Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002035.1

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Forward (+)

13266 .. 18735

Gene Structure 5470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002035.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgatggacttcgatagccttctcgacttcgagagcgacgagccagtcctcaacccccctcctaagaaaaggaagaaagttattgggctggatgatcttttgactgatttctacaaggaagaaggtaaacttgttgaaaaggccaaggctaggaaagcaaaggccaaggcacggcggaacaatgattcagatgaagaggatgaacacagagaggcttccctctctcaacttgttgatacgtgcgaaaaccagataatagaaataggtggcaaggaggatagctttttgtgggggatatgcgttttcggagaccagagaaccccacctccccttgcttttcctgagctcaaaagttgcacagtcttgcagtctttcatgaaagacgagctcaattctgagtttgaaatctgtacggacaacggaaacactttgctagaagggttattagtaaatggctggctttcaaaagtggtttttgccaggggtcatgtggaaaagtctgtagccatgtggacctttaatttgatggcatattcatcaaatgaagagttgaggacatctgcatgtgacttctggtgtgctatcctctcatccaaaaatgaggttgatctacagcatgttaaaatcgattggttccctagctattctgagttaaaattggctcttgaaaactatggttttctgttcaactcttcgaatatggaatatgttgattccagttctggtcatcaaggtccagctcaaaatattagagcgtggatcaaatatgcaactacttcttgtcaagtgaggagcaaaacagctatatatttgacctcggaagcagaagagttgatggaagttataatttatctgtttttagaccgccagcttcaaggtctgtttgagcttttgcacgaatgcttgcagtcagctatcagttacttcacagacaatgaatgggaatctagctgtgagaagatagcaaaatctcttgctcgcagaatccccaaggatgtgaacagcttaagaattgtggaatgcatttcgggagccaattctcgcagcaagctgtttagaagtgtggatgaagtagagatcctaaatttgctagtctcaatcaatgtgaaagacaaaaactgtgatttcttcaaggtgtatgcatacttggtgttgaccgagaattggctcttgtctaagcaactgagtgaagacaagcaagtattgaatgaaatgtggcgcctgtacttacgaaactgttcttatctgatcgccagtacagatttgagatcttttgcctctaaggtccgtaataaggctgcatatctcctgcaaggcaccatcacccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

443

Amino Acids

50.73

Weight (kDa)

5.09

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	1218, 1316
AciI	CCGC	2 cut(s)	175, 865
AclWI	GGATC	2 cut(s)	767, 1072
AcsI	RAATTY	1 cut(s)	1084
AcyI	GRCGYC	1 cut(s)	1219
AfaI	GTAC	3 cut(s)	412, 1226, 1258
AfiI	CCNNNNNNNGG	4 cut(s)	150, 171, 1164, 1294
AflII	CTTAAG	1 cut(s)	1006
AgsI	TTSAA	8 cut(s)	137, 404, 465, 668, 688, 875, 1132, 1207
AjnI	CCWGG	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
Alw21I	GWGCWC	2 cut(s)	348, 390
Alw26I	GTCTC	2 cut(s)	303, 1099
AlwI	GGATC	2 cut(s)	767, 1072
AoxI	GGCC	2 cut(s)	141, 162
ApeKI	GCWGC	2 cut(s)	1044, 1298
ApoI	RAATTY	1 cut(s)	1084
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
Asp700I	GAANNNNTTC	1 cut(s)	1237
AspLEI	GCGC	1 cut(s)	1221
AspS9I	GGNCC	3 cut(s)	513, 734, 1285
AsuHPI	GGTGA	1 cut(s)	1315
AsuII	TTCGAA	1 cut(s)	695
AvaII	GGWCC	3 cut(s)	513, 734, 1285
BanI	GGYRCC	2 cut(s)	1218, 1316
BanII	GRGCYC	2 cut(s)	348, 390
BbsI	GAAGAC	1 cut(s)	1197
Bbv12I	GWGCWC	2 cut(s)	348, 390
BbvI	GCAGC	2 cut(s)	1056, 1285
BccI	CCATC	3 cut(s)	520, 829, 1328
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	303, 1099
BfaI	CTAG	5 cut(s)	150, 434, 639, 948, 1091
BfmI	CTRYAG	2 cut(s)	501, 611
BfoI	RGCGCY	1 cut(s)	1222
BfrI	CTTAAG	1 cut(s)	1006
BglII	AGATCT	1 cut(s)	1268
BisI	GCNGC	2 cut(s)	1045, 1299
BlsI	GCNGC	2 cut(s)	1046, 1300
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	3 cut(s)	513, 734, 1285
BmgT120I	GGNCC	3 cut(s)	513, 734, 1285
BmiI	GGNNCC	4 cut(s)	635, 1033, 1220, 1318
BmrFI	CCNGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	1197
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	1219
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	5 cut(s)	144, 165, 480, 816, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 171, 1164, 1294
Bse1I	ACTGG	3 cut(s)	44, 717, 1254
BseBI	CCWGG	1 cut(s)	481
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	5 cut(s)	144, 165, 480, 816, 990
BseGI	GGATG	5 cut(s)	97, 205, 590, 1000, 1072
BseLI	CCNNNNNNNGG	4 cut(s)	150, 171, 1164, 1294
BseMII	CTCAG	4 cut(s)	333, 387, 639, 1175
BseNI	ACTGG	3 cut(s)	44, 717, 1254
BseRI	GAGGAG	1 cut(s)	805
BseXI	GCAGC	2 cut(s)	1056, 1285
BshFI	GGCC	2 cut(s)	143, 164
BshNI	GGYRCC	2 cut(s)	1218, 1316
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	348, 390
BslI	CCNNNNNNNGG	4 cut(s)	150, 171, 1164, 1294
BsmAI	GTCTC	2 cut(s)	303, 1099
BsmI	GAATGC	2 cut(s)	905, 1025
BsnI	GGCC	2 cut(s)	143, 164
Bso31I	GGTCTC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	2 cut(s)	348, 390
Bsp143I	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
BspACI	CCGC	2 cut(s)	175, 865
BspANI	GGCC	2 cut(s)	143, 164
BspCNI	CTCAG	4 cut(s)	334, 388, 640, 1176
BspDI	ATCGAT	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	4 cut(s)	635, 1033, 1220, 1318
BspPI	GGATC	2 cut(s)	767, 1072
BspT104I	TTCGAA	1 cut(s)	695
BspT107I	GGYRCC	2 cut(s)	1218, 1316
BspTI	CTTAAG	1 cut(s)	1006
BspTNI	GGTCTC	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	44, 717, 1254
BssECI	CCNNGG	5 cut(s)	144, 165, 480, 816, 990
BssMI	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
BssNI	GRCGYC	1 cut(s)	1219
BssT1I	CCWWGG	3 cut(s)	144, 165, 990
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	3 cut(s)	361, 1121, 1238
Bst6I	CTCTTC	4 cut(s)	189, 540, 697, 822
BstACI	GRCGYC	1 cut(s)	1219
BstAFI	CTTAAG	1 cut(s)	1006
BstBAI	YACGTR	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	5 cut(s)	458, 869, 905, 979, 1049
BstDEI	CTNAG	7 cut(s)	63, 342, 396, 648, 1176, 1184, 1281
BstF5I	GGATG	5 cut(s)	97, 205, 590, 1000, 1072
BstH2I	RGCGCY	1 cut(s)	1222
BstHHI	GCGC	1 cut(s)	1221
BstKTI	GATC	6 cut(s)	97, 610, 762, 1080, 1251, 1271
BstMAI	GTCTC	2 cut(s)	303, 1099
BstMBI	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	2 cut(s)	567, 620
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	501, 611
BstV1I	GCAGC	2 cut(s)	1056, 1285
BstV2I	GAAGAC	1 cut(s)	1197
BstX2I	RGATCY	2 cut(s)	1077, 1268
BstYI	RGATCY	2 cut(s)	1077, 1268
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	143, 164
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	97, 205, 590, 1000, 1072
Cac8I	GCNNGC	5 cut(s)	458, 869, 905, 979, 1049
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	1 cut(s)	1221
Cfr13I	GGNCC	3 cut(s)	513, 734, 1285
ClaI	ATCGAT	1 cut(s)	627
Csp6I	GTAC	3 cut(s)	411, 1225, 1257
CviAII	CATG	5 cut(s)	376, 488, 508, 564, 617
CviQI	GTAC	3 cut(s)	411, 1225, 1257
DdeI	CTNAG	7 cut(s)	63, 342, 396, 648, 1176, 1184, 1281
DinI	GGCGCC	1 cut(s)	1220
DpnI	GATC	6 cut(s)	96, 609, 761, 1079, 1250, 1270
DpnII	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	4 cut(s)	189, 540, 697, 822
EarI	CTCTTC	4 cut(s)	189, 540, 697, 822
EciI	GGCGGA	1 cut(s)	190
Ecl136II	GAGCTC	2 cut(s)	346, 388
Eco130I	CCWWGG	3 cut(s)	144, 165, 990
Eco24I	GRGCYC	2 cut(s)	348, 390
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	513, 734, 1285
Eco53kI	GAGCTC	2 cut(s)	346, 388
EcoICRI	GAGCTC	2 cut(s)	346, 388
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	3 cut(s)	144, 165, 990
EcoT22I	ATGCAT	2 cut(s)	1025, 1144
EcoT38I	GRGCYC	2 cut(s)	348, 390
EgeI	GGCGCC	1 cut(s)	1220
EheI	GGCGCC	1 cut(s)	1220
ErhI	CCWWGG	3 cut(s)	144, 165, 990
FaeI	CATG	5 cut(s)	379, 491, 511, 567, 620
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	5 cut(s)	375, 487, 507, 563, 616
Fnu4HI	GCNGC	2 cut(s)	1045, 1299
FokI	GGATG	5 cut(s)	104, 212, 577, 1007, 1079
FriOI	GRGCYC	2 cut(s)	348, 390
Fsp4HI	GCNGC	2 cut(s)	1045, 1299
FspBI	CTAG	5 cut(s)	150, 434, 639, 948, 1091
GlaI	GCGC	1 cut(s)	1220
GluI	GCNGC	2 cut(s)	1045, 1299
HaeII	RGCGCY	1 cut(s)	1222
HaeIII	GGCC	2 cut(s)	143, 164
HhaI	GCGC	1 cut(s)	1221
Hin1I	GRCGYC	1 cut(s)	1219
Hin1II	CATG	5 cut(s)	379, 491, 511, 567, 620
Hin6I	GCGC	1 cut(s)	1219
HinP1I	GCGC	1 cut(s)	1219
HincII	GTYRAC	1 cut(s)	1155
HindII	GTYRAC	1 cut(s)	1155
HinfI	GANTC	4 cut(s)	185, 713, 944, 984
HphI	GGTGA	1 cut(s)	1315
Hpy166II	GTNNAC	4 cut(s)	128, 513, 1000, 1155
Hpy188I	TCNGA	6 cut(s)	190, 308, 397, 649, 820, 1248
Hpy188III	TCNNGA	6 cut(s)	23, 31, 341, 376, 665, 1029
Hpy8I	GTNNAC	4 cut(s)	128, 513, 1000, 1155
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	29, 116, 431
HpyCH4III	ACNGT	3 cut(s)	361, 1121, 1238
HpyCH4IV	ACGT	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	7 cut(s)	63, 342, 396, 648, 1176, 1184, 1281
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	1219
Hsp92II	CATG	5 cut(s)	379, 491, 511, 567, 620
HspAI	GCGC	1 cut(s)	1219
KasI	GGCGCC	1 cut(s)	1218
Kzo9I	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
LmnI	GCTCC	2 cut(s)	792, 1031
Lsp1109I	GCAGC	2 cut(s)	1056, 1285
MaeI	CTAG	5 cut(s)	150, 434, 639, 948, 1091
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	566, 920
MalI	GATC	6 cut(s)	96, 609, 761, 1079, 1250, 1270
MboI	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
MboII	GAAGA	9 cut(s)	85, 131, 206, 557, 684, 839, 970, 1120, 1202
MflI	RGATCY	2 cut(s)	1077, 1268
MhlI	GDGCHC	2 cut(s)	348, 390
MluCI	AATT	8 cut(s)	391, 520, 656, 846, 1011, 1036, 1084, 1162
Mly113I	GGCGCC	1 cut(s)	1219
Mph1103I	ATGCAT	2 cut(s)	1025, 1144
MroXI	GAANNNNTTC	1 cut(s)	1237
MseI	TTAA	4 cut(s)	519, 621, 653, 1007
MslI	CAYNNNNRTG	1 cut(s)	562
MspCI	CTTAAG	1 cut(s)	1006
MspR9I	CCNGG	1 cut(s)	481
Mva1269I	GAATGC	2 cut(s)	905, 1025
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	155
NarI	GGCGCC	1 cut(s)	1219
NdeII	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
NlaIII	CATG	5 cut(s)	379, 491, 511, 567, 620
NlaIV	GGNNCC	4 cut(s)	635, 1033, 1220, 1318
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	2 cut(s)	1025, 1144
NspI	RCATGY	2 cut(s)	567, 620
NspV	TTCGAA	1 cut(s)	695
PagI	TCATGA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	905, 1025
PdmI	GAANNNNTTC	1 cut(s)	1237
PfeI	GAWTC	4 cut(s)	185, 713, 944, 984
PkrI	GCNGC	2 cut(s)	1046, 1300
PluTI	GGCGCC	1 cut(s)	1222
Ppu21I	YACGTR	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	845
Psp124BI	GAGCTC	2 cut(s)	348, 390
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	4 cut(s)	635, 1033, 1220, 1318
PspPI	GGNCC	3 cut(s)	513, 734, 1285
PsuI	RGATCY	2 cut(s)	1077, 1268
RsaI	GTAC	3 cut(s)	412, 1226, 1258
RsaNI	GTAC	3 cut(s)	411, 1225, 1257
RseI	CAYNNNNRTG	1 cut(s)	562
SacI	GAGCTC	2 cut(s)	348, 390
SaqAI	TTAA	4 cut(s)	519, 621, 653, 1007
SatI	GCNGC	2 cut(s)	1045, 1299
Sau3AI	GATC	6 cut(s)	94, 607, 759, 1077, 1248, 1268
Sau96I	GGNCC	3 cut(s)	513, 734, 1285
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	348, 390
SfcI	CTRYAG	2 cut(s)	501, 611
SfoI	GGCGCC	1 cut(s)	1220
SfuI	TTCGAA	1 cut(s)	695
SinI	GGWCC	3 cut(s)	513, 734, 1285
SmiMI	CAYNNNNRTG	1 cut(s)	562
SmlI	CTYRAG	1 cut(s)	1006
SmoI	CTYRAG	1 cut(s)	1006
Sse9I	AATT	8 cut(s)	391, 520, 656, 846, 1011, 1036, 1084, 1162
SsiI	CCGC	2 cut(s)	175, 865
SspDI	GGCGCC	1 cut(s)	1218
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	5 cut(s)	150, 434, 639, 948, 1091
SstI	GAGCTC	2 cut(s)	348, 390
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	3 cut(s)	144, 165, 990
TaaI	ACNGT	3 cut(s)	361, 1121, 1238
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	5 cut(s)	12, 24, 30, 627, 695
TaqII	GACCGA	1 cut(s)	1172
TasI	AATT	8 cut(s)	391, 520, 656, 846, 1011, 1036, 1084, 1162
TatI	WGTACW	2 cut(s)	1224, 1256
TfiI	GAWTC	4 cut(s)	185, 713, 944, 984
Tru1I	TTAA	4 cut(s)	519, 621, 653, 1007
Tru9I	TTAA	4 cut(s)	519, 621, 653, 1007
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	2 cut(s)	1044, 1298
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	9 cut(s)	207, 216, 364, 392, 525, 558, 951, 1083, 1224
TspGWI	ACGGA	3 cut(s)	428, 435, 1277
Vha464I	CTTAAG	1 cut(s)	1006
VpaK11BI	GGWCC	3 cut(s)	513, 734, 1285
XapI	RAATTY	1 cut(s)	1084
XceI	RCATGY	2 cut(s)	567, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	1237
XspI	CTAG	5 cut(s)	150, 434, 639, 948, 1091
Zsp2I	ATGCAT	2 cut(s)	1025, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.