Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Reverse (-)

60826362 .. 60832203

Gene Structure 5842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATGGACTTCGATAGCCTTCTCGACTTCGAGAGCGACGAGCCAGTCCTCAACCCCCCTCCTAGGAAAAGGAAGAAAGTTATTGGGCTGGATGATCTTTTGACTGATTTCTACAAGGAAGAAGGTAAACTTGTTGAAAAGGCGTCTAGGAAAGCAAAGGCCAAGGCACGGCGGAACAATGATTCAGATGAAGAGGATGAACACAGAGAGGCTTCCCTCTCTCAACTTGTTGATACGTGTGAAAACCAGATAATAGAAATAGGTGGCAAGGAGGATAGCTTTTTGTGGGGGACATGCGTTTTCGGAGAACAGAGAACCCCACCTCCCCTTGCTTTTCCTGAGCTCAAAAGTTGCACAGTCTTGCAGTCTTTCATGAAAAACCAGCTCAATTCTGAGTTTGAAATCTGTACGGACAACGGAGACACTTTGCTAGAAGGGTTATTAGTAAATGGCTGGCTTTCAAAAGTGGTTCTTGCCAGGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATCCTCTCATCCAAAAATGAGGTTGATCTACAGCATGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCAAATATGGAATATGTTGATTCCAGTTCTGGTCGTCAAGGTCCAGCTCAAAATATTAGAGCGTGGATCAAATATGCAACTACTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGTTGATGGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTTTGCACGAATGCTTGCAGTCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCCAAGGATGTGAACTGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCACCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATAGTTGTTTTGATTATAAGGCCCAGGATGAAGTAGAGATCCTAAATTTGCTAGTCTCAATCAATGTGAAAGACAAAAACTGTGATTTCTTCAAGGTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAAGCAACTGAGTGAAGACAAGCAAGTATTGAATGAAATGTGGCGCCTGTACTTACGAAACTGTTCTTATCTGATCGCCAGTACAGATTTGAGATCTTTTGCCTCTAAGGTCCGTAATAAGGCTGCATATCTCCTGCAAGGCACCATCACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

457

Amino Acids

52.42

Weight (kDa)

5.19

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	842, 1098
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	1260, 1358
AccI	GTMKAC	1 cut(s)	1185
AciI	CCGC	2 cut(s)	172, 862
AclWI	GGATC	2 cut(s)	764, 1114
AcsI	RAATTY	1 cut(s)	1126
AcyI	GRCGYC	2 cut(s)	143, 1261
AfaI	GTAC	3 cut(s)	409, 1268, 1300
AfiI	CCNNNNNNNGG	4 cut(s)	63, 168, 1206, 1336
AflII	CTTAAG	1 cut(s)	1003
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	9 cut(s)	137, 401, 462, 665, 685, 693, 872, 1174, 1249
AjnI	CCWGG	2 cut(s)	476, 1104
AloI	GAACNNNNNNTCC	2 cut(s)	307, 339
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	2 cut(s)	414, 1141
AlwI	GGATC	2 cut(s)	764, 1114
AoxI	GGCC	2 cut(s)	159, 1101
ApeKI	GCWGC	1 cut(s)	1340
ApoI	RAATTY	1 cut(s)	1126
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
Asp700I	GAANNNNTTC	1 cut(s)	1279
AspA2I	CCTAGG	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	1263
AspS9I	GGNCC	4 cut(s)	510, 731, 1102, 1327
AsuHPI	GGTGA	1 cut(s)	1357
AvaII	GGWCC	3 cut(s)	510, 731, 1327
AvrII	CCTAGG	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	1260, 1358
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	1239
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	1327
BccI	CCATC	3 cut(s)	517, 826, 1370
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	478, 1106
BcoDI	GTCTC	2 cut(s)	414, 1141
BfaI	CTAG	6 cut(s)	63, 147, 431, 636, 945, 1133
BfmI	CTRYAG	2 cut(s)	498, 608
BfoI	RGCGCY	1 cut(s)	1264
BfrI	CTTAAG	1 cut(s)	1003
BglII	AGATCT	1 cut(s)	1310
BisI	GCNGC	1 cut(s)	1341
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	1342
Bme1390I	CCNGG	2 cut(s)	478, 1106
Bme18I	GGWCC	3 cut(s)	510, 731, 1327
BmgT120I	GGNCC	4 cut(s)	510, 731, 1102, 1327
BmiI	GGNNCC	4 cut(s)	632, 1030, 1262, 1360
BmrFI	CCNGG	2 cut(s)	478, 1106
BpiI	GAAGAC	1 cut(s)	1239
Bpu10I	CCTNAGC	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	624
BsaAI	YACGTR	1 cut(s)	237
BsaHI	GRCGYC	2 cut(s)	143, 1261
BsaJI	CCNNGG	6 cut(s)	62, 162, 477, 813, 987, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 168, 1206, 1336
Bse1I	ACTGG	3 cut(s)	44, 714, 1296
BseBI	CCWGG	2 cut(s)	478, 1106
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	6 cut(s)	62, 162, 477, 813, 987, 1104
BseGI	GGATG	5 cut(s)	97, 202, 587, 997, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	63, 168, 1206, 1336
BseMII	CTCAG	4 cut(s)	330, 384, 636, 1217
BseNI	ACTGG	3 cut(s)	44, 714, 1296
BseRI	GAGGAG	1 cut(s)	802
BseXI	GCAGC	1 cut(s)	1327
BshFI	GGCC	2 cut(s)	161, 1103
BshNI	GGYRCC	2 cut(s)	1260, 1358
BshVI	ATCGAT	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	63, 168, 1206, 1336
BsmAI	GTCTC	2 cut(s)	414, 1141
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	2 cut(s)	902, 1022
BsnI	GGCC	2 cut(s)	161, 1103
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
BspACI	CCGC	2 cut(s)	172, 862
BspANI	GGCC	2 cut(s)	161, 1103
BspCNI	CTCAG	4 cut(s)	331, 385, 637, 1218
BspDI	ATCGAT	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	4 cut(s)	632, 1030, 1262, 1360
BspPI	GGATC	2 cut(s)	764, 1114
BspT107I	GGYRCC	2 cut(s)	1260, 1358
BspTI	CTTAAG	1 cut(s)	1003
BsrI	ACTGG	3 cut(s)	44, 714, 1296
BssECI	CCNNGG	6 cut(s)	62, 162, 477, 813, 987, 1104
BssMI	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
BssNAI	GTATAC	1 cut(s)	1186
BssNI	GRCGYC	2 cut(s)	143, 1261
BssT1I	CCWWGG	3 cut(s)	62, 162, 987
Bst1107I	GTATAC	1 cut(s)	1186
Bst2UI	CCWGG	2 cut(s)	478, 1106
Bst4CI	ACNGT	3 cut(s)	358, 1163, 1280
Bst6I	CTCTTC	4 cut(s)	186, 537, 694, 819
BstACI	GRCGYC	2 cut(s)	143, 1261
BstAFI	CTTAAG	1 cut(s)	1003
BstBAI	YACGTR	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	455, 866, 902, 976
BstDEI	CTNAG	6 cut(s)	339, 393, 645, 1218, 1226, 1323
BstF5I	GGATG	5 cut(s)	97, 202, 587, 997, 1114
BstH2I	RGCGCY	1 cut(s)	1264
BstHHI	GCGC	1 cut(s)	1263
BstKTI	GATC	6 cut(s)	97, 607, 759, 1122, 1293, 1313
BstMAI	GTCTC	2 cut(s)	414, 1141
BstMBI	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
BstNI	CCWGG	2 cut(s)	478, 1106
BstNSI	RCATGY	3 cut(s)	297, 564, 617
BstSCI	CCNGG	2 cut(s)	476, 1104
BstSFI	CTRYAG	2 cut(s)	498, 608
BstV1I	GCAGC	1 cut(s)	1327
BstV2I	GAAGAC	1 cut(s)	1239
BstX2I	RGATCY	2 cut(s)	1119, 1310
BstYI	RGATCY	2 cut(s)	1119, 1310
BstZ17I	GTATAC	1 cut(s)	1186
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	161, 1103
BsuTUI	ATCGAT	1 cut(s)	624
BtsCI	GGATG	5 cut(s)	97, 202, 587, 997, 1114
Cac8I	GCNNGC	4 cut(s)	455, 866, 902, 976
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	1 cut(s)	1263
Cfr13I	GGNCC	4 cut(s)	510, 731, 1102, 1327
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	408, 1267, 1299
CviAII	CATG	6 cut(s)	294, 373, 485, 505, 561, 614
CviQI	GTAC	3 cut(s)	408, 1267, 1299
DdeI	CTNAG	6 cut(s)	339, 393, 645, 1218, 1226, 1323
DinI	GGCGCC	1 cut(s)	1262
DpnI	GATC	6 cut(s)	96, 606, 758, 1121, 1292, 1312
DpnII	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	4 cut(s)	186, 537, 694, 819
EarI	CTCTTC	4 cut(s)	186, 537, 694, 819
EciI	GGCGGA	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	62, 162, 987
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	3 cut(s)	510, 731, 1327
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	476, 1104
EcoT14I	CCWWGG	3 cut(s)	62, 162, 987
EcoT22I	ATGCAT	1 cut(s)	1022
EcoT38I	GRGCYC	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	1262
EheI	GGCGCC	1 cut(s)	1262
ErhI	CCWWGG	3 cut(s)	62, 162, 987
FaeI	CATG	6 cut(s)	297, 376, 488, 508, 564, 617
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 456, 488
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	6 cut(s)	293, 372, 484, 504, 560, 613
FblI	GTMKAC	1 cut(s)	1185
Fnu4HI	GCNGC	1 cut(s)	1341
FokI	GGATG	5 cut(s)	104, 209, 574, 1004, 1121
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	1341
FspBI	CTAG	6 cut(s)	63, 147, 431, 636, 945, 1133
GlaI	GCGC	1 cut(s)	1262
GluI	GCNGC	1 cut(s)	1341
HaeII	RGCGCY	1 cut(s)	1264
HaeIII	GGCC	2 cut(s)	161, 1103
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	1263
Hin1I	GRCGYC	2 cut(s)	143, 1261
Hin1II	CATG	6 cut(s)	297, 376, 488, 508, 564, 617
Hin6I	GCGC	1 cut(s)	1261
HinP1I	GCGC	1 cut(s)	1261
HincII	GTYRAC	1 cut(s)	1197
HindII	GTYRAC	1 cut(s)	1197
HinfI	GANTC	4 cut(s)	182, 710, 941, 981
HphI	GGTGA	1 cut(s)	1357
Hpy166II	GTNNAC	5 cut(s)	128, 510, 997, 1186, 1197
Hpy188I	TCNGA	6 cut(s)	187, 305, 394, 646, 817, 1290
Hpy188III	TCNNGA	6 cut(s)	23, 31, 338, 373, 662, 1026
Hpy8I	GTNNAC	5 cut(s)	128, 510, 997, 1186, 1197
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	29, 116, 428, 1088
HpyCH4III	ACNGT	3 cut(s)	358, 1163, 1280
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	9 cut(s)	354, 364, 560, 767, 892, 904, 1020, 1343, 1354
HpyF3I	CTNAG	6 cut(s)	339, 393, 645, 1218, 1226, 1323
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	2 cut(s)	143, 1261
Hsp92II	CATG	6 cut(s)	297, 376, 488, 508, 564, 617
HspAI	GCGC	1 cut(s)	1261
KasI	GGCGCC	1 cut(s)	1260
Kzo9I	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
LmnI	GCTCC	2 cut(s)	789, 1028
Lsp1109I	GCAGC	1 cut(s)	1327
MaeI	CTAG	6 cut(s)	63, 147, 431, 636, 945, 1133
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	563, 917
MalI	GATC	6 cut(s)	96, 606, 758, 1121, 1292, 1312
MboI	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
MboII	GAAGA	9 cut(s)	85, 131, 203, 554, 681, 836, 967, 1162, 1244
MflI	RGATCY	2 cut(s)	1119, 1310
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	8 cut(s)	388, 517, 653, 843, 1008, 1033, 1126, 1204
Mly113I	GGCGCC	1 cut(s)	1261
Mph1103I	ATGCAT	1 cut(s)	1022
MroXI	GAANNNNTTC	1 cut(s)	1279
MseI	TTAA	4 cut(s)	516, 618, 650, 1004
MslI	CAYNNNNRTG	1 cut(s)	559
MspCI	CTTAAG	1 cut(s)	1003
MspR9I	CCNGG	2 cut(s)	478, 1106
Mva1269I	GAATGC	2 cut(s)	902, 1022
MvaI	CCWGG	2 cut(s)	478, 1106
NarI	GGCGCC	1 cut(s)	1261
NdeII	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
NlaIII	CATG	6 cut(s)	297, 376, 488, 508, 564, 617
NlaIV	GGNNCC	4 cut(s)	632, 1030, 1262, 1360
NmuCI	GTSAC	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	1022
NspI	RCATGY	3 cut(s)	297, 564, 617
PagI	TCATGA	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	902, 1022
PdmI	GAANNNNTTC	1 cut(s)	1279
PfeI	GAWTC	4 cut(s)	182, 710, 941, 981
PkrI	GCNGC	1 cut(s)	1342
PluTI	GGCGCC	1 cut(s)	1264
Ppu21I	YACGTR	1 cut(s)	237
PsiI	TTATAA	2 cut(s)	842, 1098
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	476, 1104
PspGI	CCWGG	2 cut(s)	476, 1104
PspN4I	GGNNCC	4 cut(s)	632, 1030, 1262, 1360
PspPI	GGNCC	4 cut(s)	510, 731, 1102, 1327
PsuI	RGATCY	2 cut(s)	1119, 1310
RsaI	GTAC	3 cut(s)	409, 1268, 1300
RsaNI	GTAC	3 cut(s)	408, 1267, 1299
RseI	CAYNNNNRTG	1 cut(s)	559
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	516, 618, 650, 1004
SatI	GCNGC	1 cut(s)	1341
Sau3AI	GATC	6 cut(s)	94, 604, 756, 1119, 1290, 1310
Sau96I	GGNCC	4 cut(s)	510, 731, 1102, 1327
ScrFI	CCNGG	2 cut(s)	478, 1106
SduI	GDGCHC	1 cut(s)	345
SfcI	CTRYAG	2 cut(s)	498, 608
SfoI	GGCGCC	1 cut(s)	1262
SinI	GGWCC	3 cut(s)	510, 731, 1327
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	1003
SmoI	CTYRAG	1 cut(s)	1003
Sse9I	AATT	8 cut(s)	388, 517, 653, 843, 1008, 1033, 1126, 1204
SsiI	CCGC	2 cut(s)	172, 862
SspDI	GGCGCC	1 cut(s)	1260
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	6 cut(s)	63, 147, 431, 636, 945, 1133
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	476, 1104
StyI	CCWWGG	3 cut(s)	62, 162, 987
TaaI	ACNGT	3 cut(s)	358, 1163, 1280
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	4 cut(s)	12, 24, 30, 624
TaqII	GACCGA	1 cut(s)	1214
TasI	AATT	8 cut(s)	388, 517, 653, 843, 1008, 1033, 1126, 1204
TatI	WGTACW	2 cut(s)	1266, 1298
TfiI	GAWTC	4 cut(s)	182, 710, 941, 981
Tru1I	TTAA	4 cut(s)	516, 618, 650, 1004
Tru9I	TTAA	4 cut(s)	516, 618, 650, 1004
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	1340
Tsp45I	GTSAC	1 cut(s)	563
TspGWI	ACGGA	3 cut(s)	425, 432, 1319
Vha464I	CTTAAG	1 cut(s)	1003
VpaK11BI	GGWCC	3 cut(s)	510, 731, 1327
XapI	RAATTY	1 cut(s)	1126
XceI	RCATGY	3 cut(s)	297, 564, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmaJI	CCTAGG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	1185
XmnI	GAANNNNTTC	1 cut(s)	1279
XspI	CTAG	6 cut(s)	63, 147, 431, 636, 945, 1133
Zsp2I	ATGCAT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.