Rh5CG408400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006346
Physical Location & Seq
Reverse (-)
54835528 .. 54846384
10857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG408400.1

Sequence Viewer

Length: 885 bp
ATGGGATTTGGCAGTGTAGGGAATGGAGTGGAAGTGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATCCTCTCATCCAAAAATGAGGTTGATCTACTGCATGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCGAATATGGAATATGTTGATTCCAGTTCTGGTCATCAAGGTCCAGCTCAAAATATTAGAGCGTGGATCAAATATGCAACTACTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGTTGATGGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTTTGCATGAATGCTTGCAGGCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCCAAGGATGTGAACTGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCAGCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATGGTTGTTTTGATTATAAGGCCCAGGATGAAGTAGAGATCCTAAATTTGCTAGTCTCAATCAATGTGAAAGACAAAAACTGTGATTTCTTCAAGGTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAATCAACTGAGTGAAGACAAGCAAGTATTGAATGAAATGTGGCGCCTGTACTTACGAAACTGTTCTTGCCTGATCGCCAGTACAGATTTGAGATCTTTTGCCTCTAAGGTCCGTAATAAGGCTGCATATCTCCTGCAAGGCACCATCACCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAM178

Protein Analysis

294

Amino Acids

33.55

Weight (kDa)

5.52

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 353, 609
AccB1I GGYRCC 2 cut(s) 771, 869
AccI GTMKAC 1 cut(s) 696
AciI CCGC 1 cut(s) 373
AclWI GGATC 2 cut(s) 275, 625
AcsI RAATTY 1 cut(s) 637
AcyI GRCGYC 1 cut(s) 772
AfaI GTAC 2 cut(s) 779, 811
AfiI CCNNNNNNNGG 2 cut(s) 717, 847
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 5 cut(s) 176, 196, 383, 685, 760
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 7 cut(s) 150, 248, 311, 379, 422, 459, 559
AluI AGCT 7 cut(s) 150, 248, 311, 379, 422, 459, 559
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 2 cut(s) 275, 625
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 419, 552, 851
ApoI RAATTY 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 790
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 3 cut(s) 242, 613, 838
AsuHPI GGTGA 1 cut(s) 868
AsuII TTCGAA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 242, 838
BanI GGYRCC 2 cut(s) 771, 869
BbsI GAAGAC 1 cut(s) 750
BbvI GCAGC 3 cut(s) 431, 564, 838
BccI CCATC 2 cut(s) 337, 881
BciT130I CCWGG 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 3 cut(s) 147, 456, 644
BfoI RGCGCY 1 cut(s) 775
BfrI CTTAAG 1 cut(s) 514
BglII AGATCT 1 cut(s) 821
BisI GCNGC 3 cut(s) 420, 553, 852
BlsI GCNGC 3 cut(s) 421, 554, 853
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 2 cut(s) 242, 838
BmgT120I GGNCC 3 cut(s) 242, 613, 838
BmiI GGNNCC 4 cut(s) 143, 541, 773, 871
BmrFI CCNGG 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 750
Bpu14I TTCGAA 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 772
BsaJI CCNNGG 3 cut(s) 324, 498, 615
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 847
Bse1I ACTGG 2 cut(s) 225, 807
BseBI CCWGG 1 cut(s) 617
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 3 cut(s) 324, 498, 615
BseGI GGATG 3 cut(s) 98, 508, 625
BseLI CCNNNNNNNGG 2 cut(s) 717, 847
BseMII CTCAG 2 cut(s) 147, 728
BseNI ACTGG 2 cut(s) 225, 807
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 3 cut(s) 431, 564, 838
BshFI GGCC 1 cut(s) 614
BshNI GGYRCC 2 cut(s) 771, 869
BshVI ATCGAT 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 717, 847
BsmAI GTCTC 1 cut(s) 652
BsmI GAATGC 2 cut(s) 413, 533
BsnI GGCC 1 cut(s) 614
Bsp119I TTCGAA 1 cut(s) 203
Bsp143I GATC 5 cut(s) 115, 267, 630, 801, 821
BspACI CCGC 1 cut(s) 373
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 148, 729
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 143, 541, 773, 871
BspPI GGATC 2 cut(s) 275, 625
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 2 cut(s) 771, 869
BspTI CTTAAG 1 cut(s) 514
BsrI ACTGG 2 cut(s) 225, 807
BssECI CCNNGG 3 cut(s) 324, 498, 615
BssMI GATC 5 cut(s) 115, 267, 630, 801, 821
BssNAI GTATAC 1 cut(s) 697
BssNI GRCGYC 1 cut(s) 772
BssT1I CCWWGG 1 cut(s) 498
Bst1107I GTATAC 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 2 cut(s) 674, 791
Bst6I CTCTTC 3 cut(s) 48, 205, 330
BstACI GRCGYC 1 cut(s) 772
BstAFI CTTAAG 1 cut(s) 514
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 5 cut(s) 377, 413, 417, 487, 557
BstDEI CTNAG 3 cut(s) 156, 737, 834
BstF5I GGATG 3 cut(s) 98, 508, 625
BstH2I RGCGCY 1 cut(s) 775
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 5 cut(s) 118, 270, 633, 804, 824
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 5 cut(s) 115, 267, 630, 801, 821
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 2 cut(s) 75, 128
BstSCI CCNGG 1 cut(s) 615
BstV1I GCAGC 3 cut(s) 431, 564, 838
BstV2I GAAGAC 1 cut(s) 750
BstX2I RGATCY 2 cut(s) 630, 821
BstYI RGATCY 2 cut(s) 630, 821
BstZ17I GTATAC 1 cut(s) 697
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 1 cut(s) 614
BsuTUI ATCGAT 1 cut(s) 135
BtsCI GGATG 3 cut(s) 98, 508, 625
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 5 cut(s) 377, 413, 417, 487, 557
CfoI GCGC 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 242, 613, 838
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 2 cut(s) 778, 810
CviAII CATG 4 cut(s) 72, 125, 404, 593
CviQI GTAC 2 cut(s) 778, 810
DdeI CTNAG 3 cut(s) 156, 737, 834
DinI GGCGCC 1 cut(s) 773
DpnI GATC 5 cut(s) 117, 269, 632, 803, 823
DpnII GATC 5 cut(s) 115, 267, 630, 801, 821
Eam1104I CTCTTC 3 cut(s) 48, 205, 330
EarI CTCTTC 3 cut(s) 48, 205, 330
Eco130I CCWWGG 1 cut(s) 498
Eco47I GGWCC 2 cut(s) 242, 838
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 533
EgeI GGCGCC 1 cut(s) 773
EheI GGCGCC 1 cut(s) 773
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 75, 128, 407, 596
FatI CATG 4 cut(s) 71, 124, 403, 592
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 420, 553, 852
FokI GGATG 3 cut(s) 85, 515, 632
Fsp4HI GCNGC 3 cut(s) 420, 553, 852
FspBI CTAG 3 cut(s) 147, 456, 644
GlaI GCGC 1 cut(s) 773
GluI GCNGC 3 cut(s) 420, 553, 852
HaeII RGCGCY 1 cut(s) 775
HaeIII GGCC 1 cut(s) 614
HhaI GCGC 1 cut(s) 774
Hin1I GRCGYC 1 cut(s) 772
Hin1II CATG 4 cut(s) 75, 128, 407, 596
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 3 cut(s) 221, 452, 492
HphI GGTGA 1 cut(s) 868
Hpy166II GTNNAC 3 cut(s) 508, 697, 708
Hpy188I TCNGA 2 cut(s) 157, 328
Hpy188III TCNNGA 2 cut(s) 173, 537
Hpy8I GTNNAC 3 cut(s) 508, 697, 708
HpyAV CCTTC 1 cut(s) 599
HpyCH4III ACNGT 2 cut(s) 674, 791
HpyCH4V TGCA 8 cut(s) 71, 124, 278, 403, 415, 531, 854, 865
HpyF3I CTNAG 3 cut(s) 156, 737, 834
Hsp92I GRCGYC 1 cut(s) 772
Hsp92II CATG 4 cut(s) 75, 128, 407, 596
HspAI GCGC 1 cut(s) 772
KasI GGCGCC 1 cut(s) 771
Kzo9I GATC 5 cut(s) 115, 267, 630, 801, 821
LmnI GCTCC 2 cut(s) 300, 539
Lsp1109I GCAGC 3 cut(s) 431, 564, 838
MaeI CTAG 3 cut(s) 147, 456, 644
MaeIII GTNAC 2 cut(s) 74, 428
MalI GATC 5 cut(s) 117, 269, 632, 803, 823
MboI GATC 5 cut(s) 115, 267, 630, 801, 821
MboII GAAGA 6 cut(s) 65, 192, 347, 478, 673, 755
MflI RGATCY 2 cut(s) 630, 821
MluCI AATT 6 cut(s) 164, 354, 519, 544, 637, 715
Mly113I GGCGCC 1 cut(s) 772
MnlI CCTC 6 cut(s) 54, 103, 104, 291, 334, 841
Mph1103I ATGCAT 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 790
MseI TTAA 3 cut(s) 129, 161, 515
MslI CAYNNNNRTG 1 cut(s) 70
MspCI CTTAAG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 617
Mva1269I GAATGC 2 cut(s) 413, 533
MvaI CCWGG 1 cut(s) 617
NarI GGCGCC 1 cut(s) 772
NdeII GATC 5 cut(s) 115, 267, 630, 801, 821
NlaIII CATG 4 cut(s) 75, 128, 407, 596
NlaIV GGNNCC 4 cut(s) 143, 541, 773, 871
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 2 cut(s) 75, 128
NspV TTCGAA 1 cut(s) 203
PctI GAATGC 2 cut(s) 413, 533
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 221, 452, 492
PkrI GCNGC 3 cut(s) 421, 554, 853
PluTI GGCGCC 1 cut(s) 775
PsiI TTATAA 2 cut(s) 353, 609
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 4 cut(s) 143, 541, 773, 871
PspPI GGNCC 3 cut(s) 242, 613, 838
PsuI RGATCY 2 cut(s) 630, 821
RsaI GTAC 2 cut(s) 779, 811
RsaNI GTAC 2 cut(s) 778, 810
RseI CAYNNNNRTG 1 cut(s) 70
SaqAI TTAA 3 cut(s) 129, 161, 515
SatI GCNGC 3 cut(s) 420, 553, 852
Sau3AI GATC 5 cut(s) 115, 267, 630, 801, 821
Sau96I GGNCC 3 cut(s) 242, 613, 838
ScrFI CCNGG 1 cut(s) 617
SfoI GGCGCC 1 cut(s) 773
SfuI TTCGAA 1 cut(s) 203
SinI GGWCC 2 cut(s) 242, 838
SmiMI CAYNNNNRTG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
Sse9I AATT 6 cut(s) 164, 354, 519, 544, 637, 715
SsiI CCGC 1 cut(s) 373
SspDI GGCGCC 1 cut(s) 771
SspI AATATT 1 cut(s) 256
SspMI CTAG 3 cut(s) 147, 456, 644
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 674, 791
TaqI TCGA 2 cut(s) 135, 203
TaqII GACCGA 1 cut(s) 725
TasI AATT 6 cut(s) 164, 354, 519, 544, 637, 715
TatI WGTACW 2 cut(s) 777, 809
TfiI GAWTC 3 cut(s) 221, 452, 492
Tru1I TTAA 3 cut(s) 129, 161, 515
Tru9I TTAA 3 cut(s) 129, 161, 515
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 3 cut(s) 419, 552, 851
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 7 cut(s) 33, 66, 420, 459, 581, 636, 777
TspGWI ACGGA 1 cut(s) 830
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 242, 838
XapI RAATTY 1 cut(s) 637
XceI RCATGY 2 cut(s) 75, 128
XmiI GTMKAC 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 790
XspI CTAG 3 cut(s) 147, 456, 644
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.