Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Reverse (-)

62815928 .. 62821996

Gene Structure 6069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG398500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATGGACTTCGATAGCCTTCTCGACTTCGAGAGCGACGAGCCAGTCCTCAACCCCCCTCCTAGGAAAAGGAAGAAAGTTATTGGGCTGGATGATCTTTTGACTGATTTCTACAAGGAAGAAGGTAAACTTGTTGAAAAGGCCAAGGCTAGGAAAGCAAAGGCCAAGGCACGGCGGAACAATGATTCAGATGAAGAGGATGAACACAGAGAGGCTTCCCTCTCTCAACTTGTTGATACGTGCGAAAACCAGATAATAGAAATAGGTGGCAAGGAGGATAGCTTTTTGTGGGGGATATGCGTTTTCGGAGATCAGAGAACCCCACCTCCCCTTGCTTTTCCTGAGCTCAAAAGTTGCACAGTCTTGCAGTCTTTCATGAAAGACGAGCTCAATTCTGAGTTTGAAATCTGTACGGACAACGGAAACACTTTGCTAGAAGGGTTATTAGTAAATGGCTGGCTTTCAAAAGTGGTTCTTGCCAGGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATCCTCTCATCCAAAAATGAGGTTGATCTACAGCATGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCGAATATGGAATATGTTGATTCCAGTTCTGGTCATCAAGGTCCAGCTCAAAATATTAGAGCGTGGATCAAATATGCAACTACTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGTTGATGGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGAGCTTTTGCACGAATGCTTGCAGTCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCCAAGGATGTGAACAGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCAGCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATAGTTGTTTTGATTATAAGGTAGTGAACCTGACTACAATATTGTTGAATAATATTAGGCAATATGCTTTTACTCCAAAGTTTACCAACTACTTGGTCCAACAAATCAAGTTGACCGCTAATAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

404

Amino Acids

46.19

Weight (kDa)

5.21

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	845, 1101
AasI	GACNNNNNNGTC	1 cut(s)	44
AciI	CCGC	3 cut(s)	175, 865, 1200
AclWI	GGATC	1 cut(s)	767
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	63, 150, 171
AflII	CTTAAG	1 cut(s)	1006
AgsI	TTSAA	7 cut(s)	137, 404, 465, 668, 688, 875, 1132
AjnI	CCWGG	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
Alw21I	GWGCWC	2 cut(s)	348, 390
AlwI	GGATC	1 cut(s)	767
AoxI	GGCC	2 cut(s)	141, 162
ApeKI	GCWGC	1 cut(s)	1044
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
AspA2I	CCTAGG	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	513, 734, 1180
AsuII	TTCGAA	1 cut(s)	695
AvaII	GGWCC	3 cut(s)	513, 734, 1180
AvrII	CCTAGG	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	348, 390
Bbv12I	GWGCWC	2 cut(s)	348, 390
BbvI	GCAGC	1 cut(s)	1056
BccI	CCATC	2 cut(s)	520, 829
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	481
BfaI	CTAG	5 cut(s)	63, 150, 434, 639, 948
BfmI	CTRYAG	2 cut(s)	501, 611
BfrI	CTTAAG	1 cut(s)	1006
BisI	GCNGC	1 cut(s)	1045
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	1046
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	3 cut(s)	513, 734, 1180
BmgT120I	GGNCC	3 cut(s)	513, 734, 1180
BmiI	GGNNCC	2 cut(s)	635, 1033
BmrFI	CCNGG	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	240
BsaJI	CCNNGG	6 cut(s)	62, 144, 165, 480, 816, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 150, 171
Bse1I	ACTGG	2 cut(s)	44, 717
BseBI	CCWGG	1 cut(s)	481
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	6 cut(s)	62, 144, 165, 480, 816, 990
BseGI	GGATG	4 cut(s)	97, 205, 590, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	63, 150, 171
BseMII	CTCAG	3 cut(s)	333, 387, 639
BseNI	ACTGG	2 cut(s)	44, 717
BseRI	GAGGAG	1 cut(s)	805
BseXI	GCAGC	1 cut(s)	1056
BshFI	GGCC	2 cut(s)	143, 164
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	348, 390
BslI	CCNNNNNNNGG	3 cut(s)	63, 150, 171
BsmI	GAATGC	2 cut(s)	905, 1025
BsnI	GGCC	2 cut(s)	143, 164
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	2 cut(s)	348, 390
Bsp143I	GATC	4 cut(s)	94, 310, 607, 759
BspACI	CCGC	3 cut(s)	175, 865, 1200
BspANI	GGCC	2 cut(s)	143, 164
BspCNI	CTCAG	3 cut(s)	334, 388, 640
BspDI	ATCGAT	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	635, 1033
BspPI	GGATC	1 cut(s)	767
BspT104I	TTCGAA	1 cut(s)	695
BspTI	CTTAAG	1 cut(s)	1006
BsrI	ACTGG	2 cut(s)	44, 717
BssECI	CCNNGG	6 cut(s)	62, 144, 165, 480, 816, 990
BssMI	GATC	4 cut(s)	94, 310, 607, 759
BssT1I	CCWWGG	4 cut(s)	62, 144, 165, 990
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	4 cut(s)	189, 540, 697, 822
BstAFI	CTTAAG	1 cut(s)	1006
BstBAI	YACGTR	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	5 cut(s)	458, 869, 905, 979, 1049
BstDEI	CTNAG	3 cut(s)	342, 396, 648
BstF5I	GGATG	4 cut(s)	97, 205, 590, 1000
BstKTI	GATC	4 cut(s)	97, 313, 610, 762
BstMBI	GATC	4 cut(s)	94, 310, 607, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	2 cut(s)	567, 620
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	501, 611
BstV1I	GCAGC	1 cut(s)	1056
BstXI	CCANNNNNNTGG	1 cut(s)	1177
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	143, 164
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	97, 205, 590, 1000
Cac8I	GCNNGC	5 cut(s)	458, 869, 905, 979, 1049
CciI	TCATGA	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	513, 734, 1180
ClaI	ATCGAT	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	5 cut(s)	376, 488, 508, 564, 617
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	342, 396, 648
DpnI	GATC	4 cut(s)	96, 312, 609, 761
DpnII	GATC	4 cut(s)	94, 310, 607, 759
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	4 cut(s)	189, 540, 697, 822
EarI	CTCTTC	4 cut(s)	189, 540, 697, 822
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	2 cut(s)	346, 388
Eco130I	CCWWGG	4 cut(s)	62, 144, 165, 990
Eco24I	GRGCYC	2 cut(s)	348, 390
Eco47I	GGWCC	3 cut(s)	513, 734, 1180
Eco53kI	GAGCTC	2 cut(s)	346, 388
EcoICRI	GAGCTC	2 cut(s)	346, 388
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	4 cut(s)	62, 144, 165, 990
EcoT22I	ATGCAT	1 cut(s)	1025
EcoT38I	GRGCYC	2 cut(s)	348, 390
ErhI	CCWWGG	4 cut(s)	62, 144, 165, 990
FaeI	CATG	5 cut(s)	379, 491, 511, 567, 620
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 459, 491
FatI	CATG	5 cut(s)	375, 487, 507, 563, 616
Fnu4HI	GCNGC	1 cut(s)	1045
FokI	GGATG	4 cut(s)	104, 212, 577, 1007
FriOI	GRGCYC	2 cut(s)	348, 390
Fsp4HI	GCNGC	1 cut(s)	1045
FspBI	CTAG	5 cut(s)	63, 150, 434, 639, 948
GluI	GCNGC	1 cut(s)	1045
HaeIII	GGCC	2 cut(s)	143, 164
Hin1II	CATG	5 cut(s)	379, 491, 511, 567, 620
HincII	GTYRAC	1 cut(s)	1197
HindII	GTYRAC	1 cut(s)	1197
HinfI	GANTC	4 cut(s)	185, 713, 944, 984
Hpy166II	GTNNAC	6 cut(s)	128, 513, 1000, 1111, 1167, 1197
Hpy188I	TCNGA	6 cut(s)	190, 308, 315, 397, 649, 820
Hpy188III	TCNNGA	6 cut(s)	23, 31, 341, 376, 665, 1029
Hpy8I	GTNNAC	6 cut(s)	128, 513, 1000, 1111, 1167, 1197
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	29, 116, 431, 1091
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	7 cut(s)	357, 367, 563, 770, 895, 907, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	3 cut(s)	342, 396, 648
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	5 cut(s)	379, 491, 511, 567, 620
Kzo9I	GATC	4 cut(s)	94, 310, 607, 759
LmnI	GCTCC	2 cut(s)	792, 1031
Lsp1109I	GCAGC	1 cut(s)	1056
MaeI	CTAG	5 cut(s)	63, 150, 434, 639, 948
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	566, 920
MalI	GATC	4 cut(s)	96, 312, 609, 761
MboI	GATC	4 cut(s)	94, 310, 607, 759
MboII	GAAGA	7 cut(s)	85, 131, 206, 557, 684, 839, 970
MhlI	GDGCHC	2 cut(s)	348, 390
MluCI	AATT	6 cut(s)	391, 520, 656, 846, 1011, 1036
MmeI	TCCRAC	1 cut(s)	1207
Mph1103I	ATGCAT	1 cut(s)	1025
MseI	TTAA	4 cut(s)	519, 621, 653, 1007
MslI	CAYNNNNRTG	1 cut(s)	562
MspCI	CTTAAG	1 cut(s)	1006
MspR9I	CCNGG	1 cut(s)	481
Mva1269I	GAATGC	2 cut(s)	905, 1025
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	4 cut(s)	94, 310, 607, 759
NlaIII	CATG	5 cut(s)	379, 491, 511, 567, 620
NlaIV	GGNNCC	2 cut(s)	635, 1033
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	1025
NspI	RCATGY	2 cut(s)	567, 620
NspV	TTCGAA	1 cut(s)	695
PagI	TCATGA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	905, 1025
PfeI	GAWTC	4 cut(s)	185, 713, 944, 984
PkrI	GCNGC	1 cut(s)	1046
Ppu21I	YACGTR	1 cut(s)	240
PsiI	TTATAA	2 cut(s)	845, 1101
Psp124BI	GAGCTC	2 cut(s)	348, 390
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	635, 1033
PspPI	GGNCC	3 cut(s)	513, 734, 1180
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	562
SacI	GAGCTC	2 cut(s)	348, 390
SaqAI	TTAA	4 cut(s)	519, 621, 653, 1007
SatI	GCNGC	1 cut(s)	1045
Sau3AI	GATC	4 cut(s)	94, 310, 607, 759
Sau96I	GGNCC	3 cut(s)	513, 734, 1180
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	348, 390
SfcI	CTRYAG	2 cut(s)	501, 611
SfuI	TTCGAA	1 cut(s)	695
SinI	GGWCC	3 cut(s)	513, 734, 1180
SmiMI	CAYNNNNRTG	1 cut(s)	562
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
Sse9I	AATT	6 cut(s)	391, 520, 656, 846, 1011, 1036
SsiI	CCGC	3 cut(s)	175, 865, 1200
SspI	AATATT	3 cut(s)	748, 1125, 1138
SspMI	CTAG	5 cut(s)	63, 150, 434, 639, 948
SstI	GAGCTC	2 cut(s)	348, 390
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	4 cut(s)	62, 144, 165, 990
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	5 cut(s)	12, 24, 30, 627, 695
TasI	AATT	6 cut(s)	391, 520, 656, 846, 1011, 1036
TfiI	GAWTC	4 cut(s)	185, 713, 944, 984
Tru1I	TTAA	4 cut(s)	519, 621, 653, 1007
Tru9I	TTAA	4 cut(s)	519, 621, 653, 1007
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	1044
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	8 cut(s)	207, 216, 364, 392, 525, 558, 951, 1073
TspGWI	ACGGA	2 cut(s)	428, 435
Vha464I	CTTAAG	1 cut(s)	1006
VpaK11BI	GGWCC	3 cut(s)	513, 734, 1180
XceI	RCATGY	2 cut(s)	567, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	5 cut(s)	63, 150, 434, 639, 948
Zsp2I	ATGCAT	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.