RchiOBHm_Chr5g0056961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006346
Physical Location & Seq
Reverse (-)
60805357 .. 60811507
6151 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33382

Sequence Viewer

Length: 1377 bp
ATGATGGACTTCGATAGCCTTCTCGACTTCGAGAGCGACGAGCCAGTCCTCAACCCCCCTCCTAAGAAAAGGAAGAAAGTTATTGGGCTGGATGATCTTTTGACTGATTTCTACAAGGAAGAAGGTAAACTTGTTGAAAAGGCCAAGGCTAGGAAAGCAAAGGCCAAGGCACGGCGGAACAATGATTCGGATGAAGAGGATGAACACAGAGAGGCTTCCCTCTCTCAACTTGTTGATACGTGCGAAAACCAGATAATAGAAATAGGTGGCAAGGAGGATAGCTTTTTGTGGGGGATATGCGTTTTCGGAGACCAGAGAACCCCACCTCCCCTTGCTTTTCCTGAGCTGAAAAGTTGCACAGTCTTGCAGTCTTTCATGAAAAACAAGCTCAATTCTGAGTTTGAAATCTGTACGGACAACGGAGACACTTTGCTAGAAGGGTTATTAGTAAATGGCTGGCTTTCAAAAGTGGTTCTTGCCAGGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATCCTCTCATCCAAAAATGAGGTTGATCTACTGCATGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCGAATATGGAATATGTTGATTCCAGTTCTGGTCATCAAGGTCCAGCTCAAAATATTAGAGCGTGGATCAAATATGCAACTACTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGTTGATGGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTTTGCATGAATGCTTGCAGGCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCCAAGGATGTGAACTGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCAGCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATGGTTGTTTTGATTATAAGGCCCAGGATGAAGTAGAGATCCTAAATTTGCTAGTCTCAATCAATGTGAAAGACAAAAACTGTGATTTCTTCAAGGTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAATCAACTGAGTGAAGACAAGCAAGTATTGAATGAAATGTGGCGCCTGTACTTACGAAACTGTTCTTGCCTGATCGCCAGTACAGATTTGAGATCTTTTGCCTCTAAGGTCCGTAATAAGGCTGCATATCTCCTGCAAGGCACCATCACCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAM178

Protein Analysis

458

Amino Acids

52.34

Weight (kDa)

5.24

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 845, 1101
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 2 cut(s) 1263, 1361
AccI GTMKAC 1 cut(s) 1188
AciI CCGC 2 cut(s) 175, 865
AclWI GGATC 2 cut(s) 767, 1117
AcsI RAATTY 1 cut(s) 1129
AcyI GRCGYC 1 cut(s) 1264
AfaI GTAC 3 cut(s) 412, 1271, 1303
AfiI CCNNNNNNNGG 4 cut(s) 150, 171, 1209, 1339
AflII CTTAAG 1 cut(s) 1006
AgsI TTSAA 8 cut(s) 137, 404, 465, 668, 688, 875, 1177, 1252
AjnI CCWGG 2 cut(s) 479, 1107
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
Alw26I GTCTC 3 cut(s) 303, 417, 1144
AlwI GGATC 2 cut(s) 767, 1117
AoxI GGCC 3 cut(s) 141, 162, 1104
ApeKI GCWGC 3 cut(s) 911, 1044, 1343
ApoI RAATTY 1 cut(s) 1129
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
Asp700I GAANNNNTTC 1 cut(s) 1282
AspLEI GCGC 1 cut(s) 1266
AspS9I GGNCC 4 cut(s) 513, 734, 1105, 1330
AsuHPI GGTGA 1 cut(s) 1360
AsuII TTCGAA 1 cut(s) 695
AvaII GGWCC 3 cut(s) 513, 734, 1330
BanI GGYRCC 2 cut(s) 1263, 1361
BbsI GAAGAC 1 cut(s) 1242
BbvI GCAGC 3 cut(s) 923, 1056, 1330
BccI CCATC 3 cut(s) 520, 829, 1373
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 481, 1109
BcoDI GTCTC 3 cut(s) 303, 417, 1144
BfaI CTAG 5 cut(s) 150, 434, 639, 948, 1136
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 1267
BfrI CTTAAG 1 cut(s) 1006
BglII AGATCT 1 cut(s) 1313
BisI GCNGC 3 cut(s) 912, 1045, 1344
BlsI GCNGC 3 cut(s) 913, 1046, 1345
Bme1390I CCNGG 2 cut(s) 481, 1109
Bme18I GGWCC 3 cut(s) 513, 734, 1330
BmgT120I GGNCC 4 cut(s) 513, 734, 1105, 1330
BmiI GGNNCC 4 cut(s) 635, 1033, 1265, 1363
BmrFI CCNGG 2 cut(s) 481, 1109
BpiI GAAGAC 1 cut(s) 1242
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 695
Bsa29I ATCGAT 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 1264
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 6 cut(s) 144, 165, 480, 816, 990, 1107
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 171, 1209, 1339
Bse1I ACTGG 3 cut(s) 44, 717, 1299
BseBI CCWGG 2 cut(s) 481, 1109
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 6 cut(s) 144, 165, 480, 816, 990, 1107
BseGI GGATG 6 cut(s) 97, 196, 205, 590, 1000, 1117
BseLI CCNNNNNNNGG 4 cut(s) 150, 171, 1209, 1339
BseMII CTCAG 4 cut(s) 333, 387, 639, 1220
BseNI ACTGG 3 cut(s) 44, 717, 1299
BseRI GAGGAG 1 cut(s) 805
BseXI GCAGC 3 cut(s) 923, 1056, 1330
BshFI GGCC 3 cut(s) 143, 164, 1106
BshNI GGYRCC 2 cut(s) 1263, 1361
BshVI ATCGAT 1 cut(s) 627
BslI CCNNNNNNNGG 4 cut(s) 150, 171, 1209, 1339
BsmAI GTCTC 3 cut(s) 303, 417, 1144
BsmI GAATGC 2 cut(s) 905, 1025
BsnI GGCC 3 cut(s) 143, 164, 1106
Bso31I GGTCTC 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 695
Bsp143I GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
BspACI CCGC 2 cut(s) 175, 865
BspANI GGCC 3 cut(s) 143, 164, 1106
BspCNI CTCAG 4 cut(s) 334, 388, 640, 1221
BspDI ATCGAT 1 cut(s) 627
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 4 cut(s) 635, 1033, 1265, 1363
BspPI GGATC 2 cut(s) 767, 1117
BspT104I TTCGAA 1 cut(s) 695
BspT107I GGYRCC 2 cut(s) 1263, 1361
BspTI CTTAAG 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 303
BsrI ACTGG 3 cut(s) 44, 717, 1299
BssECI CCNNGG 6 cut(s) 144, 165, 480, 816, 990, 1107
BssMI GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
BssNAI GTATAC 1 cut(s) 1189
BssNI GRCGYC 1 cut(s) 1264
BssT1I CCWWGG 3 cut(s) 144, 165, 990
Bst1107I GTATAC 1 cut(s) 1189
Bst2UI CCWGG 2 cut(s) 481, 1109
Bst4CI ACNGT 3 cut(s) 361, 1166, 1283
Bst6I CTCTTC 4 cut(s) 189, 540, 697, 822
BstACI GRCGYC 1 cut(s) 1264
BstAFI CTTAAG 1 cut(s) 1006
BstBAI YACGTR 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 695
BstC8I GCNNGC 6 cut(s) 458, 869, 905, 909, 979, 1049
BstDEI CTNAG 6 cut(s) 63, 342, 396, 648, 1229, 1326
BstF5I GGATG 6 cut(s) 97, 196, 205, 590, 1000, 1117
BstH2I RGCGCY 1 cut(s) 1267
BstHHI GCGC 1 cut(s) 1266
BstKTI GATC 6 cut(s) 97, 610, 762, 1125, 1296, 1316
BstMAI GTCTC 3 cut(s) 303, 417, 1144
BstMBI GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 481, 1109
BstNSI RCATGY 2 cut(s) 567, 620
BstSCI CCNGG 2 cut(s) 479, 1107
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 3 cut(s) 923, 1056, 1330
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 2 cut(s) 1122, 1313
BstYI RGATCY 2 cut(s) 1122, 1313
BstZ17I GTATAC 1 cut(s) 1189
Bsu15I ATCGAT 1 cut(s) 627
BsuRI GGCC 3 cut(s) 143, 164, 1106
BsuTUI ATCGAT 1 cut(s) 627
BtsCI GGATG 6 cut(s) 97, 196, 205, 590, 1000, 1117
Cac8I GCNNGC 6 cut(s) 458, 869, 905, 909, 979, 1049
CciI TCATGA 1 cut(s) 375
CfoI GCGC 1 cut(s) 1266
Cfr13I GGNCC 4 cut(s) 513, 734, 1105, 1330
ClaI ATCGAT 1 cut(s) 627
Csp6I GTAC 3 cut(s) 411, 1270, 1302
CviAII CATG 7 cut(s) 376, 488, 508, 564, 617, 896, 1085
CviQI GTAC 3 cut(s) 411, 1270, 1302
DdeI CTNAG 6 cut(s) 63, 342, 396, 648, 1229, 1326
DinI GGCGCC 1 cut(s) 1265
DpnI GATC 6 cut(s) 96, 609, 761, 1124, 1295, 1315
DpnII GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 4 cut(s) 189, 540, 697, 822
EarI CTCTTC 4 cut(s) 189, 540, 697, 822
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 144, 165, 990
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 3 cut(s) 513, 734, 1330
EcoRII CCWGG 2 cut(s) 479, 1107
EcoT14I CCWWGG 3 cut(s) 144, 165, 990
EcoT22I ATGCAT 1 cut(s) 1025
EgeI GGCGCC 1 cut(s) 1265
EheI GGCGCC 1 cut(s) 1265
ErhI CCWWGG 3 cut(s) 144, 165, 990
FaeI CATG 7 cut(s) 379, 491, 511, 567, 620, 899, 1088
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 459, 491
FatI CATG 7 cut(s) 375, 487, 507, 563, 616, 895, 1084
FblI GTMKAC 1 cut(s) 1188
Fnu4HI GCNGC 3 cut(s) 912, 1045, 1344
FokI GGATG 6 cut(s) 104, 203, 212, 577, 1007, 1124
Fsp4HI GCNGC 3 cut(s) 912, 1045, 1344
FspBI CTAG 5 cut(s) 150, 434, 639, 948, 1136
GlaI GCGC 1 cut(s) 1265
GluI GCNGC 3 cut(s) 912, 1045, 1344
HaeII RGCGCY 1 cut(s) 1267
HaeIII GGCC 3 cut(s) 143, 164, 1106
HhaI GCGC 1 cut(s) 1266
Hin1I GRCGYC 1 cut(s) 1264
Hin1II CATG 7 cut(s) 379, 491, 511, 567, 620, 899, 1088
Hin6I GCGC 1 cut(s) 1264
HinP1I GCGC 1 cut(s) 1264
HincII GTYRAC 1 cut(s) 1200
HindII GTYRAC 1 cut(s) 1200
HinfI GANTC 4 cut(s) 185, 713, 944, 984
HphI GGTGA 1 cut(s) 1360
Hpy166II GTNNAC 5 cut(s) 128, 513, 1000, 1189, 1200
Hpy188I TCNGA 5 cut(s) 190, 308, 397, 649, 820
Hpy188III TCNNGA 6 cut(s) 23, 31, 341, 376, 665, 1029
Hpy8I GTNNAC 5 cut(s) 128, 513, 1000, 1189, 1200
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 29, 116, 431, 1091
HpyCH4III ACNGT 3 cut(s) 361, 1166, 1283
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 6 cut(s) 63, 342, 396, 648, 1229, 1326
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 1264
Hsp92II CATG 7 cut(s) 379, 491, 511, 567, 620, 899, 1088
HspAI GCGC 1 cut(s) 1264
KasI GGCGCC 1 cut(s) 1263
Kzo9I GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
LmnI GCTCC 2 cut(s) 792, 1031
Lsp1109I GCAGC 3 cut(s) 923, 1056, 1330
MaeI CTAG 5 cut(s) 150, 434, 639, 948, 1136
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 566, 920
MalI GATC 6 cut(s) 96, 609, 761, 1124, 1295, 1315
MboI GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
MboII GAAGA 9 cut(s) 85, 131, 206, 557, 684, 839, 970, 1165, 1247
MflI RGATCY 2 cut(s) 1122, 1313
MluCI AATT 8 cut(s) 391, 520, 656, 846, 1011, 1036, 1129, 1207
Mly113I GGCGCC 1 cut(s) 1264
Mph1103I ATGCAT 1 cut(s) 1025
MroXI GAANNNNTTC 1 cut(s) 1282
MseI TTAA 4 cut(s) 519, 621, 653, 1007
MslI CAYNNNNRTG 1 cut(s) 562
MspCI CTTAAG 1 cut(s) 1006
MspR9I CCNGG 2 cut(s) 481, 1109
Mva1269I GAATGC 2 cut(s) 905, 1025
MvaI CCWGG 2 cut(s) 481, 1109
MwoI GCNNNNNNNGC 1 cut(s) 155
NarI GGCGCC 1 cut(s) 1264
NdeII GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
NlaIII CATG 7 cut(s) 379, 491, 511, 567, 620, 899, 1088
NlaIV GGNNCC 4 cut(s) 635, 1033, 1265, 1363
NmuCI GTSAC 1 cut(s) 566
NsiI ATGCAT 1 cut(s) 1025
NspI RCATGY 2 cut(s) 567, 620
NspV TTCGAA 1 cut(s) 695
PagI TCATGA 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 2 cut(s) 905, 1025
PdmI GAANNNNTTC 1 cut(s) 1282
PfeI GAWTC 4 cut(s) 185, 713, 944, 984
PkrI GCNGC 3 cut(s) 913, 1046, 1345
PluTI GGCGCC 1 cut(s) 1267
Ppu21I YACGTR 1 cut(s) 240
PsiI TTATAA 2 cut(s) 845, 1101
Psp6I CCWGG 2 cut(s) 479, 1107
PspGI CCWGG 2 cut(s) 479, 1107
PspN4I GGNNCC 4 cut(s) 635, 1033, 1265, 1363
PspPI GGNCC 4 cut(s) 513, 734, 1105, 1330
PsuI RGATCY 2 cut(s) 1122, 1313
RsaI GTAC 3 cut(s) 412, 1271, 1303
RsaNI GTAC 3 cut(s) 411, 1270, 1302
RseI CAYNNNNRTG 1 cut(s) 562
SaqAI TTAA 4 cut(s) 519, 621, 653, 1007
SatI GCNGC 3 cut(s) 912, 1045, 1344
Sau3AI GATC 6 cut(s) 94, 607, 759, 1122, 1293, 1313
Sau96I GGNCC 4 cut(s) 513, 734, 1105, 1330
ScrFI CCNGG 2 cut(s) 481, 1109
SfcI CTRYAG 1 cut(s) 501
SfoI GGCGCC 1 cut(s) 1265
SfuI TTCGAA 1 cut(s) 695
SinI GGWCC 3 cut(s) 513, 734, 1330
SmiMI CAYNNNNRTG 1 cut(s) 562
SmlI CTYRAG 1 cut(s) 1006
SmoI CTYRAG 1 cut(s) 1006
Sse9I AATT 8 cut(s) 391, 520, 656, 846, 1011, 1036, 1129, 1207
SsiI CCGC 2 cut(s) 175, 865
SspDI GGCGCC 1 cut(s) 1263
SspI AATATT 1 cut(s) 748
SspMI CTAG 5 cut(s) 150, 434, 639, 948, 1136
StyD4I CCNGG 2 cut(s) 479, 1107
StyI CCWWGG 3 cut(s) 144, 165, 990
TaaI ACNGT 3 cut(s) 361, 1166, 1283
TaiI ACGT 1 cut(s) 242
TaqI TCGA 5 cut(s) 12, 24, 30, 627, 695
TaqII GACCGA 1 cut(s) 1217
TasI AATT 8 cut(s) 391, 520, 656, 846, 1011, 1036, 1129, 1207
TatI WGTACW 2 cut(s) 1269, 1301
TfiI GAWTC 4 cut(s) 185, 713, 944, 984
Tru1I TTAA 4 cut(s) 519, 621, 653, 1007
Tru9I TTAA 4 cut(s) 519, 621, 653, 1007
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 3 cut(s) 911, 1044, 1343
Tsp45I GTSAC 1 cut(s) 566
TspGWI ACGGA 3 cut(s) 428, 435, 1322
Vha464I CTTAAG 1 cut(s) 1006
VpaK11BI GGWCC 3 cut(s) 513, 734, 1330
XapI RAATTY 1 cut(s) 1129
XceI RCATGY 2 cut(s) 567, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 1188
XmnI GAANNNNTTC 1 cut(s) 1282
XspI CTAG 5 cut(s) 150, 434, 639, 948, 1136
Zsp2I ATGCAT 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.