Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Reverse (-)

35462940 .. 35464226

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0304700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGACTATTTTTCAAGCAAGTTCGAACAAAATGCGAGTTTTGGCTGTGGAAGTGATCTTAATAGTATGCTCTCTATCTAATGCAGTATTTATTTGCTGTCTCAGCTCCTCCATGCAGTTGGACCAACCCTTCACCTCTAGGCTGGAAGGAAATGAAACTGATAGGCTGGCACTCTTATCCATCAAAGACAACATACATCATGATCCCAACCGCGTCCTGAGCTCCTGGAATAACTCCATTCACTTCTGCTTGTGGCACGGTGTCACTTGCAGTTCAAGGCATCGTCAGAGAGTCACCATGCTGGACCTCAACTCCCAAGGCTTGGCTGGCTGCATATCCCCACACATCGGAAATTTGAGCTTTTTAAGGGAACTTCGCCTCCATAACAATAACTTCACTCAAGAAATTCCTCCACAAATTGGGCAATTGCGTAGGTTACAGGTACTTGATTTAGAGAATAACTCATTTACTGGCCCTATTCCTGTCAACACATCTAATTGCTTCAACCTCACCTCTCTCTATTTCAGTGGCAACAAGCTGGTGGGTGAAATTCCTTCTAATCTTGGTTTCTTGTCTAAGCTTCAAATACTTGTTTTACAAATTAATAATTTAAATGGAGAAATCCCTCCTTCATTGGGGAACCTTTCATCTCTTACCGTACTTGCTGCATATGATAACAACTTGGTGGGGAGCATACCTAGTTCTCTAGGCCAATTGAAAATGTTAACCTATTTCTCGTTGGGTGATAATAAGCTGTCTGGTACCGTCCCTCCTTCCATTTACAACCTATCTGCTATTGAAACTTTTTCTATAACGCATAACCAAATTCAGGGGAGTATTCCCTCACACTTGAGCACTGCATTTCCTAACCTCAAGTTCTTTCACATTTGGACGAATGAATTTACTGGGGTCATTCCTTTGTCGATATCCAATGCAACGAGTCTATTGTCGTTCAGTGTTGGAGGTAACAATCTAACAGGACAAGTGCCCAATTTGCAAAATCTTCATAACCTCACAAGGTTCTCTGTCATGTATAATCATCTCGGAAGTGGTAAACAGGGAGACTTGAGCTTTGTCTCAAAGTTGGTGAATGCCACACAGTTAACACGGTTGGTTTTAGCCTACAACAATTTCGGAGGCACGTTGCCCACAACAATATGCAATCTCTCAACCAGTCTCGAAATGCTTTGGGTTCATGGAAACTGTAATAACCTCGATTTTCAATCGAGCAATACTTGGCGGCAGTTTTATTCAATGAAGTATTCATTTCGATTTGGTGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

428

Amino Acids

47.32

Weight (kDa)

8.36

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	52 - 91	3.1e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	100 - 222	1.5e-12	Leucine-rich repeat region
LRR_8	PF13855	122 - 180	4.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AccB7I	CCANNNNNTGG	2 cut(s)	322, 419
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	211, 1240
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	5 cut(s)	352, 405, 549, 825, 899
AfaI	GTAC	3 cut(s)	444, 660, 763
AfiI	CCNNNNNNNGG	5 cut(s)	322, 347, 419, 635, 829
AgsI	TTSAA	8 cut(s)	14, 276, 505, 584, 718, 800, 1223, 1254
AjnI	CCWGG	1 cut(s)	224
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	7 cut(s)	105, 222, 360, 538, 580, 754, 1071
AluI	AGCT	7 cut(s)	105, 222, 360, 538, 580, 754, 1071
Alw21I	GWGCWC	2 cut(s)	224, 857
Alw26I	GTCTC	4 cut(s)	104, 1056, 1081, 1181
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	2 cut(s)	472, 709
ApeKI	GCWGC	2 cut(s)	330, 665
ApoI	RAATTY	5 cut(s)	352, 405, 549, 825, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	1055, 1087
AseI	ATTAAT	1 cut(s)	603
Asp718I	GGTACC	1 cut(s)	761
AspS9I	GGNCC	3 cut(s)	121, 304, 473
AsuHPI	GGTGA	6 cut(s)	124, 286, 502, 557, 755, 1099
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	121, 304
BaeGI	GKGCMC	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	224, 857
BbvI	GCAGC	2 cut(s)	317, 652
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	4 cut(s)	104, 1056, 1081, 1181
BfaI	CTAG	3 cut(s)	138, 699, 707
BisI	GCNGC	3 cut(s)	331, 666, 1241
BlsI	GCNGC	3 cut(s)	332, 667, 1242
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	2 cut(s)	121, 304
BmgT120I	GGNCC	3 cut(s)	121, 304, 473
BmiI	GGNNCC	2 cut(s)	641, 763
BmrFI	CCNGG	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	915
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	915
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	4 cut(s)	384, 857, 871, 1087
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	6 cut(s)	296, 326, 363, 393, 754, 784
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 347, 419, 635, 829
Bse1I	ACTGG	3 cut(s)	475, 910, 1173
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	5 cut(s)	322, 347, 419, 635, 829
BseMII	CTCAG	2 cut(s)	115, 209
BseNI	ACTGG	3 cut(s)	475, 910, 1173
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	990
BseXI	GCAGC	2 cut(s)	317, 652
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	474, 711
BshNI	GGYRCC	1 cut(s)	761
BsiHKAI	GWGCWC	2 cut(s)	224, 857
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	5 cut(s)	322, 347, 419, 635, 829
BsmAI	GTCTC	4 cut(s)	104, 1056, 1081, 1181
BsmFI	GGGAC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	2 cut(s)	474, 711
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	3 cut(s)	224, 857, 990
Bsp143I	GATC	2 cut(s)	54, 202
BspACI	CCGC	2 cut(s)	211, 1240
BspANI	GGCC	2 cut(s)	474, 711
BspCNI	CTCAG	2 cut(s)	114, 210
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	641, 763
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	475, 910, 1173
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	54, 202
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	6 cut(s)	260, 658, 766, 1101, 1110, 1205
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	168, 328
BstDEI	CTNAG	3 cut(s)	101, 218, 576
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	57, 205
BstMAI	GTCTC	4 cut(s)	104, 1056, 1081, 1181
BstMBI	GATC	2 cut(s)	54, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 219, 327, 994
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	990
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	317, 652
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	474, 711
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	3 cut(s)	532, 855, 961
Cac8I	GCNNGC	2 cut(s)	168, 328
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	3 cut(s)	121, 304, 473
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	443, 659, 762
CviAII	CATG	5 cut(s)	112, 200, 298, 1030, 1196
CviQI	GTAC	3 cut(s)	443, 659, 762
DdeI	CTNAG	3 cut(s)	101, 218, 576
DpnI	GATC	2 cut(s)	56, 204
DpnII	GATC	2 cut(s)	54, 202
DraI	TTTAAA	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	927
Eco47I	GGWCC	2 cut(s)	121, 304
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	927
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	115, 203, 301, 1033, 1199
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	5 cut(s)	111, 199, 297, 1029, 1195
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	331, 666, 1241
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	331, 666, 1241
FspBI	CTAG	3 cut(s)	138, 699, 707
GluI	GCNGC	3 cut(s)	331, 666, 1241
HaeIII	GGCC	2 cut(s)	474, 711
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	115, 203, 301, 1033, 1199
HincII	GTYRAC	3 cut(s)	487, 726, 1104
HindII	GTYRAC	3 cut(s)	487, 726, 1104
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	291, 940
HpaI	GTTAAC	2 cut(s)	726, 1104
HphI	GGTGA	6 cut(s)	124, 286, 502, 557, 755, 1099
Hpy166II	GTNNAC	4 cut(s)	487, 726, 1055, 1104
Hpy188I	TCNGA	4 cut(s)	288, 350, 1046, 1136
Hpy188III	TCNNGA	4 cut(s)	200, 217, 401, 1178
Hpy8I	GTNNAC	4 cut(s)	487, 726, 1055, 1104
HpyAV	CCTTC	5 cut(s)	139, 140, 564, 639, 783
HpyCH4III	ACNGT	6 cut(s)	260, 658, 766, 1101, 1110, 1205
HpyCH4IV	ACGT	1 cut(s)	1142
HpyCH4V	TGCA	9 cut(s)	83, 115, 270, 333, 668, 860, 935, 997, 1161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 219, 327, 994
HpyF3I	CTNAG	3 cut(s)	101, 218, 576
HpySE526I	ACGT	1 cut(s)	1142
Hsp92II	CATG	5 cut(s)	115, 203, 301, 1033, 1199
KpnI	GGTACC	1 cut(s)	765
KspAI	GTTAAC	2 cut(s)	726, 1104
Kzo9I	GATC	2 cut(s)	54, 202
LmnI	GCTCC	3 cut(s)	110, 227, 690
Lsp1109I	GCAGC	2 cut(s)	317, 652
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	138, 699, 707
MaeII	ACGT	1 cut(s)	1142
MaeIII	GTNAC	4 cut(s)	262, 292, 435, 965
MalI	GATC	2 cut(s)	56, 204
MboI	GATC	2 cut(s)	54, 202
MboII	GAAGA	1 cut(s)	995
MfeI	CAATTG	2 cut(s)	425, 713
MhlI	GDGCHC	3 cut(s)	224, 857, 990
MlyI	GAGTC	2 cut(s)	300, 949
MmeI	TCCRAC	2 cut(s)	99, 940
MseI	TTAA	6 cut(s)	59, 365, 603, 611, 725, 1103
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	2 cut(s)	425, 713
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	102, 219, 327, 994
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	2 cut(s)	54, 202
NlaIII	CATG	5 cut(s)	115, 203, 301, 1033, 1199
NlaIV	GGNNCC	2 cut(s)	641, 763
NmuCI	GTSAC	2 cut(s)	262, 292
NspV	TTCGAA	1 cut(s)	23
PagI	TCATGA	1 cut(s)	199
PctI	GAATGC	1 cut(s)	1096
PflMI	CCANNNNNTGG	2 cut(s)	322, 419
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	332, 667, 1242
PleI	GAGTC	2 cut(s)	299, 948
PpsI	GAGTC	2 cut(s)	299, 948
PshBI	ATTAAT	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	641, 763
PspPI	GGNCC	3 cut(s)	121, 304, 473
RsaI	GTAC	3 cut(s)	444, 660, 763
RsaNI	GTAC	3 cut(s)	443, 659, 762
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	6 cut(s)	59, 365, 603, 611, 725, 1103
SatI	GCNGC	3 cut(s)	331, 666, 1241
Sau3AI	GATC	2 cut(s)	54, 202
Sau96I	GGNCC	3 cut(s)	121, 304, 473
SchI	GAGTC	2 cut(s)	300, 949
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	3 cut(s)	224, 857, 990
SfaNI	GCATC	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	2 cut(s)	121, 304
SmiI	ATTTAAAT	1 cut(s)	612
SmlI	CTYRAG	4 cut(s)	399, 850, 872, 1066
SmoI	CTYRAG	4 cut(s)	399, 850, 872, 1066
SsiI	CCGC	2 cut(s)	211, 1240
SspMI	CTAG	3 cut(s)	138, 699, 707
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	316
SwaI	ATTTAAAT	1 cut(s)	612
TaaI	ACNGT	6 cut(s)	260, 658, 766, 1101, 1110, 1205
TaiI	ACGT	1 cut(s)	1145
TaqI	TCGA	6 cut(s)	23, 923, 1179, 1215, 1226, 1270
TauI	GCSGC	1 cut(s)	1243
Tru1I	TTAA	6 cut(s)	59, 365, 603, 611, 725, 1103
Tru9I	TTAA	6 cut(s)	59, 365, 603, 611, 725, 1103
TscAI	CASTG	3 cut(s)	532, 862, 961
TseFI	GTSAC	2 cut(s)	262, 292
TseI	GCWGC	2 cut(s)	330, 665
Tsp45I	GTSAC	2 cut(s)	262, 292
TspDTI	ATGAA	8 cut(s)	168, 621, 636, 912, 995, 1184, 1254, 1271
TspRI	CASTG	3 cut(s)	532, 862, 961
Van91I	CCANNNNNTGG	2 cut(s)	322, 419
VpaK11BI	GGWCC	2 cut(s)	121, 304
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	5 cut(s)	352, 405, 549, 825, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	3 cut(s)	138, 699, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.