Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Reverse (-)

63605747 .. 63611741

Gene Structure 5995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG374100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGATGGACTTCGATAGCCTTCTCGACTTCGAGAGCGACGAGCCAGTCCTCAACCCCCCTCCTAAGAAAAGGAAGAAAGTTATTGGGCTGGATGATCTTTTGACTGATTTCTACAAGGAAGAAGGTAAACTTGTTGAAAAGGCCAAGGCTAGGAAAGCAAAGGCCAAGGCACGGCGGAACAATGATTCAGATGAAGAGGATGATGAACACAGAGAGGCTTCCCTCTCTCAACTTGTTGATACGTGCGAAAACCAGATAATAGAAATAGGTGGCAAGGAGGATAGCTTTTTGTGGGGGATATGCGTTTTCGGAGACCAGAGAACCCCACCTCCCCTTGCTTTTCCTGAGCTCAAAAGTTGCACAGTCTTGCAGTCTTTCATGAAAGACAAGCTCAATTCTGAGTTTGAAATCTGTACGGACATCGGAGACACTTTGCTACAAGGGTTATTAGTAAATGGCTGGCTTTCAAAAGTGGTTCTTGCCAGGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATCCTCTCATCCAAAAATGAGGTTGATCTACAGCATGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCGAATATGGAATATGTTGATTCCAGTTCTGGTCATCAAGGTCCAGCTCAAAATATTAGAGCGTGGATCAAATATGCAACTACTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGTTGATGGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTTTGCACGAATGCTTGCAGTCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCCAAGGATGTGAACTGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCAGCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATAGTTGTTTTGATTATAAGGCCCAGGATGAAGTAGAGATCCTAAATTTGCTAGTCTCAATCAATGTGAAAGACAAAAACTGTGATTTCTTCAAGGTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAAGCAACTGAGTGAAGACAAGCAAGTATTGAATGAAATGTGGCGCCTGTACTTACGAAACTGTTCTTATCTGATCGCCAGTACAGATTTGAGATCTTTTGCCTCTAAGGTCCGTAATAAGGCTGCATATCTCCTGCAAGGCACCATCACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

459

Amino Acids

52.59

Weight (kDa)

5.23

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	848, 1104
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	1266, 1364
AccI	GTMKAC	1 cut(s)	1191
AciI	CCGC	2 cut(s)	175, 868
AclWI	GGATC	2 cut(s)	770, 1120
AcsI	RAATTY	1 cut(s)	1132
AcyI	GRCGYC	1 cut(s)	1267
AfaI	GTAC	3 cut(s)	415, 1274, 1306
AfiI	CCNNNNNNNGG	4 cut(s)	150, 171, 1212, 1342
AflII	CTTAAG	1 cut(s)	1009
AgsI	TTSAA	8 cut(s)	137, 407, 468, 671, 691, 878, 1180, 1255
AjnI	CCWGG	2 cut(s)	482, 1110
AloI	GAACNNNNNNTCC	2 cut(s)	313, 345
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	3 cut(s)	306, 420, 1147
AlwI	GGATC	2 cut(s)	770, 1120
AoxI	GGCC	3 cut(s)	141, 162, 1107
ApeKI	GCWGC	2 cut(s)	1047, 1346
ApoI	RAATTY	1 cut(s)	1132
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
Asp700I	GAANNNNTTC	1 cut(s)	1285
AspLEI	GCGC	1 cut(s)	1269
AspS9I	GGNCC	4 cut(s)	516, 737, 1108, 1333
AsuHPI	GGTGA	1 cut(s)	1363
AsuII	TTCGAA	1 cut(s)	698
AvaII	GGWCC	3 cut(s)	516, 737, 1333
BanI	GGYRCC	2 cut(s)	1266, 1364
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	1245
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	1059, 1333
BccI	CCATC	3 cut(s)	523, 832, 1376
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	484, 1112
BcoDI	GTCTC	3 cut(s)	306, 420, 1147
BfaI	CTAG	4 cut(s)	150, 642, 951, 1139
BfmI	CTRYAG	2 cut(s)	504, 614
BfoI	RGCGCY	1 cut(s)	1270
BfrI	CTTAAG	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	1316
BisI	GCNGC	2 cut(s)	1048, 1347
BlsI	GCNGC	2 cut(s)	1049, 1348
Bme1390I	CCNGG	2 cut(s)	484, 1112
Bme18I	GGWCC	3 cut(s)	516, 737, 1333
BmgT120I	GGNCC	4 cut(s)	516, 737, 1108, 1333
BmiI	GGNNCC	4 cut(s)	638, 1036, 1268, 1366
BmrFI	CCNGG	2 cut(s)	484, 1112
BpiI	GAAGAC	1 cut(s)	1245
Bpu10I	CCTNAGC	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	698
Bsa29I	ATCGAT	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	1267
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	6 cut(s)	144, 165, 483, 819, 993, 1110
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 171, 1212, 1342
Bse1I	ACTGG	3 cut(s)	44, 720, 1302
BseBI	CCWGG	2 cut(s)	484, 1112
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	6 cut(s)	144, 165, 483, 819, 993, 1110
BseGI	GGATG	5 cut(s)	97, 205, 593, 1003, 1120
BseLI	CCNNNNNNNGG	4 cut(s)	150, 171, 1212, 1342
BseMII	CTCAG	4 cut(s)	336, 390, 642, 1223
BseNI	ACTGG	3 cut(s)	44, 720, 1302
BseRI	GAGGAG	1 cut(s)	808
BseXI	GCAGC	2 cut(s)	1059, 1333
BshFI	GGCC	3 cut(s)	143, 164, 1109
BshNI	GGYRCC	2 cut(s)	1266, 1364
BshVI	ATCGAT	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	150, 171, 1212, 1342
BsmAI	GTCTC	3 cut(s)	306, 420, 1147
BsmI	GAATGC	2 cut(s)	908, 1028
BsnI	GGCC	3 cut(s)	143, 164, 1109
Bso31I	GGTCTC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
BspACI	CCGC	2 cut(s)	175, 868
BspANI	GGCC	3 cut(s)	143, 164, 1109
BspCNI	CTCAG	4 cut(s)	337, 391, 643, 1224
BspDI	ATCGAT	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	638, 1036, 1268, 1366
BspPI	GGATC	2 cut(s)	770, 1120
BspT104I	TTCGAA	1 cut(s)	698
BspT107I	GGYRCC	2 cut(s)	1266, 1364
BspTI	CTTAAG	1 cut(s)	1009
BspTNI	GGTCTC	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	44, 720, 1302
BssECI	CCNNGG	6 cut(s)	144, 165, 483, 819, 993, 1110
BssMI	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
BssNAI	GTATAC	1 cut(s)	1192
BssNI	GRCGYC	1 cut(s)	1267
BssT1I	CCWWGG	3 cut(s)	144, 165, 993
Bst1107I	GTATAC	1 cut(s)	1192
Bst2UI	CCWGG	2 cut(s)	484, 1112
Bst4CI	ACNGT	3 cut(s)	364, 1169, 1286
Bst6I	CTCTTC	4 cut(s)	189, 543, 700, 825
BstACI	GRCGYC	1 cut(s)	1267
BstAFI	CTTAAG	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	5 cut(s)	461, 872, 908, 982, 1052
BstDEI	CTNAG	7 cut(s)	63, 345, 399, 651, 1224, 1232, 1329
BstF5I	GGATG	5 cut(s)	97, 205, 593, 1003, 1120
BstH2I	RGCGCY	1 cut(s)	1270
BstHHI	GCGC	1 cut(s)	1269
BstKTI	GATC	6 cut(s)	97, 613, 765, 1128, 1299, 1319
BstMAI	GTCTC	3 cut(s)	306, 420, 1147
BstMBI	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	484, 1112
BstNSI	RCATGY	2 cut(s)	570, 623
BstSCI	CCNGG	2 cut(s)	482, 1110
BstSFI	CTRYAG	2 cut(s)	504, 614
BstV1I	GCAGC	2 cut(s)	1059, 1333
BstV2I	GAAGAC	1 cut(s)	1245
BstX2I	RGATCY	2 cut(s)	1125, 1316
BstYI	RGATCY	2 cut(s)	1125, 1316
BstZ17I	GTATAC	1 cut(s)	1192
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	143, 164, 1109
BsuTUI	ATCGAT	1 cut(s)	630
BtsCI	GGATG	5 cut(s)	97, 205, 593, 1003, 1120
Cac8I	GCNNGC	5 cut(s)	461, 872, 908, 982, 1052
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	1269
Cfr13I	GGNCC	4 cut(s)	516, 737, 1108, 1333
ClaI	ATCGAT	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	414, 1273, 1305
CviAII	CATG	5 cut(s)	379, 491, 511, 567, 620
CviQI	GTAC	3 cut(s)	414, 1273, 1305
DdeI	CTNAG	7 cut(s)	63, 345, 399, 651, 1224, 1232, 1329
DinI	GGCGCC	1 cut(s)	1268
DpnI	GATC	6 cut(s)	96, 612, 764, 1127, 1298, 1318
DpnII	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	4 cut(s)	189, 543, 700, 825
EarI	CTCTTC	4 cut(s)	189, 543, 700, 825
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	3 cut(s)	144, 165, 993
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	516, 737, 1333
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	2 cut(s)	482, 1110
EcoT14I	CCWWGG	3 cut(s)	144, 165, 993
EcoT22I	ATGCAT	1 cut(s)	1028
EcoT38I	GRGCYC	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	1268
EheI	GGCGCC	1 cut(s)	1268
ErhI	CCWWGG	3 cut(s)	144, 165, 993
FaeI	CATG	5 cut(s)	382, 494, 514, 570, 623
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 462, 494
FatI	CATG	5 cut(s)	378, 490, 510, 566, 619
FblI	GTMKAC	1 cut(s)	1191
Fnu4HI	GCNGC	2 cut(s)	1048, 1347
FokI	GGATG	5 cut(s)	104, 212, 580, 1010, 1127
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	1048, 1347
FspBI	CTAG	4 cut(s)	150, 642, 951, 1139
GlaI	GCGC	1 cut(s)	1268
GluI	GCNGC	2 cut(s)	1048, 1347
HaeII	RGCGCY	1 cut(s)	1270
HaeIII	GGCC	3 cut(s)	143, 164, 1109
HhaI	GCGC	1 cut(s)	1269
Hin1I	GRCGYC	1 cut(s)	1267
Hin1II	CATG	5 cut(s)	382, 494, 514, 570, 623
Hin6I	GCGC	1 cut(s)	1267
HinP1I	GCGC	1 cut(s)	1267
HincII	GTYRAC	1 cut(s)	1203
HindII	GTYRAC	1 cut(s)	1203
HinfI	GANTC	4 cut(s)	185, 716, 947, 987
HphI	GGTGA	1 cut(s)	1363
Hpy166II	GTNNAC	5 cut(s)	128, 516, 1003, 1192, 1203
Hpy188I	TCNGA	7 cut(s)	190, 311, 400, 425, 652, 823, 1296
Hpy188III	TCNNGA	6 cut(s)	23, 31, 344, 379, 668, 1032
Hpy8I	GTNNAC	5 cut(s)	128, 516, 1003, 1192, 1203
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	29, 116, 1094
HpyCH4III	ACNGT	3 cut(s)	364, 1169, 1286
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	9 cut(s)	360, 370, 566, 773, 898, 910, 1026, 1349, 1360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	7 cut(s)	63, 345, 399, 651, 1224, 1232, 1329
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	1267
Hsp92II	CATG	5 cut(s)	382, 494, 514, 570, 623
HspAI	GCGC	1 cut(s)	1267
KasI	GGCGCC	1 cut(s)	1266
Kzo9I	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
LmnI	GCTCC	2 cut(s)	795, 1034
Lsp1109I	GCAGC	2 cut(s)	1059, 1333
MaeI	CTAG	4 cut(s)	150, 642, 951, 1139
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	569, 923
MalI	GATC	6 cut(s)	96, 612, 764, 1127, 1298, 1318
MboI	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
MboII	GAAGA	9 cut(s)	85, 131, 206, 560, 687, 842, 973, 1168, 1250
MflI	RGATCY	2 cut(s)	1125, 1316
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	8 cut(s)	394, 523, 659, 849, 1014, 1039, 1132, 1210
Mly113I	GGCGCC	1 cut(s)	1267
Mph1103I	ATGCAT	1 cut(s)	1028
MroXI	GAANNNNTTC	1 cut(s)	1285
MseI	TTAA	4 cut(s)	522, 624, 656, 1010
MslI	CAYNNNNRTG	1 cut(s)	565
MspCI	CTTAAG	1 cut(s)	1009
MspR9I	CCNGG	2 cut(s)	484, 1112
Mva1269I	GAATGC	2 cut(s)	908, 1028
MvaI	CCWGG	2 cut(s)	484, 1112
MwoI	GCNNNNNNNGC	1 cut(s)	155
NarI	GGCGCC	1 cut(s)	1267
NdeII	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
NlaIII	CATG	5 cut(s)	382, 494, 514, 570, 623
NlaIV	GGNNCC	4 cut(s)	638, 1036, 1268, 1366
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	1028
NspI	RCATGY	2 cut(s)	570, 623
NspV	TTCGAA	1 cut(s)	698
PagI	TCATGA	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	908, 1028
PdmI	GAANNNNTTC	1 cut(s)	1285
PfeI	GAWTC	4 cut(s)	185, 716, 947, 987
PkrI	GCNGC	2 cut(s)	1049, 1348
PluTI	GGCGCC	1 cut(s)	1270
Ppu21I	YACGTR	1 cut(s)	243
PsiI	TTATAA	2 cut(s)	848, 1104
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	482, 1110
PspGI	CCWGG	2 cut(s)	482, 1110
PspN4I	GGNNCC	4 cut(s)	638, 1036, 1268, 1366
PspPI	GGNCC	4 cut(s)	516, 737, 1108, 1333
PsuI	RGATCY	2 cut(s)	1125, 1316
RsaI	GTAC	3 cut(s)	415, 1274, 1306
RsaNI	GTAC	3 cut(s)	414, 1273, 1305
RseI	CAYNNNNRTG	1 cut(s)	565
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	522, 624, 656, 1010
SatI	GCNGC	2 cut(s)	1048, 1347
Sau3AI	GATC	6 cut(s)	94, 610, 762, 1125, 1296, 1316
Sau96I	GGNCC	4 cut(s)	516, 737, 1108, 1333
ScrFI	CCNGG	2 cut(s)	484, 1112
SduI	GDGCHC	1 cut(s)	351
SfcI	CTRYAG	2 cut(s)	504, 614
SfoI	GGCGCC	1 cut(s)	1268
SfuI	TTCGAA	1 cut(s)	698
SinI	GGWCC	3 cut(s)	516, 737, 1333
SmiMI	CAYNNNNRTG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
Sse9I	AATT	8 cut(s)	394, 523, 659, 849, 1014, 1039, 1132, 1210
SsiI	CCGC	2 cut(s)	175, 868
SspDI	GGCGCC	1 cut(s)	1266
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	4 cut(s)	150, 642, 951, 1139
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	482, 1110
StyI	CCWWGG	3 cut(s)	144, 165, 993
TaaI	ACNGT	3 cut(s)	364, 1169, 1286
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	5 cut(s)	12, 24, 30, 630, 698
TaqII	GACCGA	1 cut(s)	1220
TasI	AATT	8 cut(s)	394, 523, 659, 849, 1014, 1039, 1132, 1210
TatI	WGTACW	2 cut(s)	1272, 1304
TfiI	GAWTC	4 cut(s)	185, 716, 947, 987
Tru1I	TTAA	4 cut(s)	522, 624, 656, 1010
Tru9I	TTAA	4 cut(s)	522, 624, 656, 1010
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	2 cut(s)	1047, 1346
Tsp45I	GTSAC	1 cut(s)	569
TspGWI	ACGGA	2 cut(s)	431, 1325
Vha464I	CTTAAG	1 cut(s)	1009
VpaK11BI	GGWCC	3 cut(s)	516, 737, 1333
XapI	RAATTY	1 cut(s)	1132
XceI	RCATGY	2 cut(s)	570, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	1191
XmnI	GAANNNNTTC	1 cut(s)	1285
XspI	CTAG	4 cut(s)	150, 642, 951, 1139
Zsp2I	ATGCAT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.