Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006346

Physical Location & Seq

Genomic Coordinates Forward (+)

28681002 .. 28691354

Gene Structure 10353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAATGGTTGGCGTTGTCGATGGAATATTGGGGATTGAAAGGTTGGCTGGCAATGTTTGGCAAAGATGGGATTTGGAGTGTAGGGAACGGAGTGGAAGGTAATATCGGTGGCGGATGCTATGGGAAGTGTTGGATATTTACAGACAGCTTGTTAACAAAATTCATACCATGTCAATCGTCGGTGAAGGACTGCGAGAATGACAAGAACGAGGATGCCGAGATTAGAACTTTTTGGGTGGAGGAGGACATAATGTTAGAGACTGCAGTTATTTTAGAGGCAAAGTTAGAGATGTTGCATTGTAATAGGAAAGCGTTCCTGCATATGATAATAGAAATAGGTGGCAAGGAGGATAGCTTTTTGTGGGGGATATGCGTTTTCGGAGACCAGAGAACCCCACCTCCTCTTGCTTTTCCTGAGCTTAAAAGTTGCACAGTCTTGCAATCTTTCATGAACAACAAGCTCAATTCTGAGTTTGAAATCTGTACGGACAACGGGGACACTTTGCTGGAAGGGTTATTAGTAAATGGCTGGCTTTCAAAAGTGGTTCTTGCCAGGGGTCATGTGGAAAAGTCTGTAGCCATGTGGACCTTTAATTTGATGGCATATTCATCAAATGAAGAGTTGAGGACATCTGCATGTGACTTCTGGTGTGCTATTCTCTCATCCAAAAATGAGGTTGATCTACAGCATGTTAAAATCGATTGGTTCCCTAGCTATTCTGAGTTAAAATTGGCTCTTGAAAACTATGGTTTTCTGTTCAACTCTTCGAATATGGAATATGTTCATTCCAGTTCTAGTCGTCAAGGTCCAGCTCAAAATATTAGAGCGTGGATCAAATATGCAACAATTTCTTGTCAAGTGAGGAGCAAAACAGCTATATATTTGACCTCGGAAGCAGAAGAGCTGATGGAAGTTATAATTTATCTGTTTTTAGACCGCCAGCTTCAAGGTCTGTTTGTGCTTTTGCACGAATGCATGCAGTCAGCTATCAGTTACTTCACAGACAATGAATGGGAATCTAGCTGTGAGAAGATAGCAAAATCTCTTGCTCGCAGAATCCCCAAGGATGTGAACTGCTTAAGAATTGTGGAATGCATTTCGGGAGCCAATTCTCGCAGCAAGCTGTTTAGAAGTGTGGTTGCCTATCAAATCCTTCATAGTTGTTTTGATTATAAGGCCCAGGATGAAGTAGAGATCCTAAATTTGCTGATCTCAATCAATGTGAAAGACAAAAACTGTGATTTCTTCAAGGTGTATGTATACTTGGTGTTGACCGAGAATTGGCTCTTGTCTAATCAACTGAGTGAAGACAAGCAAGTATTGAATGAAATGTGGCGCCTGTACTTACAAAACTGTTCTTGCCTGATCGCCAGTACAGATTTGAGATCCTTTGCCTCTAAGGTCCGTAATAAGGCTGCATATCTTCTGCAAGGCACCGTCACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM178

Protein Analysis

483

Amino Acids

55.22

Weight (kDa)

5.15

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28130
fragaria_vesca	FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770 FvH4_3g30770
malus_domestica	MD11G1147300.v1.1
prunus_persica	Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1 Prupe.6G111800_v2.0.a1
pyrus_communis	pycom11g12060
rosa_chinensis	RchiOBHm_Chr5g0056961
rosa_laevigata	RLG00000035143
rosa_multiflora	Rmu_sc0002035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023210
rosa_rugosa	Rorug05G0304700 Rorug05G0304800 Rorug05G0304900
rosa_samantha	Rh5AG374100 Rh5BG385200 Rh5CG408400 Rh5DG398500
rosa_wichuraiana	Rw5G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	920, 1176
AccB1I	GGYRCC	2 cut(s)	1338, 1436
AccI	GTMKAC	1 cut(s)	1263
AciI	CCGC	2 cut(s)	114, 940
AclWI	GGATC	3 cut(s)	842, 1192, 1383
AcsI	RAATTY	2 cut(s)	161, 1204
AcyI	GRCGYC	1 cut(s)	1339
AfaI	GTAC	3 cut(s)	487, 1346, 1378
AfiI	CCNNNNNNNGG	2 cut(s)	1284, 1414
AflII	CTTAAG	1 cut(s)	1081
AgsI	TTSAA	8 cut(s)	40, 479, 540, 743, 763, 950, 1252, 1327
AjnI	CCWGG	2 cut(s)	554, 1182
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
Alw26I	GTCTC	2 cut(s)	254, 378
AlwI	GGATC	3 cut(s)	842, 1192, 1383
AoxI	GGCC	1 cut(s)	1179
ApeKI	GCWGC	2 cut(s)	1119, 1418
ApoI	RAATTY	2 cut(s)	161, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
Asp700I	GAANNNNTTC	2 cut(s)	314, 783
AspLEI	GCGC	1 cut(s)	1341
AspS9I	GGNCC	4 cut(s)	588, 809, 1180, 1405
AsuHPI	GGTGA	2 cut(s)	196, 1435
AsuII	TTCGAA	1 cut(s)	770
AvaII	GGWCC	3 cut(s)	588, 809, 1405
BanI	GGYRCC	2 cut(s)	1338, 1436
BbsI	GAAGAC	1 cut(s)	1317
BbvI	GCAGC	2 cut(s)	1131, 1405
BccI	CCATC	4 cut(s)	16, 62, 595, 904
BciT130I	CCWGG	2 cut(s)	556, 1184
BcoDI	GTCTC	2 cut(s)	254, 378
BfaI	CTAG	3 cut(s)	714, 798, 1023
BfmI	CTRYAG	3 cut(s)	264, 576, 686
BfoI	RGCGCY	1 cut(s)	1342
BfrI	CTTAAG	1 cut(s)	1081
BisI	GCNGC	2 cut(s)	1120, 1419
BlsI	GCNGC	2 cut(s)	1121, 1420
Bme1390I	CCNGG	2 cut(s)	556, 1184
Bme18I	GGWCC	3 cut(s)	588, 809, 1405
BmgT120I	GGNCC	4 cut(s)	588, 809, 1180, 1405
BmiI	GGNNCC	4 cut(s)	710, 1108, 1340, 1438
BmrFI	CCNGG	2 cut(s)	556, 1184
BmsI	GCATC	2 cut(s)	107, 205
BpiI	GAAGAC	1 cut(s)	1317
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	770
Bsa29I	ATCGAT	1 cut(s)	702
BsaBI	GATNNNNATC	1 cut(s)	1217
BsaHI	GRCGYC	1 cut(s)	1339
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	4 cut(s)	555, 891, 1065, 1182
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	1284, 1414
Bse1I	ACTGG	2 cut(s)	792, 1374
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	1217
BseBI	CCWGG	2 cut(s)	556, 1184
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	4 cut(s)	555, 891, 1065, 1182
BseGI	GGATG	5 cut(s)	122, 220, 665, 1075, 1192
BseJI	GATNNNNATC	1 cut(s)	1217
BseLI	CCNNNNNNNGG	2 cut(s)	1284, 1414
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	4 cut(s)	408, 462, 714, 1295
BseNI	ACTGG	2 cut(s)	792, 1374
BseRI	GAGGAG	3 cut(s)	257, 393, 880
BseXI	GCAGC	2 cut(s)	1131, 1405
BshFI	GGCC	1 cut(s)	1181
BshNI	GGYRCC	2 cut(s)	1338, 1436
BshVI	ATCGAT	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	1284, 1414
BsmAI	GTCTC	2 cut(s)	254, 378
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	2 cut(s)	980, 1100
BsnI	GGCC	1 cut(s)	1181
Bso31I	GGTCTC	1 cut(s)	378
Bsp119I	TTCGAA	1 cut(s)	770
Bsp143I	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
BspACI	CCGC	2 cut(s)	114, 940
BspANI	GGCC	1 cut(s)	1181
BspCNI	CTCAG	4 cut(s)	409, 463, 715, 1296
BspDI	ATCGAT	1 cut(s)	702
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	4 cut(s)	710, 1108, 1340, 1438
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	3 cut(s)	842, 1192, 1383
BspQI	GCTCTTC	1 cut(s)	897
BspT104I	TTCGAA	1 cut(s)	770
BspT107I	GGYRCC	2 cut(s)	1338, 1436
BspTI	CTTAAG	1 cut(s)	1081
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	792, 1374
BssECI	CCNNGG	4 cut(s)	555, 891, 1065, 1182
BssMI	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
BssNAI	GTATAC	1 cut(s)	1264
BssNI	GRCGYC	1 cut(s)	1339
BssT1I	CCWWGG	1 cut(s)	1065
Bst1107I	GTATAC	1 cut(s)	1264
Bst2UI	CCWGG	2 cut(s)	556, 1184
Bst4CI	ACNGT	4 cut(s)	436, 1241, 1358, 1441
Bst6I	CTCTTC	3 cut(s)	615, 772, 897
BstACI	GRCGYC	1 cut(s)	1339
BstAFI	CTTAAG	1 cut(s)	1081
BstBI	TTCGAA	1 cut(s)	770
BstC8I	GCNNGC	6 cut(s)	51, 533, 944, 980, 1054, 1124
BstDEI	CTNAG	5 cut(s)	417, 471, 723, 1304, 1401
BstF5I	GGATG	5 cut(s)	122, 220, 665, 1075, 1192
BstH2I	RGCGCY	1 cut(s)	1342
BstHHI	GCGC	1 cut(s)	1341
BstKTI	GATC	6 cut(s)	685, 837, 1200, 1215, 1371, 1391
BstMAI	GTCTC	2 cut(s)	254, 378
BstMBI	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
BstNI	CCWGG	2 cut(s)	556, 1184
BstNSI	RCATGY	3 cut(s)	642, 695, 982
BstSCI	CCNGG	2 cut(s)	554, 1182
BstSFI	CTRYAG	3 cut(s)	264, 576, 686
BstV1I	GCAGC	2 cut(s)	1131, 1405
BstV2I	GAAGAC	1 cut(s)	1317
BstX2I	RGATCY	2 cut(s)	1197, 1388
BstYI	RGATCY	2 cut(s)	1197, 1388
BstZ17I	GTATAC	1 cut(s)	1264
Bsu15I	ATCGAT	1 cut(s)	702
BsuRI	GGCC	1 cut(s)	1181
BsuTUI	ATCGAT	1 cut(s)	702
BtsCI	GGATG	5 cut(s)	122, 220, 665, 1075, 1192
Cac8I	GCNNGC	6 cut(s)	51, 533, 944, 980, 1054, 1124
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	1341
Cfr13I	GGNCC	4 cut(s)	588, 809, 1180, 1405
ClaI	ATCGAT	1 cut(s)	702
Csp6I	GTAC	3 cut(s)	486, 1345, 1377
CviAII	CATG	7 cut(s)	171, 451, 563, 583, 639, 692, 979
CviQI	GTAC	3 cut(s)	486, 1345, 1377
DdeI	CTNAG	5 cut(s)	417, 471, 723, 1304, 1401
DinI	GGCGCC	1 cut(s)	1340
DpnI	GATC	6 cut(s)	684, 836, 1199, 1214, 1370, 1390
DpnII	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
Eam1104I	CTCTTC	3 cut(s)	615, 772, 897
EarI	CTCTTC	3 cut(s)	615, 772, 897
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	1065
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	588, 809, 1405
EcoRII	CCWGG	2 cut(s)	554, 1182
EcoT14I	CCWWGG	1 cut(s)	1065
EcoT22I	ATGCAT	2 cut(s)	980, 1100
EgeI	GGCGCC	1 cut(s)	1340
EheI	GGCGCC	1 cut(s)	1340
ErhI	CCWWGG	1 cut(s)	1065
FaeI	CATG	7 cut(s)	174, 454, 566, 586, 642, 695, 982
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	7 cut(s)	170, 450, 562, 582, 638, 691, 978
FauNDI	CATATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	1263
Fnu4HI	GCNGC	2 cut(s)	1120, 1419
FokI	GGATG	5 cut(s)	129, 227, 652, 1082, 1199
Fsp4HI	GCNGC	2 cut(s)	1120, 1419
FspBI	CTAG	3 cut(s)	714, 798, 1023
GlaI	GCGC	1 cut(s)	1340
GluI	GCNGC	2 cut(s)	1120, 1419
HaeII	RGCGCY	1 cut(s)	1342
HaeIII	GGCC	1 cut(s)	1181
HhaI	GCGC	1 cut(s)	1341
Hin1I	GRCGYC	1 cut(s)	1339
Hin1II	CATG	7 cut(s)	174, 454, 566, 586, 642, 695, 982
Hin6I	GCGC	1 cut(s)	1339
HinP1I	GCGC	1 cut(s)	1339
HincII	GTYRAC	2 cut(s)	156, 1275
HindII	GTYRAC	2 cut(s)	156, 1275
HinfI	GANTC	2 cut(s)	1019, 1059
HpaI	GTTAAC	1 cut(s)	156
HphI	GGTGA	2 cut(s)	196, 1435
Hpy166II	GTNNAC	5 cut(s)	156, 588, 1075, 1264, 1275
Hpy188I	TCNGA	4 cut(s)	383, 472, 724, 895
Hpy188III	TCNNGA	4 cut(s)	416, 451, 740, 1104
Hpy8I	GTNNAC	5 cut(s)	156, 588, 1075, 1264, 1275
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	4 cut(s)	92, 181, 506, 1166
HpyCH4III	ACNGT	4 cut(s)	436, 1241, 1358, 1441
HpyF3I	CTNAG	5 cut(s)	417, 471, 723, 1304, 1401
Hsp92I	GRCGYC	1 cut(s)	1339
Hsp92II	CATG	7 cut(s)	174, 454, 566, 586, 642, 695, 982
HspAI	GCGC	1 cut(s)	1339
KasI	GGCGCC	1 cut(s)	1338
KspAI	GTTAAC	1 cut(s)	156
Kzo9I	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	2 cut(s)	867, 1106
Lsp1109I	GCAGC	2 cut(s)	1131, 1405
LweI	GCATC	2 cut(s)	107, 205
MaeI	CTAG	3 cut(s)	714, 798, 1023
MaeIII	GTNAC	3 cut(s)	641, 995, 1441
MalI	GATC	6 cut(s)	684, 836, 1199, 1214, 1370, 1390
MboI	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
MboII	GAAGA	7 cut(s)	632, 759, 914, 1045, 1240, 1322, 1418
MflI	RGATCY	2 cut(s)	1197, 1388
Mly113I	GGCGCC	1 cut(s)	1339
MmeI	TCCRAC	1 cut(s)	113
Mph1103I	ATGCAT	2 cut(s)	980, 1100
MroXI	GAANNNNTTC	2 cut(s)	314, 783
MseI	TTAA	6 cut(s)	155, 423, 594, 696, 728, 1082
MslI	CAYNNNNRTG	1 cut(s)	637
MspCI	CTTAAG	1 cut(s)	1081
MspR9I	CCNGG	2 cut(s)	556, 1184
Mva1269I	GAATGC	2 cut(s)	980, 1100
MvaI	CCWGG	2 cut(s)	556, 1184
NarI	GGCGCC	1 cut(s)	1339
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
NlaIII	CATG	7 cut(s)	174, 454, 566, 586, 642, 695, 982
NlaIV	GGNNCC	4 cut(s)	710, 1108, 1340, 1438
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	641, 1441
NsiI	ATGCAT	2 cut(s)	980, 1100
NspI	RCATGY	3 cut(s)	642, 695, 982
NspV	TTCGAA	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	982
PagI	TCATGA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	897
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	2 cut(s)	980, 1100
PdmI	GAANNNNTTC	2 cut(s)	314, 783
PfeI	GAWTC	2 cut(s)	1019, 1059
PkrI	GCNGC	2 cut(s)	1121, 1420
PluTI	GGCGCC	1 cut(s)	1342
PsiI	TTATAA	2 cut(s)	920, 1176
Psp6I	CCWGG	2 cut(s)	554, 1182
PspGI	CCWGG	2 cut(s)	554, 1182
PspN4I	GGNNCC	4 cut(s)	710, 1108, 1340, 1438
PspPI	GGNCC	4 cut(s)	588, 809, 1180, 1405
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	1197, 1388
RsaI	GTAC	3 cut(s)	487, 1346, 1378
RsaNI	GTAC	3 cut(s)	486, 1345, 1377
RseI	CAYNNNNRTG	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	6 cut(s)	155, 423, 594, 696, 728, 1082
SatI	GCNGC	2 cut(s)	1120, 1419
Sau3AI	GATC	6 cut(s)	682, 834, 1197, 1212, 1368, 1388
Sau96I	GGNCC	4 cut(s)	588, 809, 1180, 1405
ScrFI	CCNGG	2 cut(s)	556, 1184
SfaNI	GCATC	2 cut(s)	107, 205
SfcI	CTRYAG	3 cut(s)	264, 576, 686
SfoI	GGCGCC	1 cut(s)	1340
SfuI	TTCGAA	1 cut(s)	770
SinI	GGWCC	3 cut(s)	588, 809, 1405
SmiMI	CAYNNNNRTG	1 cut(s)	637
SmlI	CTYRAG	1 cut(s)	1081
SmoI	CTYRAG	1 cut(s)	1081
SphI	GCATGC	1 cut(s)	982
SsiI	CCGC	2 cut(s)	114, 940
SspDI	GGCGCC	1 cut(s)	1338
SspI	AATATT	2 cut(s)	29, 823
SspMI	CTAG	3 cut(s)	714, 798, 1023
StyD4I	CCNGG	2 cut(s)	554, 1182
StyI	CCWWGG	1 cut(s)	1065
TaaI	ACNGT	4 cut(s)	436, 1241, 1358, 1441
TaqI	TCGA	3 cut(s)	20, 702, 770
TaqII	GACCGA	1 cut(s)	1292
TatI	WGTACW	2 cut(s)	1344, 1376
TfiI	GAWTC	2 cut(s)	1019, 1059
Tru1I	TTAA	6 cut(s)	155, 423, 594, 696, 728, 1082
Tru9I	TTAA	6 cut(s)	155, 423, 594, 696, 728, 1082
TseFI	GTSAC	2 cut(s)	641, 1441
TseI	GCWGC	2 cut(s)	1119, 1418
Tsp45I	GTSAC	2 cut(s)	641, 1441
TspGWI	ACGGA	3 cut(s)	105, 503, 1397
Vha464I	CTTAAG	1 cut(s)	1081
VpaK11BI	GGWCC	3 cut(s)	588, 809, 1405
XapI	RAATTY	2 cut(s)	161, 1204
XceI	RCATGY	3 cut(s)	642, 695, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	1263
XmnI	GAANNNNTTC	2 cut(s)	314, 783
XspI	CTAG	3 cut(s)	714, 798, 1023
Zsp2I	ATGCAT	2 cut(s)	980, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.