, 653, 848, 1017, 1214, 1228
Hpy8I	GTNNAC	6 cut(s)	105, 227, 513, 988, 1177, 1188
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	172, 431, 1079
HpyCH4III	ACNGT	2 cut(s)	1154, 1262
HpyCH4V	TGCA	7 cut(s)	367, 883, 891, 895, 969, 1011, 1336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 1307
HpyF3I	CTNAG	5 cut(s)	66, 480, 636, 805, 1129
Hsp92I	GRCGYC	1 cut(s)	1243
Hsp92II	CATG	5 cut(s)	379, 491, 511, 887, 895
HspAI	GCGC	3 cut(s)	170, 357, 359
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
LmnI	GCTCC	3 cut(s)	343, 780, 1019
Lsp1109I	GCAGC	3 cut(s)	158, 184, 1044
MaeI	CTAG	4 cut(s)	332, 627, 848, 936
MaeIII	GTNAC	4 cut(s)	566, 607, 757, 908
MalI	GATC	8 cut(s)	15, 99, 201, 407, 749, 1112, 1274, 1294
MboI	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
MboII	GAAGA	9 cut(s)	88, 134, 137, 557, 827, 932, 958, 1153, 1322
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	3 cut(s)	405, 1110, 1292
MluCI	AATT	9 cut(s)	391, 398, 520, 612, 706, 834, 999, 1117, 1195
MlyI	GAGTC	2 cut(s)	1021, 1233
MmeI	TCCRAC	1 cut(s)	72
Mph1103I	ATGCAT	2 cut(s)	893, 1013
MroI	TCCGGA	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	1261
MseI	TTAA	5 cut(s)	519, 641, 995, 1124, 1134
MslI	CAYNNNNRTG	1 cut(s)	562
MspA1I	CMGCKG	1 cut(s)	175
MspCI	CTTAAG	1 cut(s)	994
MspI	CCGG	3 cut(s)	341, 605, 1096
MspR9I	CCNGG	2 cut(s)	1096, 1097
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	2 cut(s)	893, 1013
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	155, 1307
NciI	CCSGG	2 cut(s)	1096, 1097
NdeII	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	5 cut(s)	379, 491, 511, 887, 895
NlaIV	GGNNCC	2 cut(s)	1021, 1342
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	2 cut(s)	893, 1013
NspI	RCATGY	1 cut(s)	895
PaeI	GCATGC	1 cut(s)	895
PagI	TCATGA	1 cut(s)	375
PauI	GCGCGC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	893, 1013
PdmI	GAANNNNTTC	1 cut(s)	1261
PfeI	GAWTC	3 cut(s)	185, 972, 1219
PkrI	GCNGC	3 cut(s)	148, 174, 1034
PleI	GAGTC	2 cut(s)	1021, 1232
PpsI	GAGTC	2 cut(s)	1021, 1232
PsiI	TTATAA	2 cut(s)	833, 1089
PspN4I	GGNNCC	2 cut(s)	1021, 1342
PspPI	GGNCC	4 cut(s)	513, 722, 1093, 1309
PsuI	RGATCY	3 cut(s)	405, 1110, 1292
PteI	GCGCGC	1 cut(s)	357
RsaI	GTAC	2 cut(s)	1250, 1282
RsaNI	GTAC	2 cut(s)	1249, 1281
RseI	CAYNNNNRTG	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	519, 641, 995, 1124, 1134
SatI	GCNGC	3 cut(s)	147, 173, 1033
Sau3AI	GATC	8 cut(s)	13, 97, 199, 405, 747, 1110, 1272, 1292
Sau96I	GGNCC	4 cut(s)	513, 722, 1093, 1309
SchI	GAGTC	2 cut(s)	1021, 1233
ScrFI	CCNGG	2 cut(s)	1096, 1097
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	513, 722
SmaI	CCCGGG	1 cut(s)	1097
SmiMI	CAYNNNNRTG	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	347, 994
SmoI	CTYRAG	2 cut(s)	347, 994
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	9 cut(s)	391, 398, 520, 612, 706, 834, 999, 1117, 1195
SsiI	CCGC	2 cut(s)	175, 853
SspMI	CTAG	4 cut(s)	332, 627, 848, 936
StyD4I	CCNGG	2 cut(s)	1094, 1095
StyI	CCWWGG	1 cut(s)	978
TaaI	ACNGT	2 cut(s)	1154, 1262
TaqI	TCGA	4 cut(s)	12, 24, 30, 1222
TaqII	GACCGA	1 cut(s)	1205
TasI	AATT	9 cut(s)	391, 398, 520, 612, 706, 834, 999, 1117, 1195
TatI	WGTACW	2 cut(s)	1248, 1280
TfiI	GAWTC	3 cut(s)	185, 972, 1219
Tru1I	TTAA	5 cut(s)	519, 641, 995, 1124, 1134
Tru9I	TTAA	5 cut(s)	519, 641, 995, 1124, 1134
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	3 cut(s)	146, 172, 1032
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	9 cut(s)	364, 392, 525, 579, 900, 939, 1061, 1116, 1314
TspMI	CCCGGG	1 cut(s)	1095
Vha464I	CTTAAG	1 cut(s)	994
VpaK11BI	GGWCC	2 cut(s)	513, 722
XapI	RAATTY	2 cut(s)	398, 1117
XbaI	TCTAGA	1 cut(s)	847
XceI	RCATGY	1 cut(s)	895
XmaI	CCCGGG	1 cut(s)	1095
XmiI	GTMKAC	1 cut(s)	1176
XmnI	GAANNNNTTC	1 cut(s)	1261
XspI	CTAG	4 cut(s)	332, 627, 848, 936
Zsp2I	ATGCAT	2 cut(s)	893, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.